--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/bigg/GetModelProteome/GetModelProteome.xml	Fri Jun 10 10:31:34 2022 +0000
@@ -0,0 +1,34 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<tool id="met4j_GetModelProteome" name="GetModelProteome" version="0.11.0">
+  <description>Get proteome in fasta format of a model present in BIGG</description>
+  <xrefs>
+    <xref type="bio.tools">met4j</xref>
+  </xrefs>
+  <requirements>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.11.0</container>
+  </requirements>
+  <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh bigg.GetModelProteome -m "$modelId"
+ -o "$outputFile"
+]]></command>
+  <inputs>
+    <param argument="-m" label="[ex: iMM904] id of the BIGG model" name="modelId" optional="false" type="text" value="iMM904">
+      <sanitizer invalid_char="_">
+        <valid initial="string.printable"/>
+      </sanitizer>
+    </param>
+  </inputs>
+  <outputs>
+    <data format="fasta" name="outputFile"/>
+  </outputs>
+  <tests>
+    <test maxseconds="120">
+      <param name="modelId" value="e_coli_core"/>
+      <output ftype="fasta" name="outputFile">
+        <assert_contents>
+          <has_line_matching expression=".*name=.*" n="136"/>
+        </assert_contents>
+      </output>
+    </test>
+  </tests>
+  <help><![CDATA[Get proteome in fasta format of a model present in BIGG]]></help>
+</tool>