Mercurial > repos > metexplore > met4j
diff tools/convert/FbcToNotes/test-data/buc.xml @ 0:dcd16521b969 draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 5dab0a2d83a1fdd7a1878a50ba0f24e752505393
| author | metexplore |
|---|---|
| date | Fri, 10 Jun 2022 10:31:34 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/convert/FbcToNotes/test-data/buc.xml Fri Jun 10 10:31:34 2022 +0000 @@ -0,0 +1,28791 @@ +<?xml version="1.0" encoding="UTF-8"?> +<sbml fbc:required="false" groups:required="false" level="3" version="2" xmlns="http://www.sbml.org/sbml/level3/version2/core" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1"> + <model fbc:strict="true" id="buc" metaid="buc" name="Buchnera aphidicola APS (Acyrthosiphon pisum)"> + <fbc:listOfGeneProducts> + <fbc:geneProduct fbc:id="buc_BU293" fbc:label="buc_BU293" fbc:name="buc_BU293" metaid="_3b5f29b7-7d2a-4855-93b8-7c90d14d0ab3"/> + <fbc:geneProduct fbc:id="buc_BU051" fbc:label="buc_BU051" fbc:name="buc_BU051" metaid="_8a589982-8208-4c05-bc37-97d713484725"/> + <fbc:geneProduct fbc:id="buc_BUpT04" fbc:label="buc_BUpT04" fbc:name="buc_BUpT04" metaid="_3a2826c8-559c-49db-8e70-9af02879cbdb"/> + <fbc:geneProduct fbc:id="buc_BU291" fbc:label="buc_BU291" fbc:name="buc_BU291" metaid="_85548c7c-4cf5-4109-ab4b-bd0a6361c04b"/> + <fbc:geneProduct fbc:id="buc_BU170" fbc:label="buc_BU170" fbc:name="buc_BU170" metaid="_8f006f07-a581-4cab-b1aa-f8d9f38dc0f9"/> + <fbc:geneProduct fbc:id="buc_BUpT02" fbc:label="buc_BUpT02" fbc:name="buc_BUpT02" metaid="cf85bb50-9322-4868-9902-03ee9365d0e6"/> + <fbc:geneProduct fbc:id="buc_BU292" fbc:label="buc_BU292" fbc:name="buc_BU292" metaid="_3c5b7024-2d3c-42ae-864e-e02d4e71f1e9"/> + <fbc:geneProduct fbc:id="buc_BU050" fbc:label="buc_BU050" fbc:name="buc_BU050" metaid="c77a76da-75c5-4122-b882-98c2116484e6"/> + <fbc:geneProduct fbc:id="buc_BU176" fbc:label="buc_BU176" fbc:name="buc_BU176" metaid="_8c90399e-5172-4f88-82b3-e0eaf422539a"/> + <fbc:geneProduct fbc:id="buc_BU298" fbc:label="buc_BU298" fbc:name="buc_BU298" metaid="_852f4d50-98a9-497e-9f57-3736f27f524f"/> + <fbc:geneProduct fbc:id="buc_BU174" fbc:label="buc_BU174" fbc:name="buc_BU174" metaid="e7c0475f-0389-402f-9044-d716fea29b35"/> + <fbc:geneProduct fbc:id="buc_BU175" fbc:label="buc_BU175" fbc:name="buc_BU175" metaid="c2d2667e-10da-41c1-b5ac-11180100406d"/> + <fbc:geneProduct fbc:id="buc_BU054" fbc:label="buc_BU054" fbc:name="buc_BU054" metaid="_9e5390cf-8fe6-4103-84e3-5f5811ea6180"/> + <fbc:geneProduct fbc:id="buc_BUpL04" fbc:label="buc_BUpL04" fbc:name="buc_BUpL04" metaid="aee65279-ea43-4153-8560-5d373615bbd4"/> + <fbc:geneProduct fbc:id="buc_BUpL05" fbc:label="buc_BUpL05" fbc:name="buc_BUpL05" metaid="_6fb2a307-08e7-4f59-95f5-d0ceb27321b1"/> + <fbc:geneProduct fbc:id="buc_BU290" fbc:label="buc_BU290" fbc:name="buc_BU290" metaid="_377460d5-e612-4055-a588-1b203582963a"/> + <fbc:geneProduct fbc:id="buc_BUpT01" fbc:label="buc_BUpT01" fbc:name="buc_BUpT01" metaid="_4d2fcfa4-9f8c-4842-a321-20ae0759bf25"/> + <fbc:geneProduct fbc:id="buc_BUpL06" fbc:label="buc_BUpL06" fbc:name="buc_BUpL06" metaid="ad75dc9b-6e4c-4cc9-98cf-e7f804972240"/> + <fbc:geneProduct 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metaid="e9ef2a88-b64b-4ef5-ba3f-35e1eb3dc17d"/> + <fbc:geneProduct fbc:id="buc_BU194" fbc:label="buc_BU194" fbc:name="buc_BU194" metaid="_53457949-997a-4598-9210-1a1d44dec528"/> + <fbc:geneProduct fbc:id="buc_BU195" fbc:label="buc_BU195" fbc:name="buc_BU195" metaid="ac94566d-f81a-4442-acd2-365c368d9c9c"/> + <fbc:geneProduct fbc:id="buc_BU192" fbc:label="buc_BU192" fbc:name="buc_BU192" metaid="_28ed9517-95c7-4057-b08c-00e1d645b82c"/> + <fbc:geneProduct fbc:id="buc_BU193" fbc:label="buc_BU193" fbc:name="buc_BU193" metaid="_64baa404-d482-4a9e-967f-7444b465fb58"/> + <fbc:geneProduct fbc:id="buc_BU196" fbc:label="buc_BU196" fbc:name="buc_BU196" metaid="fb92abcf-642a-4fe7-8cfa-18c05904669b"/> + <fbc:geneProduct fbc:id="buc_BU197" fbc:label="buc_BU197" fbc:name="buc_BU197" metaid="d0890ce5-71ab-4331-a8fb-b48cd19d70a1"/> + <fbc:geneProduct fbc:id="buc_BU070" fbc:label="buc_BU070" fbc:name="buc_BU070" metaid="_15bc930f-80e1-460a-9d02-ce431b372761"/> + <fbc:geneProduct fbc:id="buc_BU408" 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<fbc:geneProduct fbc:id="buc_BU097" fbc:label="buc_BU097" fbc:name="buc_BU097" metaid="cb91e5dd-aecb-40d1-bd82-9eadb9a1ea50"/> + <fbc:geneProduct fbc:id="buc_BU092" fbc:label="buc_BU092" fbc:name="buc_BU092" metaid="_20a2dd46-edb9-49fe-a926-bc9ccc1fa18a"/> + <fbc:geneProduct fbc:id="buc_BU419" fbc:label="buc_BU419" fbc:name="buc_BU419" metaid="_8ed2db87-2e91-42f5-835c-e2cfec2e5217"/> + <fbc:geneProduct fbc:id="buc_BU417" fbc:label="buc_BU417" fbc:name="buc_BU417" metaid="d31f8224-e913-4b80-aec3-a588db99f2de"/> + <fbc:geneProduct fbc:id="buc_BU538" fbc:label="buc_BU538" fbc:name="buc_BU538" metaid="add9714b-94f2-4a6f-8a2c-0be56b40333c"/> + <fbc:geneProduct fbc:id="buc_BU539" fbc:label="buc_BU539" fbc:name="buc_BU539" metaid="_448288a4-4de7-4bc2-8a00-38a754cb8d93"/> + <fbc:geneProduct fbc:id="buc_BU411" fbc:label="buc_BU411" fbc:name="buc_BU411" metaid="_1f5b7b58-1814-4464-add4-3090de8fead7"/> + <fbc:geneProduct fbc:id="buc_BU415" fbc:label="buc_BU415" fbc:name="buc_BU415" 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+ <p>NIKKAJI: J81.742B</p> + <p>formula: C7H14N2O4</p> + <p>weight: 190.1971</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_596e35ae-32ca-423e-89eb-f3a0a217fe1a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00666"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007596"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01303"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16026 47031"/> + <rdf:li rdf:resource="https://identifiers.org/LIPIDMAPS/LMFA01170102"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C00787" metaid="a2bd50f6-0ea2-4b10-a8da-f59fc33b35ce" name="tRNA(Tyr)" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00787</p> + <p>PubChem: 4045</p> + <p>ChEBI: 29182</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a2bd50f6-0ea2-4b10-a8da-f59fc33b35ce"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00787"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/29182"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11O7P" hasOnlySubstanceUnits="false" id="C00673" metaid="_59374b64-2feb-412f-9c54-bd4498e18294" name="2-Deoxy-D-ribose 5-phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00673</p> + <p>PubChem: 3942</p> + <p>3DMET: B04714</p> + <p>PDB-CCD: AAB ORP</p> + <p>ChEBI: 16132 55513</p> + <p>NIKKAJI: J993.340I</p> + <p>formula: C5H11O7P</p> + <p>weight: 214.1104</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_59374b64-2feb-412f-9c54-bd4498e18294"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00673"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B04714"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/AAB ORP"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16132 55513"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C01642" metaid="_36a7ab84-94e6-4f8f-95c3-5e5cb8f9d415" name="tRNA(Gly)" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01642</p> + <p>PubChem: 4791</p> + <p>ChEBI: 29176</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_36a7ab84-94e6-4f8f-95c3-5e5cb8f9d415"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01642"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/29176"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11O7P" hasOnlySubstanceUnits="false" id="C00672" metaid="_16129a23-5166-467c-9877-540c5636bea7" name="2-Deoxy-D-ribose 1-phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00672</p> + <p>CAS: 17210-42-3</p> + <p>PubChem: 3941</p> + <p>3DMET: B04713</p> + <p>ChEBI: 11563 28542</p> + <p>NIKKAJI: J1.011.725I</p> + <p>formula: C5H11O7P</p> + <p>weight: 214.1104</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_16129a23-5166-467c-9877-540c5636bea7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00672"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/17210-42-3"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B04713"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/11563 28542"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C01643" metaid="_82e9d600-0d01-4a7d-a1b6-3db7460bfe0f" name="tRNA(His)" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01643</p> + <p>PubChem: 4792</p> + <p>ChEBI: 29178</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_82e9d600-0d01-4a7d-a1b6-3db7460bfe0f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01643"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/29178"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N6O6P" hasOnlySubstanceUnits="false" id="C22441" metaid="_435f49c0-ce32-4c7d-8a71-0e63b044797a" name="dZMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C22441</p> + <p>PDB-CCD: 1AP</p> + <p>formula: C10H15N6O6P</p> + <p>weight: 346.2365</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_435f49c0-ce32-4c7d-8a71-0e63b044797a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C22441"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/1AP"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8O5" hasOnlySubstanceUnits="false" id="C02612" metaid="_13148750-5dc5-47be-a0db-942ef7dd15de" name="(R)-2-Methylmalate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C02612</p> + <p>PubChem: 5597</p> + <p>3DMET: B00465</p> + <p>ChEBI: 15586 30934</p> + <p>NIKKAJI: J73.970G</p> + <p>formula: C5H8O5</p> + <p>weight: 148.114</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_13148750-5dc5-47be-a0db-942ef7dd15de"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02612"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B00465"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/15586 30934"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C01644" metaid="dc13a571-b46a-4304-bdd4-13193e46c714" name="tRNA(Ile)" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01644</p> + <p>PubChem: 4793</p> + <p>ChEBI: 29174</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dc13a571-b46a-4304-bdd4-13193e46c714"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01644"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/29174"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O3" hasOnlySubstanceUnits="false" id="C00671" metaid="cab561df-6acb-4ca6-93b5-54fff0900392" name="(S)-3-Methyl-2-oxopentanoic acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00671</p> + <p>PubChem: 3940</p> + <p>3DMET: B01307</p> + <p>PDB-CCD: 1QQ</p> + <p>ChEBI: 15614 35146</p> + <p>LIPIDMAPS: LMFA01020275</p> + <p>NIKKAJI: J264.814H</p> + <p>formula: C6H10O3</p> + <p>weight: 130.1418</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cab561df-6acb-4ca6-93b5-54fff0900392"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00671"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01307"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/1QQ"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/15614 35146"/> + <rdf:li rdf:resource="https://identifiers.org/LIPIDMAPS/LMFA01020275"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N6O9P2" hasOnlySubstanceUnits="false" id="C22442" metaid="_0bc1c797-7da5-473f-bb9c-417dc2b9e03a" name="dZDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C22442</p> + <p>formula: C10H16N6O9P2</p> + <p>weight: 426.2164</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0bc1c797-7da5-473f-bb9c-417dc2b9e03a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C22442"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C01645" metaid="c184a74b-84dc-4b1c-9654-b5736a727ee1" name="tRNA(Leu)" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01645</p> + <p>PubChem: 4794</p> + <p>ChEBI: 29169</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c184a74b-84dc-4b1c-9654-b5736a727ee1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01645"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/29169"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C01646" metaid="adb56199-53d4-4faa-913e-39d4bf0ddc50" name="tRNA(Lys)" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01646</p> + <p>PubChem: 4795</p> + <p>ChEBI: 29185</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#adb56199-53d4-4faa-913e-39d4bf0ddc50"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01646"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/29185"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C01647" metaid="_22fadf3d-3259-402b-896b-ef455699f860" name="tRNA(Met)" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01647</p> + <p>PubChem: 4796</p> + <p>ChEBI: 29173</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_22fadf3d-3259-402b-896b-ef455699f860"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01647"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/29173"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25N5O15P2" hasOnlySubstanceUnits="false" id="C04916" metaid="ea3fc53b-dc44-44cc-8522-cd37206eb16b" name="N-(5'-Phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-D-ribosyl)-4-imidazolecarboxamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04916</p> + <p>PubChem: 7464</p> + <p>3DMET: B01804</p> + <p>PDB-CCD: 2ER</p> + <p>ChEBI: 27735</p> + <p>NIKKAJI: J2.760.456K</p> + <p>formula: C15H25N5O15P2</p> + <p>weight: 577.331</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ea3fc53b-dc44-44cc-8522-cd37206eb16b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04916"/> + 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rdf:resource="https://identifiers.org/ChEBI/29184"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C01649" metaid="_01c43d1e-9ee4-4a48-a80e-c074104378ce" name="tRNA(Pro)" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01649</p> + <p>PubChem: 4798</p> + <p>ChEBI: 29177</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01c43d1e-9ee4-4a48-a80e-c074104378ce"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01649"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/29177"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="H2Se" hasOnlySubstanceUnits="false" id="C01528" metaid="e69e916c-ce44-43d0-96b4-d42cfa2d50ee" name="Hydrogen selenide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01528</p> + <p>CAS: 7783-07-5</p> + <p>PubChem: 4690</p> + <p>3DMET: B01460</p> + <p>PDB-CCD: SE</p> + <p>ChEBI: 16503</p> + <p>formula: H2Se</p> + <p>weight: 80.9759</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e69e916c-ce44-43d0-96b4-d42cfa2d50ee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01528"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/7783-07-5"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01460"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/SE"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16503"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25N5O20P4" hasOnlySubstanceUnits="false" id="C02739" metaid="b67528bd-8d46-43d4-b7f2-f5072f6fb308" name="1-(5-Phospho-D-ribosyl)-ATP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C02739</p> + <p>PubChem: 5699</p> + <p>3DMET: B04862</p> + <p>ChEBI: 73200</p> + <p>NIKKAJI: J608.031F</p> + <p>formula: C15H25N5O20P4</p> + <p>weight: 719.2755</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b67528bd-8d46-43d4-b7f2-f5072f6fb308"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02739"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B04862"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/73200"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8N2O5" hasOnlySubstanceUnits="false" id="C00438" metaid="c211fb8b-e795-4817-b8bf-bedda74c320e" name="N-Carbamoyl-L-aspartate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00438</p> + <p>KNApSAcK: C00007265</p> + <p>PubChem: 3727</p> + <p>3DMET: B00115</p> + <p>PDB-CCD: NCD</p> + <p>ChEBI: 15859</p> + <p>NIKKAJI: J39.568D</p> + <p>formula: C5H8N2O5</p> + <p>weight: 176.1274</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + 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metaid="_431b86a5-8075-42d5-95bf-5b96dd561886" name="N-Acetylornithine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00437</p> + <p>CAS: 6205-08-9</p> + <p>PubChem: 3726</p> + <p>3DMET: B00114</p> + <p>PDB-CCD: AOR</p> + <p>ChEBI: 16543 181895</p> + <p>NIKKAJI: J37.495D</p> + <p>formula: C7H14N2O3</p> + <p>weight: 174.1977</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_431b86a5-8075-42d5-95bf-5b96dd561886"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00437"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/6205-08-9"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B00114"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/AOR"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16543 181895"/> + </rdf:Bag> + 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rdf:resource="https://identifiers.org/kegg.compound/C00441"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007469"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B00117"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/13086 18051"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H25N7O6" hasOnlySubstanceUnits="false" id="C00440" metaid="_6b972d8d-105c-45db-9390-480d2956cfd2" name="5-Methyltetrahydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00440</p> + <p>KNApSAcK: C00007252</p> + <p>CAS: 134-35-0</p> + <p>PubChem: 3729</p> + <p>3DMET: B04681</p> + <p>PDB-CCD: C2F THH</p> + <p>ChEBI: 15641</p> + <p>NIKKAJI: J356.349I</p> + <p>formula: C20H25N7O6</p> + <p>weight: 459.4558</p> + </body> + </notes> + <annotation> + <rdf:RDF 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<p>kegg.compound: C02987</p> + <p>PubChem: 5896</p> + <p>ChEBI: 29157</p> + <p>formula: C20H28N6O13PR(C5H8O6PR)n</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_203fc375-67de-4b14-8f30-ae5668aba2a0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02987"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/29157"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C02745" metaid="_06244b59-3fe8-407b-a2dd-a9b134d65bc7" name="Reduced flavodoxin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C02745</p> + <p>PubChem: 5705</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_06244b59-3fe8-407b-a2dd-a9b134d65bc7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02745"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4" hasOnlySubstanceUnits="false" id="C00680" metaid="_8907b5ff-90da-4fe8-b84f-fbf98a20d93a" name="meso-2,6-Diaminoheptanedioate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00680</p> + <p>KNApSAcK: C00007595</p> + <p>PubChem: 3949</p> + <p>3DMET: B01309</p> + <p>PDB-CCD: 6CL API</p> + <p>ChEBI: 16488 30308</p> + <p>NIKKAJI: J407.120D</p> + <p>formula: C7H14N2O4</p> + <p>weight: 190.1971</p> + </body> + </notes> + <annotation> + <rdf:RDF 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<species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C02988" metaid="_56ca4de7-6ca4-402d-b8f8-483461e3a211" name="L-Histidyl-tRNA(His)" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C02988</p> + <p>PubChem: 5897</p> + <p>ChEBI: 29155</p> + <p>formula: C16H24N3O11PR2(C5H8O6PR)n</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_56ca4de7-6ca4-402d-b8f8-483461e3a211"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02988"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/29155"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15N2O8P" hasOnlySubstanceUnits="false" id="C03838" metaid="_5f72be39-cd4b-435c-b7b9-6202d9bdcb55" name="5'-Phosphoribosylglycinamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C03838</p> + <p>KNApSAcK: C00007395</p> + <p>CAS: 10074-18-7</p> + <p>PubChem: 6578</p> + <p>3DMET: B04915</p> + <p>PDB-CCD: GAR</p> + <p>ChEBI: 18349</p> + <p>NIKKAJI: J372.863C</p> + <p>formula: C7H15N2O8P</p> + <p>weight: 286.1764</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f72be39-cd4b-435c-b7b9-6202d9bdcb55"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03838"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007395"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/10074-18-7"/> + <rdf:li 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rdf:resource="https://identifiers.org/CAS/4484-88-2"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01312"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/T6P"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/18283"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H16O13P2" hasOnlySubstanceUnits="false" id="C00447" metaid="_45c4b46d-0ca5-4fcc-a332-1f8cf87fac25" name="Sedoheptulose 1,7-bisphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00447</p> + <p>CAS: 815-91-8</p> + <p>PubChem: 3735</p> + <p>3DMET: B04683</p> + <p>ChEBI: 17969</p> + <p>NIKKAJI: J604.571E</p> + <p>formula: C7H16O13P2</p> + <p>weight: 370.1417</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_45c4b46d-0ca5-4fcc-a332-1f8cf87fac25"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00447"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/815-91-8"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B04683"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17969"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H22N7O6" hasOnlySubstanceUnits="false" id="C00445" metaid="b7c5b4a1-0d9f-45b0-a8f4-51a525f1f389" name="5,10-Methenyltetrahydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00445</p> + <p>PubChem: 3733</p> + <p>3DMET: B04682</p> + <p>ChEBI: 15638</p> + <p>NIKKAJI: J1.213.619F</p> + <p>formula: C20H22N7O6</p> + <p>weight: 456.432</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b7c5b4a1-0d9f-45b0-a8f4-51a525f1f389"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00445"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B04682"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/15638"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C01650" metaid="_0a29d6ff-e703-4c41-b7d8-9c76d42ddbcf" name="tRNA(Ser)" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01650</p> + <p>PubChem: 4799</p> + <p>ChEBI: 29179</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0a29d6ff-e703-4c41-b7d8-9c76d42ddbcf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01650"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/29179"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C01651" metaid="_3159eed7-a0b6-44c3-bbaa-e1acd4f88d5f" name="tRNA(Thr)" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01651</p> + <p>PubChem: 4800</p> + <p>ChEBI: 29180</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description 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rdf:resource="https://identifiers.org/kegg.compound/C00685"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H12O13P3R" hasOnlySubstanceUnits="false" id="C00201" metaid="_11219b0a-90ec-438b-9c64-f874904e7447" name="Nucleoside triphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00201</p> + <p>PubChem: 3501</p> + <p>ChEBI: 17326</p> + <p>formula: C5H12O13P3R</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_11219b0a-90ec-438b-9c64-f874904e7447"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00201"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17326"/> + </rdf:Bag> + 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fbc:charge="0" fbc:chemicalFormula="C15H23N5O14P2" hasOnlySubstanceUnits="false" id="C02741" metaid="af6e6e43-7366-48dc-8229-0e19f042c7c1" name="Phosphoribosyl-AMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C02741</p> + <p>PubChem: 5701</p> + <p>3DMET: B04863</p> + <p>ChEBI: 18374</p> + <p>formula: C15H23N5O14P2</p> + <p>weight: 559.3157</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#af6e6e43-7366-48dc-8229-0e19f042c7c1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02741"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B04863"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/18374"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O5" hasOnlySubstanceUnits="false" id="C00322" metaid="_5dc8e797-8e5d-414c-a137-b55988c24e5d" name="2-Oxoadipate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00322</p> + <p>KNApSAcK: C00000770</p> + <p>CAS: 3184-35-8</p> + <p>PubChem: 3616</p> + <p>3DMET: B00088</p> + <p>PDB-CCD: OOG</p> + <p>ChEBI: 15753</p> + <p>LIPIDMAPS: LMFA01170121</p> + <p>NIKKAJI: J39.063A</p> + <p>formula: C6H8O5</p> + <p>weight: 160.1247</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5dc8e797-8e5d-414c-a137-b55988c24e5d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00322"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00000770"/> + <rdf:li 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xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00693</p> + <p>PubChem: 3961</p> + <p>formula: C3H2OSR2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9b635ac4-c830-4df2-9bf9-9f7df4e13763"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00693"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4" hasOnlySubstanceUnits="false" id="C00330" metaid="ad69aa35-7fe0-4875-8723-728caee00aca" name="Deoxyguanosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00330</p> + <p>CAS: 961-07-9</p> + <p>PubChem: 3624</p> + <p>3DMET: B01219</p> + <p>PDB-CCD: GNG</p> + <p>ChEBI: 17172</p> + 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rdf:resource="https://identifiers.org/kegg.compound/C15812"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO4" hasOnlySubstanceUnits="false" id="C00217" metaid="b9f9f1a5-cd38-4bb4-8688-9720774b6bed" name="D-Glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00217</p> + <p>KNApSAcK: C00019577</p> + <p>CAS: 6893-26-1</p> + <p>PubChem: 3517</p> + <p>3DMET: B01192</p> + <p>PDB-CCD: DGL FGA</p> + <p>ChEBI: 15966</p> + <p>NIKKAJI: J9.214B</p> + <p>formula: C5H9NO4</p> + <p>weight: 147.1293</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b9f9f1a5-cd38-4bb4-8688-9720774b6bed"> + <bqbiol:is> + <rdf:Bag> + <rdf:li 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metaid="c636e510-7d27-4763-83ea-ed7d5812a201" name="dCTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00458</p> + <p>CAS: 2056-98-6</p> + <p>PubChem: 3742</p> + <p>3DMET: B01248</p> + <p>PDB-CCD: DCP</p> + <p>ChEBI: 16311</p> + <p>NIKKAJI: J247.702E</p> + <p>formula: C9H16N3O13P3</p> + <p>weight: 467.1569</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c636e510-7d27-4763-83ea-ed7d5812a201"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00458"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/2056-98-6"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01248"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/DCP"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16311"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3" hasOnlySubstanceUnits="false" id="C00577" metaid="_0f21c85a-a1f2-400c-8b90-756c0dfc63ca" name="D-Glyceraldehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00577</p> + <p>CAS: 453-17-8 367-47-5</p> + <p>PubChem: 3856</p> + <p>3DMET: B00137</p> + <p>PDB-CCD: 3GR</p> + <p>ChEBI: 17378</p> + <p>NIKKAJI: J5.790H J9.119G</p> + <p>formula: C3H6O3</p> + <p>weight: 90.0779</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0f21c85a-a1f2-400c-8b90-756c0dfc63ca"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00577"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/453-17-8 367-47-5"/> + <rdf:li 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rdf:resource="https://identifiers.org/kegg.compound/C02992"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/29163"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H15N2O8P" hasOnlySubstanceUnits="false" id="C00455" metaid="_343aa6ec-7560-418d-923a-a9af5a518481" name="Nicotinamide D-ribonucleotide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00455</p> + <p>KNApSAcK: C00019694</p> + <p>CAS: 1094-61-7</p> + <p>PubChem: 3741</p> + <p>3DMET: B01247</p> + <p>PDB-CCD: NMN</p> + <p>ChEBI: 16171</p> + <p>NIKKAJI: J9.877I</p> + <p>formula: C11H15N2O8P</p> + <p>weight: 334.2192</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_343aa6ec-7560-418d-923a-a9af5a518481"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00455"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00019694"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/1094-61-7"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01247"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/NMN"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16171"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H16N2O5" hasOnlySubstanceUnits="false" id="C21015" metaid="c8fa9096-4ae8-4811-9837-e9d3e8132d15" name="gamma-L-Glutamyl-L-2-aminobutyrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C21015</p> + <p>PubChem: 254741469</p> + <p>ChEBI: 176875</p> + <p>formula: 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metaid="_0adfd6a8-e338-4aa8-80c2-b6da98cd3621" name="NDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00454</p> + <p>PubChem: 3740</p> + <p>ChEBI: 16862</p> + <p>formula: C5H11O10P2R</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0adfd6a8-e338-4aa8-80c2-b6da98cd3621"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00454"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16862"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10O4" hasOnlySubstanceUnits="false" id="C02631" metaid="_89b43eb6-33ae-40ec-9a03-1f0567859552" name="2-Isopropylmaleate" sboTerm="SBO:0000240"> + <notes> + 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name="Ophthalmate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C21016</p> + <p>PubChem: 254741470</p> + <p>formula: C11H19N3O6</p> + <p>weight: 289.2851</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0be50c0d-2a5f-4bb0-b524-6901105b4f2b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C21016"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H23N7O6" hasOnlySubstanceUnits="false" id="C00101" metaid="abec11eb-0971-40f7-8cf1-4e1b89d4253f" name="Tetrahydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00101</p> + <p>KNApSAcK: 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boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O4S2R4" hasOnlySubstanceUnits="false" id="C00343" metaid="_602c8b09-77f0-4ad6-9056-514f4c257a30" name="Thioredoxin disulfide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00343</p> + <p>PubChem: 3636</p> + <p>ChEBI: 18191</p> + <p>formula: C10H12N4O4S2R4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_602c8b09-77f0-4ad6-9056-514f4c257a30"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00343"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/18191"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7N" hasOnlySubstanceUnits="false" id="C00463" metaid="_7f8e45ef-7d6b-4aaf-b869-cf5abfe079ca" name="Indole" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00463</p> + <p>KNApSAcK: C00001418</p> + <p>CAS: 120-72-9</p> + <p>PubChem: 3747</p> + <p>3DMET: B01251</p> + <p>PDB-CCD: IND</p> + <p>ChEBI: 16881</p> + <p>NIKKAJI: J2.920C</p> + <p>formula: C8H7N</p> + <p>weight: 117.1479</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7f8e45ef-7d6b-4aaf-b869-cf5abfe079ca"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00463"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00001418"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/120-72-9"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01251"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/IND"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16881"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14N4O4S2R4" hasOnlySubstanceUnits="false" id="C00342" metaid="_41d65f98-fdbd-4505-8eb2-d6c662ad5676" name="Thioredoxin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00342</p> + <p>CAS: 52500-60-4</p> + <p>PubChem: 3635</p> + <p>ChEBI: 15033 15967</p> + <p>formula: C10H14N4O4S2R4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_41d65f98-fdbd-4505-8eb2-d6c662ad5676"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00342"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/52500-60-4"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/15033 15967"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H40N7O17P3S" hasOnlySubstanceUnits="false" id="C00100" metaid="_80b9eb8c-7c68-4144-b860-3519030c355f" name="Propanoyl-CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00100</p> + <p>CAS: 317-66-8</p> + <p>PubChem: 3400</p> + <p>3DMET: B04632</p> + <p>PDB-CCD: 1VU</p> + <p>ChEBI: 15539</p> + <p>LIPIDMAPS: LMFA07050364</p> + <p>NIKKAJI: J1.695.704F</p> + <p>formula: C24H40N7O17P3S</p> + <p>weight: 823.5974</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description 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id="C00229" metaid="_166b2b4b-ce15-48e5-a01e-b49cecf576e2" name="Acyl-carrier protein" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00229</p> + <p>PubChem: 3528</p> + <p>ChEBI: 18359</p> + <p>formula: HSR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_166b2b4b-ce15-48e5-a01e-b49cecf576e2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00229"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/18359"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H7NO2" hasOnlySubstanceUnits="false" id="C00108" metaid="b3dcc1b2-79b9-4cb5-9ed1-590465731736" name="Anthranilate" sboTerm="SBO:0000240"> + 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</rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5O5P" hasOnlySubstanceUnits="false" id="C00227" metaid="_9d7c8626-0af9-4b66-bc38-5dfff72e18de" name="Acetyl phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00227</p> + <p>KNApSAcK: C00019559</p> + <p>PubChem: 3527</p> + <p>3DMET: B00063</p> + <p>PDB-CCD: UVW</p> + <p>ChEBI: 15350</p> + <p>NIKKAJI: J37.490C</p> + <p>formula: C2H5O5P</p> + <p>weight: 140.0319</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9d7c8626-0af9-4b66-bc38-5dfff72e18de"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00227"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00019559"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B00063"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/UVW"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/15350"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N2O9P" hasOnlySubstanceUnits="false" id="C00105" metaid="d7c3b4ed-9075-4bc0-9de3-8005f147f2f1" name="UMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00105</p> + <p>KNApSAcK: C00007311</p> + <p>CAS: 58-97-9</p> + <p>PubChem: 3405</p> + <p>3DMET: B01161</p> + <p>PDB-CCD: U U5P</p> + <p>ChEBI: 16695</p> + <p>NIKKAJI: J4.594B</p> + <p>formula: C9H13N2O9P</p> + <p>weight: 324.1813</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d7c3b4ed-9075-4bc0-9de3-8005f147f2f1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00105"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007311"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/58-97-9"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01161"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/U U5P"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16695"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14N4O11P2" hasOnlySubstanceUnits="false" id="C00104" metaid="dbd3046b-0bf0-49c3-b9d8-2d17c357255b" name="IDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00104</p> + <p>CAS: 86-04-4</p> + 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id="C01672" metaid="de7eac8b-e8f1-4182-bdcd-edf968dded0a" name="Cadaverine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01672</p> + <p>KNApSAcK: C00001403</p> + <p>CAS: 462-94-2</p> + <p>PubChem: 4816</p> + <p>3DMET: B00334</p> + <p>PDB-CCD: N2P</p> + <p>ChEBI: 18127</p> + <p>NIKKAJI: J5.771A</p> + <p>formula: C5H14N2</p> + <p>weight: 102.1781</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#de7eac8b-e8f1-4182-bdcd-edf968dded0a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01672"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00001403"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/462-94-2"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B00334"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/N2P"/> + 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rdf:resource="https://identifiers.org/kegg.compound/C00345"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007481"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01221"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/6PG"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/48928"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14N5O10PS" hasOnlySubstanceUnits="false" id="C00224" metaid="ded6589f-d995-4778-82fb-e2b4c7073a26" name="Adenylyl sulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00224</p> + <p>KNApSAcK: C00007445</p> + <p>CAS: 485-84-7</p> + <p>PubChem: 3524</p> + <p>3DMET: B01194</p> + <p>PDB-CCD: ADX</p> + <p>ChEBI: 17709</p> + <p>NIKKAJI: J37.502K</p> + <p>formula: C10H14N5O10PS</p> + <p>weight: 427.2844</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ded6589f-d995-4778-82fb-e2b4c7073a26"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00224"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007445"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/485-84-7"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01194"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/ADX"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17709"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13O9P" hasOnlySubstanceUnits="false" id="C00103" metaid="_55b7b39b-aba6-43d7-a6ca-e0326bd39bc3" name="D-Glucose 1-phosphate" sboTerm="SBO:0000240"> + 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<species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9NO4" hasOnlySubstanceUnits="false" id="C03972" metaid="_14558367-a496-42f3-a4e1-8eb5e49782c8" name="2,3,4,5-Tetrahydrodipicolinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C03972</p> + <p>KNApSAcK: C00007502</p> + <p>PubChem: 6692</p> + <p>3DMET: B01707</p> + <p>ChEBI: 16845 864</p> + <p>NIKKAJI: J603.133A</p> + <p>formula: C7H9NO4</p> + <p>weight: 171.1507</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_14558367-a496-42f3-a4e1-8eb5e49782c8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03972"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007502"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01707"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16845 864"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O3" hasOnlySubstanceUnits="false" id="C00233" metaid="aa1fe3e0-7114-46f7-b046-ada8edf5902c" name="4-Methyl-2-oxopentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00233</p> + <p>KNApSAcK: C00019677</p> + <p>CAS: 816-66-0</p> + <p>PubChem: 3532</p> + <p>3DMET: B00066</p> + <p>PDB-CCD: COI</p> + <p>ChEBI: 17865 48430</p> + <p>NIKKAJI: J39.557I</p> + <p>formula: C6H10O3</p> + <p>weight: 130.1418</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#aa1fe3e0-7114-46f7-b046-ada8edf5902c"> + <bqbiol:is> + <rdf:Bag> + 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compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="false" id="C00111" metaid="bbf77b7d-bd2d-4afb-af97-5581f5cfe7ee" name="Glycerone phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00111</p> + <p>KNApSAcK: C00007560</p> + <p>CAS: 57-04-5</p> + <p>PubChem: 3411</p> + <p>3DMET: B00029</p> + <p>PDB-CCD: 13P</p> + <p>ChEBI: 16108</p> + <p>NIKKAJI: J213.543D</p> + <p>formula: C3H7O6P</p> + <p>weight: 170.0578</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bbf77b7d-bd2d-4afb-af97-5581f5cfe7ee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00111"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007560"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/57-04-5"/> + <rdf:li 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id="C03506" metaid="e1b73845-7453-4ee2-ac0b-acceb836b269" name="Indoleglycerol phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C03506</p> + <p>PubChem: 6317</p> + <p>3DMET: B04900</p> + <p>PDB-CCD: IGP</p> + <p>ChEBI: 18299 51793</p> + <p>NIKKAJI: J39.032A</p> + <p>formula: C11H14NO6P</p> + <p>weight: 287.2057</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e1b73845-7453-4ee2-ac0b-acceb836b269"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03506"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B04900"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/IGP"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/18299 51793"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12NO8PR2" hasOnlySubstanceUnits="false" id="C00350" metaid="_4fd49a46-0826-4843-9e49-06b798786c11" name="Phosphatidylethanolamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00350</p> + <p>CAS: 39382-08-6</p> + <p>PubChem: 3643</p> + <p>ChEBI: 16038</p> + <p>formula: C7H12NO8PR2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4fd49a46-0826-4843-9e49-06b798786c11"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00350"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/39382-08-6"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16038"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H3O3SR" hasOnlySubstanceUnits="false" id="C01209" metaid="cbb2b025-b3da-439b-8ea1-4e68ff17cd4e" name="Malonyl-[acyl-carrier protein]" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01209</p> + <p>PubChem: 4431</p> + <p>ChEBI: 17330</p> + <p>formula: C3H3O3SR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cbb2b025-b3da-439b-8ea1-4e68ff17cd4e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01209"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17330"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H10NO6P" hasOnlySubstanceUnits="false" id="C12215" metaid="c99d9b5a-23e0-4af9-91ba-b5dc7e352837" name="Iminoerythrose 4-phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C12215</p> + <p>PubChem: 14360</p> + <p>3DMET: B05619</p> + <p>ChEBI: 31692</p> + <p>NIKKAJI: J1.682.370H</p> + <p>formula: C4H10NO6P</p> + <p>weight: 199.0991</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c99d9b5a-23e0-4af9-91ba-b5dc7e352837"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C12215"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B05619"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/31692"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14NO8P" hasOnlySubstanceUnits="false" id="C12214" metaid="_8daacd9d-820a-4e8e-8bf8-258e212d36bc" name="Aminofructose 6-phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C12214</p> + <p>PubChem: 14359</p> + <p>3DMET: B05618</p> + <p>ChEBI: 31203</p> + <p>NIKKAJI: J2.781.581B</p> + <p>formula: C6H14NO8P</p> + <p>weight: 259.151</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8daacd9d-820a-4e8e-8bf8-258e212d36bc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C12214"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B05618"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/31203"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> 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</rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H12O7P2" hasOnlySubstanceUnits="false" id="C00235" metaid="a4486e53-c297-40b2-9935-e0e8b9b78479" name="Dimethylallyl diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00235</p> + <p>KNApSAcK: C00007294</p> + <p>CAS: 358-72-5</p> + <p>PubChem: 3534</p> + <p>3DMET: B01196</p> + <p>PDB-CCD: DMA</p> + <p>ChEBI: 16057</p> + <p>LIPIDMAPS: LMPR01010001</p> + <p>LipidBank: IIP0002</p> + <p>NIKKAJI: J39.581A</p> + <p>formula: C5H12O7P2</p> + <p>weight: 246.0921</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a4486e53-c297-40b2-9935-e0e8b9b78479"> + <bqbiol:is> + <rdf:Bag> + <rdf:li 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sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00113</p> + <p>CAS: 72909-34-3</p> + <p>PubChem: 3413</p> + <p>3DMET: B00030</p> + <p>PDB-CCD: PQQ</p> + <p>ChEBI: 18315</p> + <p>NIKKAJI: J126.218A</p> + <p>formula: C14H6N2O8</p> + <p>weight: 330.206</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_07196178-6426-4dca-af6e-9275afa4091b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00113"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/72909-34-3"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B00030"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/PQQ"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/18315"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N5O13P3" hasOnlySubstanceUnits="false" id="C00002" metaid="c3982148-50db-429d-bbda-1b991c59bb2a" name="ATP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00002</p> + <p>KNApSAcK: C00001491</p> + <p>CAS: 56-65-5</p> + <p>PubChem: 3304</p> + <p>3DMET: B01125</p> + <p>PDB-CCD: ATP</p> + <p>ChEBI: 15422</p> + <p>NIKKAJI: J10.680A</p> + <p>formula: C10H16N5O13P3</p> + <p>weight: 507.181</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c3982148-50db-429d-bbda-1b991c59bb2a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00002"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00001491"/> + <rdf:li 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rdf:resource="https://identifiers.org/KNApSAcK/C00001183 C00033849"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/110-17-8"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B00033"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/FUM"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/18012 29806"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N2O8P" hasOnlySubstanceUnits="false" id="C00364" metaid="_30883ec8-4196-48c9-b624-7b36aab3edee" name="dTMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00364</p> + <p>KNApSAcK: C00019637</p> + <p>CAS: 365-07-1</p> + <p>PubChem: 3655</p> + <p>3DMET: B01230</p> + <p>PDB-CCD: DT TMP</p> + <p>ChEBI: 17013</p> + <p>NIKKAJI: J150.344H</p> + <p>formula: C10H15N2O8P</p> + <p>weight: 322.2085</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_30883ec8-4196-48c9-b624-7b36aab3edee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00364"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00019637"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/365-07-1"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01230"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/DT TMP"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17013"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C03512" metaid="_800ea8de-8aec-4625-a0a5-b2a8935223cc" name="L-Tryptophanyl-tRNA(Trp)" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C03512</p> + <p>PubChem: 6322</p> + <p>ChEBI: 29159</p> + <p>formula: C26H31N7O11PR(C5H8O6PR)n</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_800ea8de-8aec-4625-a0a5-b2a8935223cc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03512"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/29159"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C22155" metaid="fc14d09a-8f47-4ef9-8b87-78544172233b" name="[Fe-S] cluster scaffold protein" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C22155</p> + <p>PubChem: 405226346</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fc14d09a-8f47-4ef9-8b87-78544172233b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C22155"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="false" id="C00121" metaid="_19bae950-2708-4ed9-ba83-53e1a9b7baaf" name="D-Ribose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00121</p> + <p>KNApSAcK: C00034198</p> + <p>CAS: 50-69-1</p> + <p>PubChem: 3421</p> + <p>3DMET: B04636</p> + <p>PDB-CCD: BDR RIB</p> + <p>ChEBI: 47013</p> + <p>NIKKAJI: J60.867J</p> + <p>formula: C5H10O5</p> + <p>weight: 150.1299</p> + </body> + </notes> + 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xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00242</p> + <p>KNApSAcK: C00001501</p> + <p>CAS: 73-40-5</p> + <p>PubChem: 3541</p> + <p>3DMET: B00067</p> + <p>PDB-CCD: GUN</p> + <p>ChEBI: 16235</p> + <p>NIKKAJI: J9.344K</p> + <p>formula: C5H5N5O</p> + <p>weight: 151.1261</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d203e35f-122f-448a-af40-f0a83619f870"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00242"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00001501"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/73-40-5"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B00067"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/GUN"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16235"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N2O11P2" hasOnlySubstanceUnits="false" id="C00363" metaid="_642f9864-21ea-4de8-9b49-c976535708e2" name="dTDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00363</p> + <p>KNApSAcK: C00019696</p> + <p>CAS: 491-97-4</p> + <p>PubChem: 3654</p> + <p>3DMET: B01229</p> + <p>PDB-CCD: TYD</p> + <p>ChEBI: 18075</p> + <p>NIKKAJI: J247.693B</p> + <p>formula: C10H16N2O11P2</p> + <p>weight: 402.1884</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_642f9864-21ea-4de8-9b49-c976535708e2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00363"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00019696"/> + 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xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#aa1ef6e4-9c58-42d1-9357-67376d518a82"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00362"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00019356"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/902-04-5"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01228"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/DG DGP"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16192"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N2O3S" hasOnlySubstanceUnits="false" id="C00120" metaid="_2be6ab2c-d68d-4e77-a254-3b9b224f00e1" name="Biotin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00120</p> + <p>KNApSAcK: C00000756</p> + <p>CAS: 58-85-5</p> + <p>PubChem: 3420</p> + <p>3DMET: B01165</p> + <p>PDB-CCD: BTN</p> + <p>ChEBI: 15956</p> + <p>NIKKAJI: J94.599D</p> + <p>formula: C10H16N2O3S</p> + <p>weight: 244.3106</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2be6ab2c-d68d-4e77-a254-3b9b224f00e1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00120"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00000756"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/58-85-5"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01165"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/BTN"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/15956"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N5O10P2" hasOnlySubstanceUnits="false" id="C00361" metaid="_72fc56f8-b6b3-4588-8f10-3f534cd5ec29" name="dGDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00361</p> + <p>PubChem: 3652</p> + <p>3DMET: B01227</p> + <p>PDB-CCD: DGI</p> + <p>ChEBI: 28862</p> + <p>NIKKAJI: J366.498H</p> + <p>formula: C10H15N5O10P2</p> + <p>weight: 427.2011</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_72fc56f8-b6b3-4588-8f10-3f534cd5ec29"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00361"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01227"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/DGI"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/28862"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H45N6O16P" hasOnlySubstanceUnits="false" id="C01217" metaid="fe0c44d8-b829-46aa-8da3-7d8067e94efa" name="5,6,7,8-Tetrahydromethanopterin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01217</p> + <p>CAS: 92481-94-2</p> + <p>PubChem: 4439</p> + <p>3DMET: B01409</p> + <p>ChEBI: 17321</p> + <p>NIKKAJI: J1.153.548H</p> + <p>formula: C30H45N6O16P</p> + <p>weight: 776.6827</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fe0c44d8-b829-46aa-8da3-7d8067e94efa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01217"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/92481-94-2"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01409"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17321"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C22150" metaid="_790fd5e2-5cc3-496e-8db6-bbbf68a44ac0" name="Reduced [2Fe-2S] ferredoxin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C22150</p> + <p>PubChem: 405226341</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_790fd5e2-5cc3-496e-8db6-bbbf68a44ac0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C22150"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14N5O6P" hasOnlySubstanceUnits="false" id="C00360" metaid="b756f7ba-738d-440b-9211-3d4ec4b309fb" name="dAMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00360</p> + <p>CAS: 653-63-4</p> + <p>PubChem: 3651</p> + <p>3DMET: B01226</p> + <p>PDB-CCD: D5M DA</p> + <p>ChEBI: 17713</p> + <p>NIKKAJI: J205.943F</p> + <p>formula: C10H14N5O6P</p> + <p>weight: 331.2218</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b756f7ba-738d-440b-9211-3d4ec4b309fb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00360"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/653-63-4"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01226"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/D5M DA"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17713"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C22151" metaid="d891330a-3259-4781-aa3b-bac7305e6203" name="Oxidized [2Fe-2S] ferredoxin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C22151</p> + <p>PubChem: 405226342</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d891330a-3259-4781-aa3b-bac7305e6203"> + 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metaid="_8ef6a348-a296-4624-a855-1eb7e3e5e175" name="Isopentenyl diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00129</p> + <p>KNApSAcK: C00000848</p> + <p>CAS: 358-71-4</p> + <p>PubChem: 3429</p> + <p>3DMET: B00035</p> + <p>PDB-CCD: IPE</p> + <p>ChEBI: 16584</p> + <p>LIPIDMAPS: LMPR01010008</p> + <p>LipidBank: IIP0001</p> + <p>NIKKAJI: J38.556E</p> + <p>formula: C5H12O7P2</p> + <p>weight: 246.0921</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8ef6a348-a296-4624-a855-1eb7e3e5e175"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00129"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00000848"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/358-71-4"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B00035"/> + 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xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bd33c11c-755d-4690-a46e-e569e871b028"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00007"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/7782-44-7"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B00001"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/OXY"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/15379 25805"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H29N7O17P3" hasOnlySubstanceUnits="false" id="C00006" metaid="d1b337a6-ef70-4dcf-b266-be402efa1f72" name="NADP+" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00006</p> + <p>CAS: 53-59-8</p> + <p>PubChem: 3308</p> + <p>3DMET: B01129</p> + <p>PDB-CCD: 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name="Glycine cleavage system H" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C22157</p> + <p>PubChem: 405226348</p> + <p>formula: NH2R</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b96773c8-9072-413c-9744-d06c92f7c1a1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C22157"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H18O7" hasOnlySubstanceUnits="false" id="C01451" metaid="_3057fb5a-0d22-4799-8d80-8da3029d7254" name="Salicin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01451</p> + <p>KNApSAcK: C00002672</p> + <p>CAS: 138-52-3</p> 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fbc:charge="0" fbc:chemicalFormula="C21H30N7O17P3" hasOnlySubstanceUnits="false" id="C00005" metaid="dca9c1fe-4a31-4487-98ec-efd67c980458" name="NADPH" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00005</p> + <p>CAS: 2646-71-1</p> + <p>PubChem: 3307</p> + <p>3DMET: B01128</p> + <p>PDB-CCD: NDP</p> + <p>ChEBI: 16474</p> + <p>NIKKAJI: J208.978E</p> + <p>formula: C21H30N7O17P3</p> + <p>weight: 745.4209</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dca9c1fe-4a31-4487-98ec-efd67c980458"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00005"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/2646-71-1"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01128"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/NDP"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16474"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="NH2R" hasOnlySubstanceUnits="false" id="C22158" metaid="a0944664-3fbc-4eab-b6db-a27d344252b4" name="Lipoyl-carrier protein E2" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C22158</p> + <p>PubChem: 405226349</p> + <p>formula: NH2R</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a0944664-3fbc-4eab-b6db-a27d344252b4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C22158"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H29N7O14P2" hasOnlySubstanceUnits="false" id="C00004" metaid="b9e21260-c384-4998-93a1-17bda56a8eda" name="NADH" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00004</p> + <p>KNApSAcK: C00019343</p> + <p>CAS: 58-68-4</p> + <p>PubChem: 3306</p> + <p>3DMET: B01127</p> + <p>PDB-CCD: NAI</p> + <p>ChEBI: 16908</p> + <p>NIKKAJI: J213.546I</p> + <p>formula: C21H29N7O14P2</p> + <p>weight: 665.441</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b9e21260-c384-4998-93a1-17bda56a8eda"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00004"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00019343"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/58-68-4"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01127"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/NAI"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16908"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16NOR" hasOnlySubstanceUnits="false" id="C22159" metaid="_25409c29-6e9f-4a1c-af28-46256fd2f2ba" name="[Glycine cleavage system H]-N6-octanoyl-L-lysine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C22159</p> + <p>PubChem: 405226350</p> + <p>formula: C8H16NOR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_25409c29-6e9f-4a1c-af28-46256fd2f2ba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li 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fbc:chemicalFormula="CH4Se" hasOnlySubstanceUnits="false" id="C05703" metaid="_4821c073-db31-4704-aaeb-96a2f7d43970" name="Methaneselenol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05703</p> + <p>CAS: 6486-05-1</p> + <p>PubChem: 8010</p> + <p>3DMET: B01888</p> + <p>ChEBI: 64685</p> + <p>NIKKAJI: J151.317F</p> + <p>formula: CH4Se</p> + <p>weight: 95.0025</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4821c073-db31-4704-aaeb-96a2f7d43970"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05703"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/6486-05-1"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01888"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/64685"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H20N4O6" hasOnlySubstanceUnits="false" id="C00255" metaid="b3f51e53-59e2-4743-a82d-e27d4955d08e" name="Riboflavin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00255</p> + <p>KNApSAcK: C00001552</p> + <p>CAS: 83-88-5</p> + <p>PubChem: 3554</p> + <p>3DMET: B01201</p> + <p>PDB-CCD: RBF</p> + <p>ChEBI: 17015</p> + <p>NIKKAJI: J3.876H</p> + <p>formula: C17H20N4O6</p> + <p>weight: 376.3639</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b3f51e53-59e2-4743-a82d-e27d4955d08e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00255"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00001552"/> + <rdf:li 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name="IMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00130</p> + <p>KNApSAcK: C00007224</p> + <p>CAS: 131-99-7</p> + <p>PubChem: 3430</p> + <p>3DMET: B01168</p> + <p>PDB-CCD: IMP</p> + <p>ChEBI: 17202</p> + <p>NIKKAJI: J9.493E</p> + <p>formula: C10H13N4O8P</p> + <p>weight: 348.206</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8768d450-e3e5-4388-8f52-86c6db4f0d36"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00130"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007224"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/131-99-7"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01168"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/IMP"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17202"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10O5" hasOnlySubstanceUnits="false" id="C00493" metaid="ace5e259-870e-4016-8893-9bf6f0ba53bc" name="Shikimate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00493</p> + <p>KNApSAcK: C00001203</p> + <p>CAS: 138-59-0</p> + <p>PubChem: 3776</p> + <p>3DMET: B01267</p> + <p>PDB-CCD: SKM</p> + <p>ChEBI: 16119</p> + <p>NIKKAJI: J3.267K</p> + <p>formula: C7H10O5</p> + <p>weight: 174.1513</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ace5e259-870e-4016-8893-9bf6f0ba53bc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00493"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00001203"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/138-59-0"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01267"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/SKM"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16119"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10O6" hasOnlySubstanceUnits="false" id="C00251" metaid="b578472f-4470-467c-967e-1d19a1dd5627" name="Chorismate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00251</p> + <p>KNApSAcK: C00000733</p> + <p>CAS: 617-12-9</p> + <p>PubChem: 3550</p> + <p>3DMET: B01200</p> + <p>PDB-CCD: ISJ</p> + <p>ChEBI: 17333</p> + <p>NIKKAJI: J7.035A</p> + <p>formula: C10H10O6</p> + <p>weight: 226.1828</p> + </body> + </notes> + <annotation> 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xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C03406</p> + <p>KNApSAcK: C00019688</p> + <p>CAS: 2387-71-5</p> + <p>PubChem: 6235</p> + <p>3DMET: B04894</p> + <p>ChEBI: 15682 184023</p> + <p>NIKKAJI: J37.380J</p> + <p>formula: C10H18N4O6</p> + <p>weight: 290.2731</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6524280c-8259-446c-b1a0-3a773ea37ce7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03406"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00019688"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/2387-71-5"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B04894"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/15682 184023"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H19O2SR" hasOnlySubstanceUnits="false" id="C04619" metaid="_671e6e5b-bd1d-491d-92bf-c2c5e7f9a2ca" name="(3R)-3-Hydroxydecanoyl-[acyl-carrier protein]" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04619</p> + <p>PubChem: 7209</p> + <p>formula: C10H19O2SR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_671e6e5b-bd1d-491d-92bf-c2c5e7f9a2ca"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04619"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O2SR" hasOnlySubstanceUnits="false" id="C04618" metaid="_8cce2625-7a52-42ef-96d5-db0e4c7da8f8" name="(3R)-3-Hydroxybutanoyl-[acyl-carrier protein]" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04618</p> + <p>PubChem: 7208</p> + <p>formula: C4H7O2SR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8cce2625-7a52-42ef-96d5-db0e4c7da8f8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04618"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14NOS2R" hasOnlySubstanceUnits="false" id="C15972" metaid="_3fd82b2c-c386-4829-ada7-219cc46b41ee" name="Enzyme N6-(lipoyl)lysine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C15972</p> + <p>PubChem: 47205285</p> + <p>ChEBI: 80218</p> + <p>formula: C8H14NOS2R</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3fd82b2c-c386-4829-ada7-219cc46b41ee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C15972"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/80218"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16NOS2R" hasOnlySubstanceUnits="false" id="C15973" metaid="_5f63fe47-f67c-4de5-a0a6-30516e3598e8" name="Enzyme N6-(dihydrolipoyl)lysine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C15973</p> + <p>PubChem: 47205286</p> + <p>ChEBI: 80219</p> + <p>formula: C8H16NOS2R</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f63fe47-f67c-4de5-a0a6-30516e3598e8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C15973"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/80219"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H22N6O5S" hasOnlySubstanceUnits="false" id="C00019" metaid="_1ac67426-155a-4267-89d8-e319618c7490" name="S-Adenosyl-L-methionine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00019</p> + <p>KNApSAcK: C00007347</p> + <p>CAS: 29908-03-0</p> + <p>PubChem: 3321</p> + 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hasOnlySubstanceUnits="false" id="C00139" metaid="_47ecc99d-1f96-4bc8-a5c0-38a1644ae438" name="Oxidized ferredoxin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00139</p> + <p>PubChem: 3439</p> + <p>ChEBI: 17908</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_47ecc99d-1f96-4bc8-a5c0-38a1644ae438"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00139"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17908"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C02430" metaid="_39d1e0d1-323f-407a-b415-6ed0815c23da" name="L-Methionyl-tRNA" sboTerm="SBO:0000240"> + <notes> + <body 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<rdf:Description rdf:about="#a8428130-97c9-44eb-8091-1ae76ca98f1e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C06481"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/13170 74589"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10O6" hasOnlySubstanceUnits="false" id="C00944" metaid="ce0229ea-99b6-40d7-adf1-aca135f490d0" name="3-Dehydroquinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00944</p> + <p>KNApSAcK: C00019664</p> + <p>PubChem: 4196</p> + <p>3DMET: B01356</p> + <p>PDB-CCD: DQA</p> + <p>ChEBI: 17947 32364</p> + <p>NIKKAJI: J93.942K</p> + <p>formula: C7H10O6</p> + <p>weight: 190.1507</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ce0229ea-99b6-40d7-adf1-aca135f490d0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00944"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00019664"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01356"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/DQA"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17947 32364"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O4" hasOnlySubstanceUnits="false" id="C06007" metaid="_88db8422-8831-4575-a83d-1c758d106ad6" name="(R)-2,3-Dihydroxy-3-methylpentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C06007</p> + <p>PubChem: 8280</p> + <p>3DMET: B05146</p> + 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hasOnlySubstanceUnits="false" id="C06006" metaid="f215f9eb-1eb6-4474-af05-0b4400130849" name="(S)-2-Aceto-2-hydroxybutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C06006</p> + <p>PubChem: 8279</p> + <p>3DMET: B01948</p> + <p>ChEBI: 27681 49256</p> + <p>LIPIDMAPS: LMFA01050383</p> + <p>NIKKAJI: J372.593F</p> + <p>formula: C6H10O4</p> + <p>weight: 146.1412</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f215f9eb-1eb6-4474-af05-0b4400130849"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C06006"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01948"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/27681 49256"/> + <rdf:li rdf:resource="https://identifiers.org/LIPIDMAPS/LMFA01050383"/> + </rdf:Bag> + </bqbiol:is> + 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fbc:chemicalFormula="C6H9N3O" hasOnlySubstanceUnits="false" id="C01929" metaid="a449d646-9a10-481c-8efa-6b64f0cba675" name="L-Histidinal" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01929</p> + <p>KNApSAcK: C00007495</p> + <p>PubChem: 5035</p> + <p>3DMET: B01518</p> + <p>PDB-CCD: HSV</p> + <p>ChEBI: 27676</p> + <p>NIKKAJI: J36.234D</p> + <p>formula: C6H9N3O</p> + <p>weight: 139.1552</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a449d646-9a10-481c-8efa-6b64f0cba675"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01929"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007495"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01518"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/HSV"/> + <rdf:li 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rdf:resource="https://identifiers.org/kegg.compound/C00719"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007291"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/107-43-7"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01318"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/BET"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17750"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8O4" hasOnlySubstanceUnits="false" id="C06010" metaid="_421cc162-bb48-4e03-9b85-d519c4e5e180" name="(S)-2-Acetolactate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C06010</p> + <p>PubChem: 8282</p> + <p>3DMET: B01949</p> + <p>PDB-CCD: X2X</p> + <p>ChEBI: 18409</p> + <p>LIPIDMAPS: LMFA01050460</p> + <p>NIKKAJI: J2.362.063D</p> + <p>formula: C5H8O4</p> 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xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04076</p> + <p>PubChem: 6771</p> + <p>3DMET: B00675</p> + <p>ChEBI: 17917</p> + <p>NIKKAJI: J1.136.598A</p> + <p>formula: C6H11NO3</p> + <p>weight: 145.1564</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_185fe4be-ce27-4446-8d59-c29300199e47"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04076"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B00675"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17917"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H9NO" hasOnlySubstanceUnits="false" id="C21873" metaid="_5b4cd4c6-e0ca-4c35-993c-d8f3591e5c42" name="2-Methylquinolin-4-ol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C21873</p> + <p>CAS: 607-67-0</p> + <p>formula: C10H9NO</p> + <p>weight: 159.1846</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5b4cd4c6-e0ca-4c35-993c-d8f3591e5c42"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C21873"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/607-67-0"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C01931" metaid="_374a77a2-557c-45d8-88d7-f617a100e80d" name="L-Lysyl-tRNA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: 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fbc:chemicalFormula="C21H35N7O13P2S" hasOnlySubstanceUnits="false" id="C00882" metaid="_1e253f5b-448c-4352-bc3e-71a453072e34" name="Dephospho-CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00882</p> + <p>KNApSAcK: C00007257</p> + <p>CAS: 3633-59-8</p> + <p>PubChem: 4138</p> + <p>3DMET: B04743</p> + <p>PDB-CCD: COD</p> + <p>ChEBI: 15468</p> + <p>LIPIDMAPS: LMFA07050315</p> + <p>formula: C21H35N7O13P2S</p> + <p>weight: 687.5542</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1e253f5b-448c-4352-bc3e-71a453072e34"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00882"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007257"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/3633-59-8"/> + <rdf:li 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rdf:resource="https://identifiers.org/3DMET/B05350"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/27650"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="false" id="C00407" metaid="e5cff1a9-ff23-45e4-88d4-24f3481d83eb" name="L-Isoleucine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00407</p> + <p>KNApSAcK: C00001374</p> + <p>CAS: 73-32-5</p> + <p>PubChem: 3697</p> + <p>3DMET: B01236</p> + <p>PDB-CCD: ILE</p> + <p>ChEBI: 17191</p> + <p>LIPIDMAPS: LMFA01100047</p> + <p>NIKKAJI: J2.818E</p> + <p>formula: C6H13NO2</p> + <p>weight: 131.1729</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description 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metaid="f75d3ec4-b1f5-4bc2-8481-dfb322318626" name="3-Hydroxypimeloyl-[acp] methyl ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C20377</p> + <p>PubChem: 163312115</p> + <p>formula: C8H13O4SR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f75d3ec4-b1f5-4bc2-8481-dfb322318626"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C20377"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11O4SR" hasOnlySubstanceUnits="false" id="C20376" metaid="a7c2b321-9233-4ce3-844c-34fec19ab7b3" name="3-Ketopimeloyl-[acp] methyl ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C20376</p> + <p>PubChem: 163312114</p> + <p>formula: C8H11O4SR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a7c2b321-9233-4ce3-844c-34fec19ab7b3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C20376"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H6O5" hasOnlySubstanceUnits="false" id="C22438" metaid="d3028683-bb08-49e6-a9f4-440badd169fb" name="3,5-Dehydroshikimate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C22438</p> + <p>formula: C7H6O5</p> + <p>weight: 170.1195</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d3028683-bb08-49e6-a9f4-440badd169fb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C22438"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H19O10P" hasOnlySubstanceUnits="false" id="C06188" metaid="_6d3d7a41-6b86-4bef-811b-d93542562791" name="Salicin 6-phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C06188</p> + <p>PubChem: 8439</p> + <p>3DMET: B01989</p> + <p>PDB-CCD: P53</p> + <p>ChEBI: 9003</p> + <p>NIKKAJI: J2.761.856A</p> + <p>formula: C13H19O10P</p> + <p>weight: 366.2577</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" 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xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_31c0d32c-9f53-401e-aa3d-27acbca592f0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C20375"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15O9P" hasOnlySubstanceUnits="false" id="C00644" metaid="_7cfbae22-a308-4081-8754-5c7cc6b8b06a" name="D-Mannitol 1-phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00644</p> + <p>KNApSAcK: C00019638</p> + <p>CAS: 15806-48-1</p> + <p>PubChem: 3917</p> + <p>3DMET: B04709</p> + <p>PDB-CCD: 44H</p> + <p>ChEBI: 16298</p> + <p>NIKKAJI: J923.291E</p> + <p>formula: C6H15O9P</p> + <p>weight: 262.1517</p> + </body> + </notes> + <annotation> + <rdf:RDF 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fbc:chemicalFormula="C11H20NO11P" hasOnlySubstanceUnits="false" id="C16698" metaid="_1be8aecf-3bcb-4d19-b4f8-0c0d83e8561d" name="N-Acetylmuramic acid 6-phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C16698</p> + <p>PubChem: 51091020</p> + <p>PDB-CCD: J79</p> + <p>ChEBI: 47968</p> + <p>NIKKAJI: J2.224.719K</p> + <p>formula: C11H20NO11P</p> + <p>weight: 373.2504</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1be8aecf-3bcb-4d19-b4f8-0c0d83e8561d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16698"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/J79"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/47968"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13O3SR" hasOnlySubstanceUnits="false" id="C19846" metaid="_10fe10b3-da8f-4992-bbe8-2e39ca6eac6f" name="Pimeloyl-[acyl-carrier protein] methyl ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C19846</p> + <p>PubChem: 135626313</p> + <p>formula: C8H13O3SR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_10fe10b3-da8f-4992-bbe8-2e39ca6eac6f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19846"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H33O2SR" hasOnlySubstanceUnits="false" id="C16219" metaid="_52b965dd-4d11-486e-8e3b-da44329e5f02" name="3-Oxostearoyl-[acp]" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C16219</p> + <p>PubChem: 47205527</p> + <p>ChEBI: 80386</p> + <p>formula: C18H33O2SR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_52b965dd-4d11-486e-8e3b-da44329e5f02"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16219"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/80386"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C02282" metaid="_16fb9247-cf9d-4e28-8127-770526d62b65" name="Glutaminyl-tRNA" sboTerm="SBO:0000240"> + <notes> + <body 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name="L-Arginyl-tRNA(Arg)" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C02163</p> + <p>PubChem: 5239</p> + <p>ChEBI: 18366</p> + <p>formula: C21H33N9O11PR(C5H8O6PR)n</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_17286e71-f59e-4b06-96d3-2f99fccc6218"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02163"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/18366"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C02047" metaid="f0b25514-a365-4324-9f56-8624bd224306" name="L-Leucyl-tRNA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C02047</p> + <p>PubChem: 5136</p> + <p>ChEBI: 16624</p> + <p>formula: C21H32N6O11PR(C5H8O6PR)n</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f0b25514-a365-4324-9f56-8624bd224306"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02047"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16624"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H20N4O10P3S" hasOnlySubstanceUnits="false" id="C03028" metaid="_2b310876-6c1e-40a7-95f8-577e2281863a" name="Thiamin triphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C03028</p> + <p>CAS: 15666-52-1 3475-65-8</p> + 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hasOnlySubstanceUnits="false" id="C16565" metaid="dd5b897d-201e-466e-b262-0f1aa550d61f" name="Aminopropylcadaverine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C16565</p> + <p>CAS: 56-19-9</p> + <p>PubChem: 51090894</p> + <p>ChEBI: 64860</p> + <p>NIKKAJI: J575.711H</p> + <p>formula: C8H21N3</p> + <p>weight: 159.2724</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dd5b897d-201e-466e-b262-0f1aa550d61f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16565"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/56-19-9"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/64860"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H18N4O4PS" hasOnlySubstanceUnits="false" id="C01081" metaid="eae670ac-4992-429b-9d52-380d03572c48" name="Thiamin monophosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01081</p> + <p>KNApSAcK: C00019628</p> + <p>PubChem: 4319</p> + <p>3DMET: B00237</p> + <p>PDB-CCD: TPS</p> + <p>ChEBI: 9533</p> + <p>NIKKAJI: J221.489J</p> + <p>formula: C12H18N4O4PS</p> + <p>weight: 345.3345</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eae670ac-4992-429b-9d52-380d03572c48"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01081"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00019628"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B00237"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/TPS"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/9533"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14NOS2R" hasOnlySubstanceUnits="false" id="C02051" metaid="de4d5719-ab33-41bf-a094-3298b614809f" name="Lipoylprotein" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C02051</p> + <p>PubChem: 5140</p> + <p>ChEBI: 15804</p> + <p>formula: C8H14NOS2R</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#de4d5719-ab33-41bf-a094-3298b614809f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02051"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/15804"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11" hasOnlySubstanceUnits="false" id="C01083" metaid="_5b5def2a-7ef3-45e6-b2c7-2094d8ac4d6a" name="alpha,alpha-Trehalose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01083</p> + <p>KNApSAcK: C00001152</p> + <p>CAS: 99-20-7</p> + <p>PubChem: 4320</p> + <p>3DMET: B01375</p> + <p>PDB-CCD: TRE</p> + <p>ChEBI: 16551</p> + <p>NIKKAJI: J4.965D</p> + <p>formula: C12H22O11</p> + <p>weight: 342.2965</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5b5def2a-7ef3-45e6-b2c7-2094d8ac4d6a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01083"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00001152"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/99-20-7"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01375"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/TRE"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16551"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="SeO3" hasOnlySubstanceUnits="false" id="C05684" metaid="_22007674-93bc-4a35-addb-c84b38ee179b" name="Selenite" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05684</p> + <p>PubChem: 7991</p> + <p>3DMET: B01885</p> + <p>ChEBI: 18212</p> + <p>NIKKAJI: J2.758.808E</p> + <p>formula: SeO3</p> + <p>weight: 126.9582</p> + </body> + </notes> + <annotation> + 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hasOnlySubstanceUnits="false" id="C01094" metaid="_25f4e550-c1c1-4605-9bbd-2d98c2d58343" name="D-Fructose 1-phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01094</p> + <p>KNApSAcK: C00019676</p> + <p>CAS: 15978-08-2</p> + <p>PubChem: 4329</p> + <p>3DMET: B04765</p> + <p>PDB-CCD: F1X</p> + <p>ChEBI: 18105 37515</p> + <p>NIKKAJI: J219.923H</p> + <p>formula: C6H13O9P</p> + <p>weight: 260.1358</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_25f4e550-c1c1-4605-9bbd-2d98c2d58343"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01094"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00019676"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/15978-08-2"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B04765"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/F1X"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/18105 37515"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13O9P" hasOnlySubstanceUnits="false" id="C01097" metaid="bebd009b-c278-47f0-9fc5-eae4d8ac9bbf" name="D-Tagatose 6-phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01097</p> + <p>PubChem: 4332</p> + <p>3DMET: B04767</p> + <p>PDB-CCD: TA6</p> + <p>ChEBI: 4251</p> + <p>NIKKAJI: J2.731.241A</p> + <p>formula: C6H13O9P</p> + <p>weight: 260.1358</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bebd009b-c278-47f0-9fc5-eae4d8ac9bbf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li 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xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_98729f17-5348-4429-b000-7448f3648b85"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05335"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/3211-76-5"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B05009"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/MSE"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/30021"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5OSR" hasOnlySubstanceUnits="false" id="C04246" metaid="_1c138bb9-0a63-43ba-87ef-368740d9ef46" name="But-2-enoyl-[acyl-carrier protein]" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04246</p> + <p>PubChem: 6911</p> + <p>formula: C4H5OSR</p> + </body> + 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6716</p> + <p>3DMET: B01710</p> + <p>PDB-CCD: LIP</p> + <p>ChEBI: 18169</p> + <p>NIKKAJI: J373.685G</p> + <p>formula: C6H13O9P</p> + <p>weight: 260.1358</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d5d48f3d-4b4a-40c4-b92f-606afe0570e0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04006"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01710"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/LIP"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/18169"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2Se" hasOnlySubstanceUnits="false" id="C05698" metaid="a87560e8-32f9-4902-ab6e-b84748e422ad" name="Selenohomocysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05698</p> + <p>PubChem: 8005</p> + <p>3DMET: B05100</p> + <p>ChEBI: 9096</p> + <p>NIKKAJI: J1.427.504E</p> + <p>formula: C4H9NO2Se</p> + <p>weight: 182.0798</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a87560e8-32f9-4902-ab6e-b84748e422ad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05698"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B05100"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/9096"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H39N9O12" hasOnlySubstanceUnits="false" id="C04489" metaid="_6c2615f3-4a23-4984-89ab-838ac0b0288e" name="5-Methyltetrahydropteroyltri-L-glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04489</p> + <p>PubChem: 7108</p> + <p>ChEBI: 17614</p> + <p>NIKKAJI: J2.751.522C</p> + <p>formula: C30H39N9O12</p> + <p>weight: 717.6838</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6c2615f3-4a23-4984-89ab-838ac0b0288e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04489"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17614"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C05336" metaid="_271ca5fc-5228-4e90-801e-8ae1814b2bc3" name="Selenomethionyl-tRNA(Met)" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05336</p> + <p>PubChem: 7714</p> + <p>ChEBI: 9100</p> + <p>formula: C20H30N6O11PSeR(C5H8O6PR)n</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_271ca5fc-5228-4e90-801e-8ae1814b2bc3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05336"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/9100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35O2SR" hasOnlySubstanceUnits="false" id="C16220" metaid="edc34e3d-5a09-4f81-ac4b-6786a68c6105" name="(R)-3-Hydroxyoctadecanoyl-[acp]" sboTerm="SBO:0000240"> + <notes> + 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47205529</p> + <p>ChEBI: 80388</p> + <p>formula: C18H33OSR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d755fbcc-953f-418b-9394-92f5045344f4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16221"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/80388"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H91O4P" hasOnlySubstanceUnits="false" id="C17556" metaid="b39845b4-75cf-4a57-913e-33d6a203c62e" name="di-trans,poly-cis-Undecaprenyl phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C17556</p> + <p>PubChem: 96023901</p> + <p>ChEBI: 60468</p> + <p>LIPIDMAPS: LMPR03020001</p> + 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+ <p>PubChem: 7620</p> + <p>formula: C12H23OSR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4728dfa3-97dc-4f56-9248-2045bd4a3d3d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05223"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15N2O9P" hasOnlySubstanceUnits="false" id="C04376" metaid="_53390ea6-e931-46c5-928c-dd79dd753bf5" name="5'-Phosphoribosyl-N-formylglycinamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04376</p> + <p>KNApSAcK: C00019642</p> + <p>CAS: 349-34-8</p> + <p>PubChem: 7017</p> + <p>3DMET: B04939</p> + <p>PDB-CCD: FGR</p> + <p>ChEBI: 18272</p> + <p>NIKKAJI: J40.075K</p> + <p>formula: C8H15N2O9P</p> + <p>weight: 314.1865</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_53390ea6-e931-46c5-928c-dd79dd753bf5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04376"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00019642"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/349-34-8"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B04939"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/FGR"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/18272"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12NO8P" hasOnlySubstanceUnits="false" id="C04133" metaid="_0bf32e72-ae97-48fe-ad5a-bb164505d08b" name="N-Acetyl-L-glutamate 5-phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04133</p> + <p>PubChem: 6819</p> + <p>3DMET: B00683</p> + <p>PDB-CCD: X2W</p> + <p>ChEBI: 16878</p> + <p>NIKKAJI: J37.496B</p> + <p>formula: C7H12NO8P</p> + <p>weight: 269.1458</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0bf32e72-ae97-48fe-ad5a-bb164505d08b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04133"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B00683"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/X2W"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16878"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13O9P" hasOnlySubstanceUnits="false" id="C05345" metaid="_796df8e4-3bed-4406-be2d-1e81d8a291e4" name="beta-D-Fructose 6-phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05345</p> + <p>KNApSAcK: C00019548</p> + <p>PubChem: 7723</p> + <p>3DMET: B01846</p> + <p>PDB-CCD: F6P</p> + <p>ChEBI: 16084</p> + <p>NIKKAJI: J879.002G</p> + <p>formula: C6H13O9P</p> + <p>weight: 260.1358</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_796df8e4-3bed-4406-be2d-1e81d8a291e4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05345"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00019548"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01846"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/F6P"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16084"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H45N6O16P" hasOnlySubstanceUnits="false" id="C04377" metaid="f2768c35-4a85-4a96-b817-d76487b595d8" name="5,10-Methylenetetrahydromethanopterin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04377</p> + <p>PubChem: 7018</p> + <p>3DMET: B01737</p> + <p>PDB-CCD: H4M</p> + <p>ChEBI: 16568</p> + <p>formula: C31H45N6O16P</p> + <p>weight: 788.6934</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f2768c35-4a85-4a96-b817-d76487b595d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04377"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01737"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/H4M"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16568"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H20NO4S2R" hasOnlySubstanceUnits="false" id="C16254" metaid="_04a4877c-84f4-49fc-a603-50fba7973d03" name="[Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C16254</p> + <p>PubChem: 47205562</p> + <p>ChEBI: 80403</p> + <p>formula: C12H20NO4S2R</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_04a4877c-84f4-49fc-a603-50fba7973d03"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16254"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/80403"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18O5S" hasOnlySubstanceUnits="false" id="C17222" metaid="_102278fe-9182-4282-8f57-402e479720b8" name="2-(5'-Methylthio)pentylmalic acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C17222</p> + <p>KNApSAcK: C00007642</p> + <p>PubChem: 96023630</p> + <p>ChEBI: 80969</p> + <p>NIKKAJI: J2.806.003C</p> + <p>formula: C10H18O5S</p> + <p>weight: 250.3119</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_102278fe-9182-4282-8f57-402e479720b8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C17222"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007642"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/80969"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18NO2S2R" hasOnlySubstanceUnits="false" id="C16255" metaid="c2612d43-407a-43ba-9054-88718d8a003d" name="[Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C16255</p> + <p>PubChem: 47205563</p> + <p>ChEBI: 80404</p> + <p>LIPIDMAPS: LMFA08020202</p> + <p>formula: C10H18NO2S2R</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c2612d43-407a-43ba-9054-88718d8a003d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16255"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/80404"/> + <rdf:li rdf:resource="https://identifiers.org/LIPIDMAPS/LMFA08020202"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18O5S" hasOnlySubstanceUnits="false" id="C17223" metaid="ae105d81-4ea0-49c9-a48a-4f99cce1ff51" name="3-(5'-Methylthio)pentylmalic acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C17223</p> + <p>PubChem: 96023631</p> + <p>ChEBI: 80970</p> + <p>NIKKAJI: J2.806.004A</p> + <p>formula: C10H18O5S</p> + <p>weight: 250.3119</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ae105d81-4ea0-49c9-a48a-4f99cce1ff51"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C17223"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/80970"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H20O5S" hasOnlySubstanceUnits="false" id="C17226" metaid="d90eebaf-8e08-4c4b-81bf-fd60d1c662fc" name="2-(6'-Methylthio)hexylmalic acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C17226</p> + <p>KNApSAcK: C00007653</p> + <p>PubChem: 96023634</p> + <p>ChEBI: 80972</p> + <p>NIKKAJI: J2.806.057B</p> + <p>formula: C11H20O5S</p> + <p>weight: 264.3385</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d90eebaf-8e08-4c4b-81bf-fd60d1c662fc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C17226"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007653"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/80972"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H20O5S" hasOnlySubstanceUnits="false" id="C17227" metaid="a300b325-bbc3-403f-abc9-d76e6fe06a7b" name="3-(6'-Methylthio)hexylmalic acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C17227</p> + <p>PubChem: 96023635</p> + <p>ChEBI: 80973</p> + <p>NIKKAJI: J2.806.075K</p> + <p>formula: C11H20O5S</p> + <p>weight: 264.3385</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a300b325-bbc3-403f-abc9-d76e6fe06a7b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C17227"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/80973"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C03294" metaid="bf19718a-3c17-4710-8209-b724911d3549" name="N-Formylmethionyl-tRNA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C03294</p> + <p>PubChem: 6151</p> + <p>ChEBI: 17119</p> + <p>formula: C21H30N6O12PSR(C5H8O6PR)n</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bf19718a-3c17-4710-8209-b724911d3549"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03294"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17119"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9N4O5PR2" hasOnlySubstanceUnits="false" id="C04261" metaid="_49c8f6fb-7b4b-45d5-aca3-48f54f2c88a1" name="Protein N(pi)-phospho-L-histidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04261</p> + <p>PubChem: 6926</p> + <p>formula: C7H9N4O5PR2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49c8f6fb-7b4b-45d5-aca3-48f54f2c88a1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04261"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H11O8P" hasOnlySubstanceUnits="false" id="C03175" metaid="_6211f490-84d7-4e01-ad2e-f40c3a849d3b" name="Shikimate 3-phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C03175</p> + <p>KNApSAcK: C00000002</p> + <p>PubChem: 6057</p> + <p>3DMET: B01636</p> + <p>PDB-CCD: S3P</p> + <p>ChEBI: 17052</p> + <p>NIKKAJI: J746.034A</p> + <p>formula: C7H11O8P</p> + <p>weight: 254.1312</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6211f490-84d7-4e01-ad2e-f40c3a849d3b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03175"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00000002"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01636"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/S3P"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17052"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H37N9O12" hasOnlySubstanceUnits="false" id="C04144" metaid="_7eae7a16-97f0-4fba-a1f0-1ed11195cc30" name="Tetrahydropteroyltri-L-glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04144</p> + <p>PubChem: 6829</p> + <p>PDB-CCD: 39S</p> + <p>ChEBI: 17420</p> + <p>NIKKAJI: J2.747.003C</p> + <p>formula: C29H37N9O12</p> + <p>weight: 703.6572</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7eae7a16-97f0-4fba-a1f0-1ed11195cc30"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04144"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/39S"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17420"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C05359" metaid="_0370943d-0b8b-4fe0-8a3f-27aa616999e0" name="e-" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05359</p> + <p>PubChem: 7736</p> + <p>ChEBI: 10545</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0370943d-0b8b-4fe0-8a3f-27aa616999e0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05359"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/10545"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12O5S" hasOnlySubstanceUnits="false" id="C17210" metaid="a795afb8-f490-4522-b4ae-772c2195d110" name="2-(2'-Methylthio)ethylmalic acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C17210</p> + <p>KNApSAcK: C00007647</p> + <p>PubChem: 96023618</p> + <p>ChEBI: 50261</p> + <p>NIKKAJI: J2.805.977I</p> + <p>formula: C7H12O5S</p> + <p>weight: 208.2322</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a795afb8-f490-4522-b4ae-772c2195d110"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C17210"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007647"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/50261"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12O5S" hasOnlySubstanceUnits="false" id="C17212" metaid="_732a29f9-f650-4097-97cd-1cdfac88f4df" name="3-(2'-Methylthio)ethylmalic acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C17212</p> + <p>PubChem: 96023620</p> + <p>ChEBI: 80963</p> + <p>NIKKAJI: J2.805.980I</p> + <p>formula: C7H12O5S</p> + <p>weight: 208.2322</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_732a29f9-f650-4097-97cd-1cdfac88f4df"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C17212"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/80963"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14O5S" hasOnlySubstanceUnits="false" id="C17214" metaid="_9aa5aa26-1212-4a68-bf09-a9abd8b8f50e" name="2-(3'-Methylthio)propylmalic acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C17214</p> + <p>KNApSAcK: C00007646</p> + <p>PubChem: 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xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C17215</p> + <p>PubChem: 96023623</p> + <p>ChEBI: 80964</p> + <p>NIKKAJI: J2.805.985J</p> + <p>formula: C8H14O5S</p> + <p>weight: 222.2588</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_816b5ed6-e376-46e4-a7fd-c5f8eadb48ce"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C17215"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/80964"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15O10P" hasOnlySubstanceUnits="false" id="C19878" metaid="c1969382-3a7d-47ae-9892-697920810b76" name="D-glycero-alpha-D-manno-Heptose 7-phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C19878</p> + <p>PubChem: 135626344</p> + <p>PDB-CCD: M7P</p> + <p>formula: C7H15O10P</p> + <p>weight: 290.1618</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c1969382-3a7d-47ae-9892-697920810b76"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C19878"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/M7P"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H16O5S" hasOnlySubstanceUnits="false" id="C17218" metaid="_99544bf3-b52c-4164-b72f-7527dac6b954" name="2-(4'-Methylthio)butylmalic acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + 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sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C17219</p> + <p>PubChem: 96023627</p> + <p>ChEBI: 80967</p> + <p>NIKKAJI: J2.806.001G</p> + <p>formula: C9H16O5S</p> + <p>weight: 236.2853</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2c114b93-7772-4cfb-88fa-7041c96616e1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C17219"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/80967"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O4" hasOnlySubstanceUnits="false" id="C04272" metaid="b454bd5c-22e8-49db-ac9f-c7d2ec452e8b" name="(R)-2,3-Dihydroxy-3-methylbutanoate" sboTerm="SBO:0000240"> 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fbc:chemicalFormula="C14H23N4O8P2S" hasOnlySubstanceUnits="false" id="C05125" metaid="b099da62-085e-46ce-9a3a-c94f68824cb9" name="2-(alpha-Hydroxyethyl)thiamine diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05125</p> + <p>PubChem: 7546</p> + <p>3DMET: B04982</p> + <p>ChEBI: 978</p> + <p>NIKKAJI: J683.157E</p> + <p>formula: C14H23N4O8P2S</p> + <p>weight: 469.3669</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b099da62-085e-46ce-9a3a-c94f68824cb9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05125"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B04982"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/978"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species 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name="2-(7'-Methylthio)heptylmalic acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C17230</p> + <p>KNApSAcK: C00007650</p> + <p>PubChem: 96023638</p> + <p>ChEBI: 80975</p> + <p>NIKKAJI: J2.806.128E</p> + <p>formula: C12H22O5S</p> + <p>weight: 278.3651</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5678a8e1-7b5f-41c8-8cbf-e9aa024ef84a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C17230"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007650"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/80975"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O5S" 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xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f68dc49b-cd10-48e7-b3ed-70aa4edaac60"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C22160"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="false" id="C00031" metaid="_46349695-4305-4148-880e-72618a6557d1" name="D-Glucose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00031</p> + <p>KNApSAcK: C00042470</p> + <p>CAS: 50-99-7 2280-44-6</p> + <p>PubChem: 3333</p> + <p>3DMET: B04623</p> + <p>PDB-CCD: BGC GLC</p> + <p>ChEBI: 4167</p> + <p>NIKKAJI: J4.109B</p> + <p>formula: C6H12O6</p> + <p>weight: 180.1559</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_46349695-4305-4148-880e-72618a6557d1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00031"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00042470"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/50-99-7 2280-44-6"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B04623"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/BGC GLC"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/4167"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9N2O3SR" hasOnlySubstanceUnits="false" id="C05729" metaid="_40c73e4f-bd1c-4850-bad1-c14308931d72" name="R-S-Cysteinylglycine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05729</p> + <p>PubChem: 8031</p> + <p>ChEBI: 8744</p> + <p>formula: C5H9N2O3SR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_40c73e4f-bd1c-4850-bad1-c14308931d72"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05729"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/8744"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O3" hasOnlySubstanceUnits="false" id="C00152" metaid="_402c15da-2b62-4a86-a3fd-9fbf981b7e2a" name="L-Asparagine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00152</p> + <p>KNApSAcK: C00001341 C00034027</p> + <p>CAS: 70-47-3</p> + <p>PubChem: 3452</p> + 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fbc:chemicalFormula="C9H15N5O3" hasOnlySubstanceUnits="false" id="C00272" metaid="cd0bdb48-3aa5-4e0f-889f-211c9a101902" name="Tetrahydrobiopterin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00272</p> + <p>KNApSAcK: C00018229</p> + <p>CAS: 17528-72-2</p> + <p>PubChem: 3570</p> + <p>3DMET: B04659</p> + <p>PDB-CCD: H4B</p> + <p>ChEBI: 15372 59560</p> + <p>NIKKAJI: J247.815C</p> + <p>formula: C9H15N5O3</p> + <p>weight: 241.2471</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cd0bdb48-3aa5-4e0f-889f-211c9a101902"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00272"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00018229"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/17528-72-2"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B04659"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/H4B"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/15372 59560"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C00030" metaid="ac19599f-f503-43c1-9f61-cba7cae9f728" name="Reduced acceptor" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00030</p> + <p>PubChem: 3332</p> + <p>ChEBI: 17499</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ac19599f-f503-43c1-9f61-cba7cae9f728"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00030"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17499"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O6" hasOnlySubstanceUnits="false" id="C00392" metaid="c82aefef-d56c-4952-816b-9f3bd5e89744" name="Mannitol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00392</p> + <p>KNApSAcK: C00001165</p> + <p>CAS: 69-65-8</p> + <p>PubChem: 3682</p> + <p>3DMET: B04676</p> + <p>PDB-CCD: MTL</p> + <p>ChEBI: 16899</p> + <p>NIKKAJI: J2.369H</p> + <p>formula: C6H14O6</p> + <p>weight: 182.1718</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c82aefef-d56c-4952-816b-9f3bd5e89744"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00392"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00001165"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/69-65-8"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B04676"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/MTL"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16899"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O2Se" hasOnlySubstanceUnits="false" id="C18902" metaid="_1ec50536-7cc4-4aea-9ef6-c91da9d6db9e" name="Methylselenic acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C18902</p> + <p>PubChem: 124489574</p> + <p>ChEBI: 77012</p> + <p>formula: CH4O2Se</p> + <p>weight: 127.0013</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1ec50536-7cc4-4aea-9ef6-c91da9d6db9e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C18902"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/77012"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H29N3O19P2" hasOnlySubstanceUnits="false" id="C04631" metaid="_396ba695-6169-499b-9e2c-ed89e3aa58b5" name="UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04631</p> + <p>KNApSAcK: C00019554</p> + <p>CAS: 70222-94-5</p> + <p>PubChem: 7220</p> + <p>3DMET: B01767</p> + <p>PDB-CCD: EPU</p> + <p>ChEBI: 68507</p> + <p>NIKKAJI: J711.509A</p> + <p>formula: 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metaid="_5176eadb-f4e2-4b46-949e-6998af03ba85" name="[Protein]-S8-aminomethyldihydrolipoyllysine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01242</p> + <p>PubChem: 4463</p> + <p>ChEBI: 16882</p> + <p>formula: C9H19N2OS2R</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5176eadb-f4e2-4b46-949e-6998af03ba85"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01242"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16882"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C03541" metaid="ce0f0173-58aa-4504-90a7-b34a82a510d8" name="THF-polyglutamate" sboTerm="SBO:0000240"> + 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compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C16636" metaid="d6a836c2-f31f-4aa2-92b5-bf357848be06" name="tRNA(Sec)" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C16636</p> + <p>PubChem: 51090962</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d6a836c2-f31f-4aa2-92b5-bf357848be06"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C16636"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H11NO4" hasOnlySubstanceUnits="false" id="C01250" metaid="_02f7cc87-d01b-4a0f-8cea-7b15234efa08" name="N-Acetyl-L-glutamate 5-semialdehyde" sboTerm="SBO:0000240"> + 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metaid="ed5770dc-02a0-425c-98ab-54cf4d07e737" name="Carbamoyl phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00169</p> + <p>KNApSAcK: C00007513</p> + <p>CAS: 590-55-6</p> + <p>PubChem: 3469</p> + <p>3DMET: B00050</p> + <p>PDB-CCD: CP</p> + <p>ChEBI: 17672</p> + <p>NIKKAJI: J39.574I</p> + <p>formula: CH4NO5P</p> + <p>weight: 141.0199</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ed5770dc-02a0-425c-98ab-54cf4d07e737"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00169"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007513"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/590-55-6"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B00050"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/CP"/> + <rdf:li 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name="3-Oxohexanoyl-[acp]" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05746</p> + <p>PubChem: 8041</p> + <p>ChEBI: 1642</p> + <p>formula: C6H9O2SR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8bb7e6a9-0ee6-490a-9809-1bdaf4eac3b2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05746"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/1642"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N2O4" hasOnlySubstanceUnits="false" id="C00295" metaid="_41b4841d-8a4e-43a9-87a5-c3832eaa8eed" name="Orotate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + 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</species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N5O13P2S" hasOnlySubstanceUnits="false" id="C00053" metaid="c31ddcea-f177-4bd6-bc7c-f08f44c94312" name="3'-Phosphoadenylyl sulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00053</p> + <p>KNApSAcK: C00007446</p> + <p>CAS: 482-67-7</p> + <p>PubChem: 3355</p> + <p>3DMET: B01139</p> + <p>PDB-CCD: PPS</p> + <p>ChEBI: 17980</p> + <p>NIKKAJI: J372.802A</p> + <p>formula: C10H15N5O13P2S</p> + <p>weight: 507.2643</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c31ddcea-f177-4bd6-bc7c-f08f44c94312"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00053"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007446"/> + 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rdf:resource="https://identifiers.org/kegg.compound/C01260"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01424"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/B4P"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17422"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H18O17P2R4" hasOnlySubstanceUnits="false" id="C05980" metaid="_61d3d9eb-9f4b-4a51-a50c-358dc5f3be29" name="Cardiolipin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05980</p> + <p>PubChem: 8259</p> + <p>ChEBI: 28494</p> + <p>NIKKAJI: J294.528B</p> + <p>formula: C13H18O17P2R4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description 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xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5eaa7600-5c9e-462f-8f5b-bcd44f6a8adc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04411"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00019691"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01741"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/IPM"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/35121 43468"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5O2SR" hasOnlySubstanceUnits="false" id="C05744" metaid="fc15235f-d408-41ba-91e9-c5e3f892298a" name="Acetoacetyl-[acp]" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05744</p> + <p>PubChem: 8039</p> + <p>ChEBI: 2393</p> + <p>formula: C4H5O2SR</p> + 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name="Hydroxymethylbilane" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01024</p> + <p>KNApSAcK: C00007374</p> + <p>CAS: 71861-60-4</p> + <p>PubChem: 4269</p> + <p>3DMET: B00223</p> + <p>ChEBI: 16645</p> + <p>NIKKAJI: J618.630K</p> + <p>formula: C40H46N4O17</p> + <p>weight: 854.8098</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a8672164-7926-4787-ba06-c182c2ebe6a4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01024"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007374"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/71861-60-4"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B00223"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16645"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2O2" hasOnlySubstanceUnits="false" id="C00058" metaid="c630d3d6-b1e9-4924-b082-1e321fc9c69e" name="Formate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00058</p> + <p>KNApSAcK: C00001182</p> + <p>CAS: 64-18-6</p> + <p>PubChem: 3358</p> + <p>3DMET: B01142</p> + <p>PDB-CCD: FMT</p> + <p>ChEBI: 15740 30751</p> + <p>LipidBank: DFA0001</p> + <p>NIKKAJI: J1.402H</p> + <p>formula: CH2O2</p> + <p>weight: 46.0254</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c630d3d6-b1e9-4924-b082-1e321fc9c69e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00058"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00001182"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/64-18-6"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01142"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/FMT"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/15740 30751"/> + <rdf:li rdf:resource="https://identifiers.org/LipidBank/DFA0001"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25N5O15P2" hasOnlySubstanceUnits="false" id="C04896" metaid="_4ac04249-4a70-4909-afb1-df58a5e127aa" name="5-(5-Phospho-D-ribosylaminoformimino)-1-(5-phosphoribosyl)-imidazole-4-carboxamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04896</p> + <p>PubChem: 7447</p> + <p>3DMET: B01802</p> + <p>PDB-CCD: GUO</p> + <p>ChEBI: 18302</p> + <p>NIKKAJI: 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rdf:resource="https://identifiers.org/kegg.compound/C00068"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00019627"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01146"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/TDP TPP"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/9532"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H20N2O2" hasOnlySubstanceUnits="false" id="C01037" metaid="a5197048-b521-4d1f-b2af-b4f383670ec7" name="7,8-Diaminononanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01037</p> + <p>PubChem: 4280</p> + <p>3DMET: B04758</p> + <p>ChEBI: 17830 2247</p> + <p>LIPIDMAPS: LMFA01100062</p> + <p>NIKKAJI: J511.020C</p> + <p>formula: C9H20N2O2</p> + <p>weight: 188.2673</p> + </body> + </notes> + <annotation> + <rdf:RDF 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<p>3DMET: B01183</p> + <p>PDB-CCD: ETA</p> + <p>ChEBI: 16000</p> + <p>NIKKAJI: J2.536D</p> + <p>formula: C2H7NO</p> + <p>weight: 61.0831</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e2302a3f-3ee6-4c08-b2d2-a8a5195a1544"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00189"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007279"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/141-43-5"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01183"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/ETA"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16000"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H41N8O17P3S" hasOnlySubstanceUnits="false" id="C02247" metaid="cd68c297-83c3-4648-bffe-692ca3f581ed" name="Anthraniloyl-CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C02247</p> + <p>PubChem: 5310</p> + <p>PDB-CCD: COW</p> + <p>ChEBI: 15472</p> + <p>LIPIDMAPS: LMFA07050287</p> + <p>NIKKAJI: J653.552F</p> + <p>formula: C28H41N8O17P3S</p> + <p>weight: 886.6548</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cd68c297-83c3-4648-bffe-692ca3f581ed"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C02247"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/COW"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/15472"/> + <rdf:li rdf:resource="https://identifiers.org/LIPIDMAPS/LMFA07050287"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21OSR" hasOnlySubstanceUnits="false" id="C05758" metaid="_3fff999e-4acf-4d69-b897-e2a75ad9e631" name="trans-Dodec-2-enoyl-[acp]" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05758</p> + <p>PubChem: 8053</p> + <p>ChEBI: 10725</p> + <p>formula: C12H21OSR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3fff999e-4acf-4d69-b897-e2a75ad9e631"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05758"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/10725"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species 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fbc:chemicalFormula="C4H9NO3" hasOnlySubstanceUnits="false" id="C00188" metaid="d08d064a-d146-4d49-8f9a-c59a827a3370" name="L-Threonine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00188</p> + <p>KNApSAcK: C00001394</p> + <p>CAS: 72-19-5</p> + <p>PubChem: 3488</p> + <p>3DMET: B01182</p> + <p>PDB-CCD: THR</p> + <p>ChEBI: 16857</p> + <p>NIKKAJI: J21.883I</p> + <p>formula: C4H9NO3</p> + <p>weight: 119.1192</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d08d064a-d146-4d49-8f9a-c59a827a3370"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00188"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00001394"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/72-19-5"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01182"/> + 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rdf:resource="https://identifiers.org/ChEBI/1637"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3" hasOnlySubstanceUnits="false" id="C00065" metaid="_8790094c-da29-4d4b-afab-489a1cce3ce9" name="L-Serine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00065</p> + <p>KNApSAcK: C00001393</p> + <p>CAS: 56-45-1</p> + <p>PubChem: 3365</p> + <p>3DMET: B01145</p> + <p>PDB-CCD: SER</p> + <p>ChEBI: 17115</p> + <p>NIKKAJI: J1.195I</p> + <p>formula: C3H7NO3</p> + <p>weight: 105.0926</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8790094c-da29-4d4b-afab-489a1cce3ce9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00065"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00001393"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/56-45-1"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01145"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/SER"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17115"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23O2SR" hasOnlySubstanceUnits="false" id="C05757" metaid="ab1d7286-81ed-408b-a81b-4e97ed8ddd3d" name="(R)-3-Hydroxydodecanoyl-[acp]" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05757</p> + <p>PubChem: 8052</p> + <p>ChEBI: 325</p> + <p>formula: C12H23O2SR</p> + </body> + </notes> + <annotation> + <rdf:RDF 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</rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O4" hasOnlySubstanceUnits="false" id="C14463" metaid="b9b1b44d-9872-46b6-bd0d-e34b9aa7f5b3" name="(R)-3-Hydroxy-3-methyl-2-oxopentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C14463</p> + <p>PubChem: 17395463</p> + <p>ChEBI: 34008 49257</p> + <p>LIPIDMAPS: LMFA01050457</p> + <p>NIKKAJI: J2.788.388E</p> + <p>formula: C6H10O4</p> + <p>weight: 146.1412</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b9b1b44d-9872-46b6-bd0d-e34b9aa7f5b3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C14463"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/34008 49257"/> + <rdf:li rdf:resource="https://identifiers.org/LIPIDMAPS/LMFA01050457"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O2SR2" hasOnlySubstanceUnits="false" id="C01271" metaid="_11580088-aaf4-4e2b-b8a1-984bfc5bf212" name="(3R)-3-Hydroxyacyl-[acyl-carrier protein]" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01271</p> + <p>PubChem: 4490</p> + <p>formula: C3H4O2SR2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_11580088-aaf4-4e2b-b8a1-984bfc5bf212"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01271"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13O2SR" hasOnlySubstanceUnits="false" id="C05750" metaid="af74faea-b29d-4568-84fa-aa6648a9a258" name="3-Oxooctanoyl-[acp]" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05750</p> + <p>PubChem: 8045</p> + <p>ChEBI: 1646</p> + <p>formula: C8H13O2SR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#af74faea-b29d-4568-84fa-aa6648a9a258"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05750"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/1646"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13OSR" hasOnlySubstanceUnits="false" id="C05751" metaid="_5b7d8e3a-57ce-49e4-a07f-9577c59954c2" name="trans-Oct-2-enoyl-[acp]" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05751</p> + <p>PubChem: 8046</p> + <p>formula: C8H13OSR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5b7d8e3a-57ce-49e4-a07f-9577c59954c2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05751"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H21N3O8S" hasOnlySubstanceUnits="false" id="C03451" metaid="_7580f25a-30cb-4f7d-98eb-9966e37b14e0" name="(R)-S-Lactoylglutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C03451</p> + <p>PubChem: 6272</p> + <p>3DMET: B01661</p> + <p>ChEBI: 15694</p> + <p>NIKKAJI: J524.698I</p> + <p>formula: C13H21N3O8S</p> + <p>weight: 379.3861</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7580f25a-30cb-4f7d-98eb-9966e37b14e0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03451"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01661"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/15694"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17OSR" hasOnlySubstanceUnits="false" id="C05754" metaid="_2b12b41c-132c-4689-8a6b-c46a1646ad6c" name="trans-Dec-2-enoyl-[acp]" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05754</p> + <p>PubChem: 8049</p> + <p>ChEBI: 10724</p> + <p>formula: C10H17OSR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2b12b41c-132c-4689-8a6b-c46a1646ad6c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05754"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/10724"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H18N2O7" hasOnlySubstanceUnits="false" id="C04421" metaid="dc087689-ecab-41ec-a348-d299485bffed" name="N-Succinyl-LL-2,6-diaminoheptanedioate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04421</p> + <p>KNApSAcK: C00007597</p> + <p>PubChem: 7053</p> + <p>3DMET: B01743</p> + <p>ChEBI: 165894 17279</p> + <p>NIKKAJI: J978.287G</p> + <p>formula: C11H18N2O7</p> + <p>weight: 290.2698</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dc087689-ecab-41ec-a348-d299485bffed"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04421"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007597"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01743"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/165894 17279"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H19OSR" hasOnlySubstanceUnits="false" id="C05755" metaid="_2ee8919d-13c6-4ab3-8d68-02814bfb11dc" name="Decanoyl-[acp]" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05755</p> + <p>PubChem: 8050</p> + <p>ChEBI: 4349</p> + <p>formula: C10H19OSR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2ee8919d-13c6-4ab3-8d68-02814bfb11dc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05755"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/4349"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15OSR" hasOnlySubstanceUnits="false" id="C05752" metaid="f6c62785-fcc8-4347-88d0-d5d59616d40c" name="Octanoyl-[acp]" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05752</p> + <p>PubChem: 8047</p> + <p>ChEBI: 7725</p> + <p>formula: C8H15OSR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f6c62785-fcc8-4347-88d0-d5d59616d40c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05752"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/7725"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11N2O6P" hasOnlySubstanceUnits="false" id="C04666" metaid="_75d60452-2431-4f9a-afd0-6fe7d0239f72" name="D-erythro-1-(Imidazol-4-yl)glycerol 3-phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04666</p> + <p>KNApSAcK: C00007478</p> + <p>PubChem: 7249</p> + <p>3DMET: B01771</p> + <p>PDB-CCD: IYP</p> + <p>ChEBI: 17805</p> + <p>NIKKAJI: J721.046I</p> + <p>formula: C6H11N2O6P</p> + <p>weight: 238.1351</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_75d60452-2431-4f9a-afd0-6fe7d0239f72"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04666"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007478"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01771"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/IYP"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17805"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O4" hasOnlySubstanceUnits="false" id="C05512" metaid="_693d45fe-c66f-41d2-a8a6-9604e981ae1e" name="Deoxyinosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05512</p> + <p>CAS: 890-38-0</p> + <p>PubChem: 7859</p> + <p>3DMET: B01869</p> + <p>PDB-CCD: 2ND</p> + <p>ChEBI: 28997</p> + <p>NIKKAJI: J128.131C</p> + <p>formula: C10H12N4O4</p> + <p>weight: 252.2267</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_693d45fe-c66f-41d2-a8a6-9604e981ae1e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05512"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/890-38-0"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01869"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/2ND"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/28997"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17O2SR" hasOnlySubstanceUnits="false" id="C05753" metaid="_405cb86e-c5e1-4736-984c-ea4ec6d232a4" name="3-Oxodecanoyl-[acp]" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05753</p> + <p>PubChem: 8048</p> + <p>ChEBI: 1634</p> + <p>formula: C10H17O2SR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_405cb86e-c5e1-4736-984c-ea4ec6d232a4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05753"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/1634"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H16NO9P" hasOnlySubstanceUnits="false" id="C04302" metaid="_8e647360-eedb-4b43-967d-d8198fd7602d" name="N-(5-Phospho-D-ribosyl)anthranilate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04302</p> + <p>KNApSAcK: C00007384</p> + <p>PubChem: 6961</p> + <p>3DMET: B01733</p> + <p>ChEBI: 18277 7091</p> + <p>NIKKAJI: J1.544.460F</p> + <p>formula: C12H16NO9P</p> + <p>weight: 349.2305</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8e647360-eedb-4b43-967d-d8198fd7602d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04302"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007384"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01733"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/18277 7091"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2" hasOnlySubstanceUnits="false" id="C00079" metaid="f63432ec-ac82-4b1d-a798-2e595a84c3c6" name="L-Phenylalanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00079</p> + <p>KNApSAcK: C00001386</p> + <p>CAS: 63-91-2</p> + <p>PubChem: 3379</p> + <p>3DMET: B01151</p> + <p>PDB-CCD: PHE</p> + <p>ChEBI: 17295</p> + <p>NIKKAJI: J9.175H</p> + <p>formula: C9H11NO2</p> + <p>weight: 165.1891</p> + </body> + </notes> + <annotation> + <rdf:RDF 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constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O2" hasOnlySubstanceUnits="false" id="C00078" metaid="_68eb41aa-7f61-4e30-a39e-ba1adf0867e4" name="L-Tryptophan" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00078</p> + <p>KNApSAcK: C00001396</p> + <p>CAS: 73-22-3</p> + <p>PubChem: 3378</p> + <p>3DMET: B01150</p> + <p>PDB-CCD: TRP</p> + <p>ChEBI: 16828</p> + <p>NIKKAJI: J9.181B</p> + <p>formula: C11H12N2O2</p> + <p>weight: 204.2252</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_68eb41aa-7f61-4e30-a39e-ba1adf0867e4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00078"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00001396"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/73-22-3"/> + <rdf:li 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metaid="_23d272dc-1a7e-486a-abfc-5a76fa14e858" name="UTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00075</p> + <p>CAS: 63-39-8</p> + <p>PubChem: 3375</p> + <p>3DMET: B01149</p> + <p>PDB-CCD: UTP</p> + <p>ChEBI: 15713</p> + <p>NIKKAJI: J4.827E</p> + <p>formula: C9H15N2O15P3</p> + <p>weight: 484.1411</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_23d272dc-1a7e-486a-abfc-5a76fa14e858"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00075"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/63-39-8"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01149"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/UTP"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/15713"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O6P" hasOnlySubstanceUnits="false" id="C00074" metaid="ade0621b-c2c2-43e0-a0fd-577d1f783e15" name="Phosphoenolpyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00074</p> + <p>KNApSAcK: C00000798</p> + <p>CAS: 138-08-9</p> + <p>PubChem: 3374</p> + <p>3DMET: B00019</p> + <p>PDB-CCD: PEP</p> + <p>ChEBI: 18021 44897</p> + <p>NIKKAJI: J9.706C</p> + <p>formula: C3H5O6P</p> + <p>weight: 168.042</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ade0621b-c2c2-43e0-a0fd-577d1f783e15"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00074"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00000798"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/138-08-9"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B00019"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/PEP"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/18021 44897"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S" hasOnlySubstanceUnits="false" id="C00073" metaid="bbf13680-5997-459a-bd72-a18359ea62d6" name="L-Methionine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00073</p> + <p>KNApSAcK: C00001379</p> + <p>CAS: 63-68-3</p> + <p>PubChem: 3373</p> + <p>3DMET: B01148</p> + <p>PDB-CCD: MET</p> + <p>ChEBI: 16643</p> + <p>NIKKAJI: J9.174J</p> + <p>formula: C5H11NO2S</p> + <p>weight: 149.2113</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bbf13680-5997-459a-bd72-a18359ea62d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00073"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00001379"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/63-68-3"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01148"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/MET"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16643"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H58FeN4O5" hasOnlySubstanceUnits="false" id="C15672" metaid="_59331a63-6313-4bb7-863b-0c2dde302026" name="Heme O" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C15672</p> + <p>CAS: 137397-56-9</p> + <p>PubChem: 47204998</p> + <p>ChEBI: 24480</p> + <p>formula: C49H58FeN4O5</p> + <p>weight: 838.8536</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_59331a63-6313-4bb7-863b-0c2dde302026"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C15672"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/137397-56-9"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/24480"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9O6P" hasOnlySubstanceUnits="false" id="C15556" metaid="_98453e8a-43fb-444c-ab5f-f96641e5c2c9" name="L-3,4-Dihydroxybutan-2-one 4-phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C15556</p> + <p>PubChem: 17396548</p> + <p>ChEBI: 50606</p> + <p>NIKKAJI: J1.171.796I</p> + <p>formula: C4H9O6P</p> + <p>weight: 184.0844</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_98453e8a-43fb-444c-ab5f-f96641e5c2c9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C15556"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/50606"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H27OSR" hasOnlySubstanceUnits="false" id="C05761" metaid="_88c4caea-561e-4bf1-8ae8-e20641454bbf" name="Tetradecanoyl-[acp]" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05761</p> + <p>PubChem: 8056</p> + <p>ChEBI: 50651</p> + <p>formula: C14H27OSR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_88c4caea-561e-4bf1-8ae8-e20641454bbf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05761"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/50651"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H29O2SR" hasOnlySubstanceUnits="false" id="C05762" metaid="_5757d534-b849-4c12-98f1-b9aae0dee932" name="3-Oxohexadecanoyl-[acp]" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05762</p> + <p>PubChem: 8057</p> + <p>ChEBI: 1639</p> + <p>formula: C16H29O2SR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5757d534-b849-4c12-98f1-b9aae0dee932"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05762"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/1639"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H25OSR" hasOnlySubstanceUnits="false" id="C05760" metaid="_7b4e8b71-ce68-4328-b3e9-8645271955a0" name="trans-Tetradec-2-enoyl-[acp]" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05760</p> + <p>PubChem: 8055</p> + <p>ChEBI: 10735</p> + <p>formula: C14H25OSR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7b4e8b71-ce68-4328-b3e9-8645271955a0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05760"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/10735"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C04432" metaid="bb1248be-5985-4b58-b4c2-4356ca0f5207" name="tRNA containing 6-isopentenyladenosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04432</p> + <p>PubChem: 7063</p> + <p>formula: C15H22N5O7P(C5H8O6PR)n(C5H8O6PR)n</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bb1248be-5985-4b58-b4c2-4356ca0f5207"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04432"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N4O8P" hasOnlySubstanceUnits="false" id="C04677" metaid="_19b87d24-bcd8-4a2a-bf49-40bc0247fbb3" name="1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04677</p> + <p>KNApSAcK: C00007383</p> + <p>CAS: 3031-94-5</p> + <p>PubChem: 7258</p> + <p>3DMET: B01774</p> + <p>PDB-CCD: AMZ</p> + <p>ChEBI: 18406</p> + <p>NIKKAJI: J7.665A</p> + <p>formula: C9H15N4O8P</p> + <p>weight: 338.2112</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_19b87d24-bcd8-4a2a-bf49-40bc0247fbb3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04677"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007383"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/3031-94-5"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01774"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/AMZ"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/18406"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H29OSR" hasOnlySubstanceUnits="false" id="C05763" metaid="_8a1d13c3-03e3-4bea-912f-56fbff071b8b" name="trans-Hexadec-2-enoyl-[acp]" sboTerm="SBO:0000240"> + <notes> + <body 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<p>ChEBI: 5697</p> + <p>formula: C16H31OSR</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4c648c15-505f-4bb9-af3b-14b84fdf6b75"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C05764"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/5697"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H46N4O16" hasOnlySubstanceUnits="false" id="C05778" metaid="cb09a721-f9ba-4635-91dd-211b871c8d81" name="Sirohydrochlorin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C05778</p> + <p>KNApSAcK: C00007315</p> + <p>CAS: 65207-12-7</p> + <p>PubChem: 8073</p> + <p>3DMET: B01893</p> + <p>ChEBI: 18023</p> + 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name="D-glycero-beta-D-manno-Heptose 7-phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C07836</p> + <p>PubChem: 10038</p> + <p>3DMET: B05257</p> + <p>PDB-CCD: M7B</p> + <p>ChEBI: 28723</p> + <p>NIKKAJI: J2.185.467K</p> + <p>formula: C7H15O10P</p> + <p>weight: 290.1618</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cd310250-0246-4462-a5f0-ef90a808fdda"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C07836"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B05257"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/M7B"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/28723"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13O9P" hasOnlySubstanceUnits="false" id="C00085" metaid="_263bab43-aa5f-47b9-b331-aa78641affda" name="D-Fructose 6-phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00085</p> + <p>KNApSAcK: C00007305</p> + <p>CAS: 643-13-0</p> + <p>PubChem: 3385</p> + <p>3DMET: B04628</p> + <p>PDB-CCD: F6P P6P</p> + <p>ChEBI: 15946 61553</p> + <p>NIKKAJI: J92.807K</p> + <p>formula: C6H13O9P</p> + <p>weight: 260.1358</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_263bab43-aa5f-47b9-b331-aa78641affda"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00085"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007305"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/643-13-0"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B04628"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/F6P P6P"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/15946 61553"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H38N7O19P3S" hasOnlySubstanceUnits="false" id="C00083" metaid="_840ea75e-1158-493b-a48e-c9a91493daa7" name="Malonyl-CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00083</p> + <p>KNApSAcK: C00007260</p> + <p>CAS: 524-14-1</p> + <p>PubChem: 3383</p> + <p>3DMET: B04627</p> + <p>PDB-CCD: MLC</p> + <p>ChEBI: 15531</p> + <p>LIPIDMAPS: LMFA07050345</p> + <p>NIKKAJI: J203.864A</p> + <p>formula: C24H38N7O19P3S</p> + <p>weight: 853.5803</p> + </body> + </notes> + <annotation> + <rdf:RDF 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sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00082</p> + <p>KNApSAcK: C00001397</p> + <p>CAS: 60-18-4</p> + <p>PubChem: 3382</p> + <p>3DMET: B01154</p> + <p>PDB-CCD: TYR</p> + <p>ChEBI: 17895</p> + <p>NIKKAJI: J9.173A</p> + <p>formula: C9H11NO3</p> + <p>weight: 181.1885</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_123b407b-c87b-4d37-a05e-06527ad21faa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00082"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00001397"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/60-18-4"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01154"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/TYR"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17895"/> + </rdf:Bag> + 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rdf:resource="https://identifiers.org/CAS/132-06-9"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01153"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/CZU ITT"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/16039"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="H" hasOnlySubstanceUnits="false" id="C00080" metaid="b3b639b8-d35a-4072-8066-5a5b54d5557a" name="H+" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C00080</p> + <p>PubChem: 3380</p> + <p>ChEBI: 15378 24636</p> + <p>formula: H</p> + <p>weight: 1.0079</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b3b639b8-d35a-4072-8066-5a5b54d5557a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00080"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/15378 24636"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H31N3O19P2" hasOnlySubstanceUnits="false" id="C01050" metaid="_928343a1-e2f4-4eca-bd49-c668f6eb9ca2" name="UDP-N-acetylmuramate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01050</p> + <p>PubChem: 4292</p> + <p>3DMET: B04759</p> + <p>PDB-CCD: EPZ</p> + <p>ChEBI: 70765</p> + <p>NIKKAJI: J710.466I</p> + <p>formula: C20H31N3O19P2</p> + <p>weight: 679.4164</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description 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name="2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04691</p> + <p>KNApSAcK: C00007497</p> + <p>CAS: 2627-73-8</p> + <p>PubChem: 7271</p> + <p>3DMET: B01776</p> + <p>ChEBI: 18150</p> + <p>NIKKAJI: J1.124.411D</p> + <p>formula: C7H13O10P</p> + <p>weight: 288.1459</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6315a6ef-e406-4ede-84d9-fdd2d38f99e9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04691"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007497"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/2627-73-8"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01776"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/18150"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H15NO9P" hasOnlySubstanceUnits="false" id="C01185" metaid="_9e52da50-c478-45fd-841d-f8226d86a2b4" name="Nicotinate D-ribonucleotide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C01185</p> + <p>KNApSAcK: C00007447</p> + <p>PubChem: 4411</p> + <p>3DMET: B01404</p> + <p>PDB-CCD: NCN</p> + <p>ChEBI: 15763</p> + <p>NIKKAJI: J1.028.429E</p> + <p>formula: C11H15NO9P</p> + <p>weight: 336.2119</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9e52da50-c478-45fd-841d-f8226d86a2b4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01185"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00007447"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01404"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/NCN"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/15763"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H92O7P2" hasOnlySubstanceUnits="false" id="C04574" metaid="_7cc53b32-0430-40ff-a183-9247ee2be63d" name="di-trans,poly-cis-Undecaprenyl diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04574</p> + <p>PubChem: 7175</p> + <p>3DMET: B01759</p> + <p>ChEBI: 18197</p> + <p>LIPIDMAPS: LMPR03030008</p> + <p>LipidBank: IIP0027</p> + <p>NIKKAJI: J1.283.781J</p> + <p>formula: C55H92O7P2</p> + <p>weight: 927.2623</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7cc53b32-0430-40ff-a183-9247ee2be63d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04574"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B01759"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/18197"/> + <rdf:li rdf:resource="https://identifiers.org/LIPIDMAPS/LMPR03030008"/> + <rdf:li rdf:resource="https://identifiers.org/LipidBank/IIP0027"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H18N4O6" hasOnlySubstanceUnits="false" id="C04332" metaid="_63de7cb2-58b8-4f87-9b9c-38f09154530f" name="6,7-Dimethyl-8-(D-ribityl)lumazine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04332</p> + <p>KNApSAcK: C00019640</p> + <p>CAS: 5118-16-1</p> + <p>PubChem: 6983</p> + <p>3DMET: B04936</p> + <p>PDB-CCD: DLZ</p> + <p>ChEBI: 17601</p> + <p>NIKKAJI: J643.571H</p> + <p>formula: C13H18N4O6</p> + <p>weight: 326.3052</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_63de7cb2-58b8-4f87-9b9c-38f09154530f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04332"/> + <rdf:li rdf:resource="https://identifiers.org/KNApSAcK/C00019640"/> + <rdf:li rdf:resource="https://identifiers.org/CAS/5118-16-1"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B04936"/> + <rdf:li rdf:resource="https://identifiers.org/PDB-CCD/DLZ"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/17601"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H17N4O9P" hasOnlySubstanceUnits="false" id="C04454" metaid="f220bfdb-e712-4d4b-a91e-62fa09e1e342" name="5-Amino-6-(5'-phospho-D-ribitylamino)uracil" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C04454</p> + <p>PubChem: 7081</p> + <p>3DMET: B04942</p> + <p>ChEBI: 18247</p> + <p>NIKKAJI: J1.722.458A</p> + <p>formula: C9H17N4O9P</p> + <p>weight: 356.2264</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f220bfdb-e712-4d4b-a91e-62fa09e1e342"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C04454"/> + <rdf:li rdf:resource="https://identifiers.org/3DMET/B04942"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/18247"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + <species boundaryCondition="false" compartment="default" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C03125" metaid="_6b20f2e9-a0e9-439f-b302-dd1895c3ffa3" name="L-Cysteinyl-tRNA(Cys)" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>kegg.compound: C03125</p> + <p>PubChem: 6018</p> + <p>ChEBI: 29152</p> + <p>formula: C18H26N6O11PSR(C5H8O6PR)n</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6b20f2e9-a0e9-439f-b302-dd1895c3ffa3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C03125"/> + <rdf:li rdf:resource="https://identifiers.org/ChEBI/29152"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + </species> + </listOfSpecies> + <listOfParameters> + <parameter constant="true" id="UPPER_BOUND_99999_0" units="mmol_per_gDW_per_hr" value="99999"/> + <parameter constant="true" id="LOWER_BOUND_0_0" units="mmol_per_gDW_per_hr" value="0"/> + <parameter constant="true" id="LOWER_BOUND_99999_0" units="mmol_per_gDW_per_hr" value="-99999"/> + </listOfParameters> + <listOfReactions> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04929" metaid="f5f80fe6-f246-4adf-9291-6164c5c06ef9" name="ATP:selenate adenylyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Selenocompound metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.7.4</p> + <p>GENE_ASSOCIATION: ( buc_BU423 ) OR ( buc_BU424 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f5f80fe6-f246-4adf-9291-6164c5c06ef9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU423"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU424"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C05697" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05686" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00209" metaid="_4afe6965-22ce-4e04-aa52-991df80f3d00" name="pyruvate:NAD+ 2-oxidoreductase (CoA-acetylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: ( buc_BU205 ) OR ( buc_BU206 ) OR ( buc_BU207 )</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU206"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU207"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU205"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + <speciesReference constant="true" species="C00022" stoichiometry="1"/> + <speciesReference constant="true" species="C00010" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00024" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02749" metaid="ef8a999f-f905-4438-8ca6-a8ac08349be2" name="2-deoxy-D-ribose 1-phosphate 1,5-phosphomutase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pentose phosphate pathway - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 5.4.2.7</p> + <p>GENE_ASSOCIATION: buc_BU542</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ef8a999f-f905-4438-8ca6-a8ac08349be2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.2.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU542"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00672" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00673" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00200" metaid="c7b80ac8-e43a-4e62-a75d-aa395640574d" name="ATP:pyruvate 2-O-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Pyruvate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycolysis / Gluconeogenesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.1.40</p> + <p>GENE_ASSOCIATION: buc_BU319</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c7b80ac8-e43a-4e62-a75d-aa395640574d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.40"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU319"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00022" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00074" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01773" metaid="ec0b73ec-46b0-4598-a14a-f75a1862dbfa" name="L-Homoserine:NAD+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Lysine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycine, serine and threonine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Cysteine and methionine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.3</p> + <p>GENE_ASSOCIATION: buc_BU194</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ec0b73ec-46b0-4598-a14a-f75a1862dbfa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU194"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00263" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00441" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01652" metaid="c6023841-3f83-45fa-9e73-f3d27b4b5b47" name="R01652" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.85</p> + <p>GENE_ASSOCIATION: buc_BUpL05</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c6023841-3f83-45fa-9e73-f3d27b4b5b47"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.85"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BUpL05"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00233" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C04236" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01775" metaid="d8c183a2-e2a6-49d7-8880-eda67772ae83" name="L-homoserine:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Lysine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycine, serine and threonine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Cysteine and methionine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.3</p> + <p>GENE_ASSOCIATION: buc_BU194</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d8c183a2-e2a6-49d7-8880-eda67772ae83"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU194"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + <speciesReference constant="true" species="C00263" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00441" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01655" metaid="b40fd82d-d087-4fca-bfe2-1e4dea44b2d0" name="5,10-Methenyltetrahydrofolate 5-hydrolase (decyclizing)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || One carbon pool by folate - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.5.4.9</p> + <p>GENE_ASSOCIATION: buc_BU486</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b40fd82d-d087-4fca-bfe2-1e4dea44b2d0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU486"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00445" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00234" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02864" metaid="bcd40531-ad37-402b-b70c-6285e30c34ab" name="S-Adenosyl-L-methionine:uroporphyrin-III C-methyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Porphyrin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.99.1.4</p> + <p>GENE_ASSOCIATION: buc_BU425</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bcd40531-ad37-402b-b70c-6285e30c34ab"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.99.1.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU425"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00748" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C14818" stoichiometry="1"/> + <speciesReference constant="true" species="C05778" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00688" metaid="f22a3db8-7d6c-46c2-8dae-929253bdedc9" name="L-phenylalanine:NAD+ oxidoreductase (deaminating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU101</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU101"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00079" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00166" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00014" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00689" metaid="_7938bee4-73ac-49fe-94b6-282ff413620a" name="L-Phenylalanine:oxygen oxidoreductase (deaminating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU101</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU101"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00007" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00079" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00166" stoichiometry="1"/> + <speciesReference constant="true" species="C00014" stoichiometry="1"/> + <speciesReference constant="true" species="C00027" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02748" metaid="fdc39e9d-fb53-47f8-a291-7c02e39a62d4" name="Deoxyinosine:orthophosphate ribosyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.4.2.1</p> + <p>GENE_ASSOCIATION: buc_BU541</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fdc39e9d-fb53-47f8-a291-7c02e39a62d4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU541"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C05512" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00262" stoichiometry="1"/> + <speciesReference constant="true" species="C00672" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00206" metaid="_56e26dfa-2825-4548-92f5-113e87568d23" name="ATP:pyruvate,phosphate phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU319</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU319"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00022" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00074" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01658" metaid="_68799231-0925-4cd4-a4ff-1ba3d159d5d1" name="Dimethylallyl-diphosphate:isopentenyl-diphosphate dimethylallyltranstransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Terpenoid backbone biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.5.1.1</p> + <p>GENE_ASSOCIATION: buc_BU465</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_68799231-0925-4cd4-a4ff-1ba3d159d5d1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU465"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00129" stoichiometry="1"/> + <speciesReference constant="true" species="C00235" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00341" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00328" metaid="_7136cc26-8b4c-4b42-b2bd-8517f64486b0" name="GDP phosphohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU434</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU434"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00035" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00144" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R12428" metaid="c835a612-c511-453b-b5e3-c91a8936b73d" name="octanoyl-[acp]:Glycine-cleavage-system-H N-octanoyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Lipoic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.1.181</p> + <p>GENE_ASSOCIATION: buc_BU268</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c835a612-c511-453b-b5e3-c91a8936b73d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.181"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU268"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C22157" stoichiometry="1"/> + <speciesReference constant="true" species="C05752" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C22159" stoichiometry="1"/> + <speciesReference constant="true" species="C00229" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R12427" metaid="_3119b3cf-dbac-4a9b-9f0c-84849249bd89" name="octanoyl-[acp]:lipoyl-carrier-protein-E2 N-octanoyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Lipoic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.1.181</p> + <p>GENE_ASSOCIATION: buc_BU268</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3119b3cf-dbac-4a9b-9f0c-84849249bd89"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.181"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU268"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C22158" stoichiometry="1"/> + <speciesReference constant="true" species="C05752" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00229" stoichiometry="1"/> + <speciesReference constant="true" species="C22160" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R12424" metaid="_0828e363-26a8-4c08-94c0-f8c0c6e587e4" name="[glycine cleavage system H]-N6-octanoyl-L-lysine:[Fe-S] cluster scaffold protein carrying a [4Fe-4S]2+ cluster sulfurtransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Lipoic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.8.1.8</p> + <p>GENE_ASSOCIATION: buc_BU269</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0828e363-26a8-4c08-94c0-f8c0c6e587e4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.1.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU269"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00080" stoichiometry="8"/> + <speciesReference constant="true" species="C22159" stoichiometry="1"/> + <speciesReference constant="true" species="C22150" stoichiometry="2"/> + <speciesReference constant="true" species="C22154" stoichiometry="1"/> + <speciesReference constant="true" species="C00019" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C14818" stoichiometry="4"/> + <speciesReference constant="true" species="C00073" stoichiometry="2"/> + <speciesReference constant="true" species="C05198" stoichiometry="2"/> + <speciesReference constant="true" species="C22155" stoichiometry="1"/> + <speciesReference constant="true" species="C22151" stoichiometry="2"/> + <speciesReference constant="true" species="C02972" stoichiometry="1"/> + <speciesReference constant="true" species="C00283" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00691" metaid="_169a7f77-3fb2-4b1e-8681-b2f03671ca56" name="L-arogenate hydro-lyase (decarboxylating L-phenylalanine-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.2.1.51</p> + <p>GENE_ASSOCIATION: buc_BU392</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_169a7f77-3fb2-4b1e-8681-b2f03671ca56"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU392"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00826" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00079" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R12423" metaid="_6fc2d95c-781d-4f5a-9e47-06f4203b2866" name="[lipoyl-carrier protein E2]-N6-(octanoyl)-L-lysine:[Fe-S] cluster scaffold protein carrying a [4Fe-4S]2+ cluster sulfurtransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Lipoic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.8.1.8</p> + <p>GENE_ASSOCIATION: buc_BU269</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6fc2d95c-781d-4f5a-9e47-06f4203b2866"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.1.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU269"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00080" stoichiometry="8"/> + <speciesReference constant="true" species="C22160" stoichiometry="1"/> + <speciesReference constant="true" species="C22150" stoichiometry="2"/> + <speciesReference constant="true" species="C22154" stoichiometry="1"/> + <speciesReference constant="true" species="C00019" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C14818" stoichiometry="4"/> + <speciesReference constant="true" species="C15973" stoichiometry="1"/> + <speciesReference constant="true" species="C00073" stoichiometry="2"/> + <speciesReference constant="true" species="C05198" stoichiometry="2"/> + <speciesReference constant="true" species="C22155" stoichiometry="1"/> + <speciesReference constant="true" species="C22151" stoichiometry="2"/> + <speciesReference constant="true" species="C00283" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00571" metaid="cf43f72f-961d-4e13-804a-f90af670618f" name="UTP:ammonia ligase (ADP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pyrimidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.4.2</p> + <p>GENE_ASSOCIATION: buc_BU416</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cf43f72f-961d-4e13-804a-f90af670618f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.4.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU416"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00075" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00014" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00063" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00692" metaid="_94e13eb9-eb48-497e-b0b0-48643ea217f1" name="L-phenylalanine:pyruvate aminotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU101</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU101"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00022" stoichiometry="1"/> + <speciesReference constant="true" species="C00079" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00166" stoichiometry="1"/> + <speciesReference constant="true" species="C00041" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00451" metaid="_31d55e2b-c930-450a-8e1f-082db9ab4005" name="meso-2,6-diaminoheptanedioate carboxy-lyase (L-lysine-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Lysine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || D-Amino acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.1.1.20</p> + <p>GENE_ASSOCIATION: buc_BU438</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_31d55e2b-c930-450a-8e1f-082db9ab4005"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU438"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00680" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00047" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R10122" metaid="_125cb085-fb23-424b-ac47-79b03bb936ad" name="pimelyl-[acyl-carrier protein]-methyl-ester:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biotin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.10</p> + <p>GENE_ASSOCIATION: buc_BU265</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_125cb085-fb23-424b-ac47-79b03bb936ad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU265"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C20378" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C19846" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00573" metaid="_788a048e-a5a1-40ad-bc39-e476f781578c" name="UTP:L-glutamine amido-ligase (ADP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pyrimidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.4.2</p> + <p>GENE_ASSOCIATION: buc_BU416</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_788a048e-a5a1-40ad-bc39-e476f781578c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.4.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU416"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00075" stoichiometry="1"/> + <speciesReference constant="true" species="C00064" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00063" stoichiometry="1"/> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00694" metaid="c21e7bf2-dca4-4d16-830f-9b5c6f984d37" name="L-Phenylalanine:2-oxoglutarate aminotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.6.1.9</p> + <p>GENE_ASSOCIATION: buc_BU101</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c21e7bf2-dca4-4d16-830f-9b5c6f984d37"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU101"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00026" stoichiometry="1"/> + <speciesReference constant="true" species="C00079" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00166" stoichiometry="1"/> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01528" metaid="_6f463c04-1979-4c91-ace6-43b09c5c5fa4" name="6-phospho-D-gluconate:NADP+ 2-oxidoreductase (decarboxylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glutathione metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pentose phosphate pathway - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.44</p> + <p>GENE_ASSOCIATION: buc_BU107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6f463c04-1979-4c91-ace6-43b09c5c5fa4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.44"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU107"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + <speciesReference constant="true" species="C00345" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00199" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02739" metaid="_93520f03-9a0c-4a49-a814-6da50415531c" name="alpha-D-Glucose 6-phosphate ketol-isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycolysis / Gluconeogenesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pentose phosphate pathway - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 5.3.1.9</p> + <p>GENE_ASSOCIATION: buc_BU573</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_93520f03-9a0c-4a49-a814-6da50415531c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU573"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00668" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C01172" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01529" metaid="_6ae26d9f-2eab-4288-ab8f-0001881d8604" name="D-Ribulose-5-phosphate 3-epimerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pentose phosphate pathway - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 5.1.3.1</p> + <p>GENE_ASSOCIATION: buc_BU537</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6ae26d9f-2eab-4288-ab8f-0001881d8604"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU537"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00199" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00231" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02738" metaid="_22d6ca72-6fb1-4e6a-bc51-a8081e3df115" name="protein-N(pi)-phosphohistidine:D-glucose 6-phosphotransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Amino sugar and nucleotide sugar metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycolysis / Gluconeogenesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.1.199</p> + <p>GENE_ASSOCIATION: ( buc_BU063 ) OR ( buc_BU356 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_22d6ca72-6fb1-4e6a-bc51-a8081e3df115"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.199"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU356"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU063"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04261" stoichiometry="1"/> + <speciesReference constant="true" species="C00031" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00615" stoichiometry="1"/> + <speciesReference constant="true" species="C00668" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01641" metaid="b1377c13-e348-4439-bc72-575b973ec66b" name="sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glycolaldehyde transferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pentose phosphate pathway - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.2.1.1</p> + <p>GENE_ASSOCIATION: buc_BU094</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b1377c13-e348-4439-bc72-575b973ec66b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.2.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU094"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05382" stoichiometry="1"/> + <speciesReference constant="true" species="C00118" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00117" stoichiometry="1"/> + <speciesReference constant="true" species="C00231" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R10120" metaid="_331f00fa-1476-48e1-ab43-88e8ad148844" name="3-hydroxypimeloyl-[acp]-methyl-ester:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biotin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.100</p> + <p>GENE_ASSOCIATION: buc_BU351</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_331f00fa-1476-48e1-ab43-88e8ad148844"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU351"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C20376" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C20377" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00673" metaid="_9d06aab0-0d9d-4364-bc0e-0f1f0ce17531" name="L-tryptophan indole-lyase (deaminating pyruvate-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: ( buc_BU277 ) OR ( buc_BU278 )</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU277"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU278"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00078" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00463" stoichiometry="1"/> + <speciesReference constant="true" species="C00014" stoichiometry="1"/> + <speciesReference constant="true" species="C00022" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03940" metaid="_8427c2e9-e53e-40fc-b399-7ebf7d0e57e0" name="10-Formyltetrahydrofolate:L-methionyl-tRNA N-formyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || One carbon pool by folate - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.1.2.9</p> + <p>GENE_ASSOCIATION: buc_BU497</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8427c2e9-e53e-40fc-b399-7ebf7d0e57e0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.2.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU497"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C02430" stoichiometry="1"/> + <speciesReference constant="true" species="C00234" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00101" stoichiometry="1"/> + <speciesReference constant="true" species="C03294" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00674" metaid="bf17bbbe-93ee-4e21-aa16-03e4fc4d0e55" name="L-serine hydro-lyase (adding indole L-tryptophan-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.2.1.20</p> + <p>GENE_ASSOCIATION: buc_BU278</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bf17bbbe-93ee-4e21-aa16-03e4fc4d0e55"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU278"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00065" stoichiometry="1"/> + <speciesReference constant="true" species="C00463" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00078" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01401" metaid="a557b283-ecb4-4c01-989c-93336b18db68" name="methylthioadenosine methylthioribohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Cysteine and methionine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.2.2.9</p> + <p>GENE_ASSOCIATION: buc_BU210</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a557b283-ecb4-4c01-989c-93336b18db68"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.2.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU210"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00170" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C03089" stoichiometry="1"/> + <speciesReference constant="true" species="C00147" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02735" metaid="_1a8fbaab-1509-4348-94c4-83f5d64b7961" name="LL-2,6-Diaminoheptanedioate 2-epimerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Lysine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || D-Amino acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 5.1.1.7</p> + <p>GENE_ASSOCIATION: buc_BU589</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1a8fbaab-1509-4348-94c4-83f5d64b7961"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU589"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00666" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00680" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01403" metaid="b6f25ab9-c01c-4302-ad9d-7c6a42ff9af0" name="acyl-[acyl-carrier-protein]:NAD+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.9</p> + <p>GENE_ASSOCIATION: buc_BU265</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b6f25ab9-c01c-4302-ad9d-7c6a42ff9af0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU265"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00173" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00693" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00315" metaid="_1996eed3-0dc8-4c97-8453-5e1b7d3a7501" name="ATP:acetate phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Pyruvate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Taurine and hypotaurine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Methane metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.2.1</p> + <p>GENE_ASSOCIATION: buc_BU175</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1996eed3-0dc8-4c97-8453-5e1b7d3a7501"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU175"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00033" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00227" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02734" metaid="c9f56ad7-52a7-4fbb-b6f6-35698c47d4ff" name="N-Succinyl-LL-2,6-diaminoheptanedioate amidohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Lysine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.5.1.18</p> + <p>GENE_ASSOCIATION: buc_BU095</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c9f56ad7-52a7-4fbb-b6f6-35698c47d4ff"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU095"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C04421" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00042" stoichiometry="1"/> + <speciesReference constant="true" species="C00666" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01404" metaid="fe8c7a32-0c98-4760-a03b-99582f3cc0a8" name="acyl-[acyl-carrier protein]:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.10</p> + <p>GENE_ASSOCIATION: buc_BU265</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fe8c7a32-0c98-4760-a03b-99582f3cc0a8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU265"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00173" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00693" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03947" metaid="_640a5762-7e4a-438e-8dd2-18d61ad1dc74" name="S-adenosyl-L-methionine:uroporphyrin-III C-methyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Porphyrin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.76</p> + <p>GENE_ASSOCIATION: buc_BU425</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_640a5762-7e4a-438e-8dd2-18d61ad1dc74"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.76"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU425"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C02463" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C05778" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02736" metaid="e82b4fc6-77ad-4156-a4cc-548069496035" name="beta-D-glucose-6-phosphate:NADP+ 1-oxoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glutathione metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pentose phosphate pathway - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.49 / 1.1.1.363</p> + <p>GENE_ASSOCIATION: buc_BU320</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e82b4fc6-77ad-4156-a4cc-548069496035"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.49 / 1.1.1.363"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU320"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01172" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C01236" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00317" metaid="_26061c89-c809-481a-8c70-c5fdb0f7b165" name="Acetyl phosphate phosphohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU175</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU175"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00227" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00033" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R10118" metaid="_626bfdd5-eb74-4528-85cc-f44667f490e0" name="glutaryl-[acp]-methyl-ester:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biotin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.10</p> + <p>GENE_ASSOCIATION: buc_BU265</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_626bfdd5-eb74-4528-85cc-f44667f490e0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU265"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C20374" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C20375" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R10115" metaid="cbffe6b6-0c81-417c-9182-636f2d88d5e8" name="malonyl-[acyl-carrier protein]-methyl-ester:malonyl-[acyl-carrier protein] C-acyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biotin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.1.41</p> + <p>GENE_ASSOCIATION: buc_BU092</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cbffe6b6-0c81-417c-9182-636f2d88d5e8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU092"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C19673" stoichiometry="1"/> + <speciesReference constant="true" species="C01209" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C20372" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00229" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R10116" metaid="_26d60613-639e-45f3-87bf-32857f244156" name="3-hydroxyglutaryl-[acp]-methyl-ester:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biotin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.100</p> + <p>GENE_ASSOCIATION: buc_BU351</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_26d60613-639e-45f3-87bf-32857f244156"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU351"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C20372" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C20373" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01770" metaid="_874bc740-63a6-452e-af7a-efac1a2e6f9d" name="inosine ribohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU541</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU541"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00294" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00121" stoichiometry="1"/> + <speciesReference constant="true" species="C00262" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02740" metaid="_074ab53d-726c-4c6b-97ba-3ef15252337c" name="alpha-D-Glucose 6-phosphate ketol-isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Amino sugar and nucleotide sugar metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycolysis / Gluconeogenesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of nucleotide sugars - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pentose phosphate pathway - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 5.3.1.9</p> + <p>GENE_ASSOCIATION: buc_BU573</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_074ab53d-726c-4c6b-97ba-3ef15252337c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU573"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00668" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05345" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01771" metaid="eb816d93-1d48-4d2a-8679-5507cf1abeee" name="ATP:L-homoserine O-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycine, serine and threonine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.1.39</p> + <p>GENE_ASSOCIATION: buc_BU193</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eb816d93-1d48-4d2a-8679-5507cf1abeee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.39"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU193"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00263" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C01102" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00320" metaid="_998bc5d3-dd92-4d5d-979c-9d441f6d36cf" name="diphosphate:acetate phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU175</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU175"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00033" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00227" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R09254" metaid="_9b1d3096-925d-4566-af35-ddd8e873ddca" name="L-tyrosine:pyruvate aminotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU101</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU101"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00082" stoichiometry="1"/> + <speciesReference constant="true" species="C00022" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00041" stoichiometry="1"/> + <speciesReference constant="true" species="C01179" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R10119" metaid="af7926ae-a5b0-40df-ad8f-5a8cca924a9a" name="glutaryl-[acp]-methyl-ester:malonyl-[acyl-carrier protein] C-acyltransferase (decarboxylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biotin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.1.41</p> + <p>GENE_ASSOCIATION: buc_BU092</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#af7926ae-a5b0-40df-ad8f-5a8cca924a9a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU092"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C20375" stoichiometry="1"/> + <speciesReference constant="true" species="C01209" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C20376" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00229" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R09372" metaid="f7de6999-538d-4419-81bb-73718b15340c" name="methaneselenol:NADP+ oxidoreductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Selenocompound metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.8.1.9</p> + <p>GENE_ASSOCIATION: buc_BU314</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f7de6999-538d-4419-81bb-73718b15340c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU314"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00080" stoichiometry="2"/> + <speciesReference constant="true" species="C00005" stoichiometry="2"/> + <speciesReference constant="true" species="C18902" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00006" stoichiometry="2"/> + <speciesReference constant="true" species="C05703" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00586" metaid="_75d0b5b1-724a-4ac0-b59e-1e809e19ee32" name="acetyl-CoA:L-serine O-acetyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Sulfur metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Cysteine and methionine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.1.30</p> + <p>GENE_ASSOCIATION: buc_BU054</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_75d0b5b1-724a-4ac0-b59e-1e809e19ee32"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.30"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU054"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00024" stoichiometry="1"/> + <speciesReference constant="true" species="C00065" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00979" stoichiometry="1"/> + <speciesReference constant="true" species="C00010" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00103" metaid="e5bb421f-f000-4ecf-8207-25b84330f42a" name="NAD+ phosphohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU446</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU446"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00455" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00104" metaid="_3e7e8c17-4b4c-439c-bdcf-745a9aea14be" name="ATP:NAD+ 2'-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nicotinate and nicotinamide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.1.23</p> + <p>GENE_ASSOCIATION: buc_BU185</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3e7e8c17-4b4c-439c-bdcf-745a9aea14be"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU185"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01677" metaid="_256e5213-84d0-482b-abc3-a3dadc6a2def" name="guanosine ribohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU541</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU541"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00387" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00121" stoichiometry="1"/> + <speciesReference constant="true" species="C00242" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00226" metaid="_0a654c65-dbd8-4097-9012-ce0a406e21f5" name="pyruvate:pyruvate acetaldehydetransferase (decarboxylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: C5-Branched dibasic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pantothenate and CoA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Valine, leucine and isoleucine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.2.1.6</p> + <p>GENE_ASSOCIATION: ( buc_BU225 ) OR ( buc_BU226 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0a654c65-dbd8-4097-9012-ce0a406e21f5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.2.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU225"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU226"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C06010" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00022" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02768" metaid="b6cb54d2-a123-4abc-8f3b-fe0b3ca9d70f" name="acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.1.41</p> + <p>GENE_ASSOCIATION: buc_BU092</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b6cb54d2-a123-4abc-8f3b-fe0b3ca9d70f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU092"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00173" stoichiometry="1"/> + <speciesReference constant="true" species="C01209" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00685" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00229" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R12691" metaid="_4d601935-f394-4d24-b7cc-75d1719185d8" name="R12691" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU269</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU269"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C22159" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C02972" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02767" metaid="_5ed74d1e-56f1-471e-a76b-98cc6e32df36" name="(3R)-3-hydroxyacyl-[acyl-carrier-protein]:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.100</p> + <p>GENE_ASSOCIATION: buc_BU351</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ed74d1e-56f1-471e-a76b-98cc6e32df36"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU351"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01271" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00685" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02649" metaid="cb0c6089-a7bd-4797-935f-415d39196e2d" name="ATP:N-acetyl-L-glutamate 5-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Arginine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.2.8</p> + <p>GENE_ASSOCIATION: buc_BU049</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cb0c6089-a7bd-4797-935f-415d39196e2d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.2.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU049"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00624" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C04133" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R10146" metaid="_59ff58c2-4b1b-470f-bb81-b2822ebb6f96" name="R10146" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: ( buc_BU427 ) OR ( buc_BU428 )</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU427"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU428"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00080" stoichiometry="3"/> + <speciesReference constant="true" species="C00004" stoichiometry="3"/> + <speciesReference constant="true" species="C00094" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00001" stoichiometry="3"/> + <speciesReference constant="true" species="C00003" stoichiometry="3"/> + <speciesReference constant="true" species="C00283" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01561" metaid="_96380344-3bbc-4a51-9ac5-c7f61cb390f9" name="adenosine:phosphate alpha-D-ribosyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.4.2.1</p> + <p>GENE_ASSOCIATION: buc_BU541</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_96380344-3bbc-4a51-9ac5-c7f61cb390f9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU541"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00212" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00620" stoichiometry="1"/> + <speciesReference constant="true" species="C00147" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00230" metaid="_4319e2ee-a8da-46e1-8f57-069851d769d7" name="acetyl-CoA:phosphate acetyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Pyruvate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Taurine and hypotaurine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Methane metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.1.8</p> + <p>GENE_ASSOCIATION: buc_BU176</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4319e2ee-a8da-46e1-8f57-069851d769d7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU176"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00024" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00227" stoichiometry="1"/> + <speciesReference constant="true" species="C00010" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R10147" metaid="e2cf822b-c57a-4db9-8827-e5638cfaf218" name="L-aspartate-4-semialdehyde hydro-lyase [adding pyruvate and cyclizing (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate-forming]" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Lysine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Monobactam biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.3.3.7</p> + <p>GENE_ASSOCIATION: buc_BU096</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e2cf822b-c57a-4db9-8827-e5638cfaf218"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.3.3.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU096"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00441" stoichiometry="1"/> + <speciesReference constant="true" species="C00022" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C20258" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04951" metaid="_848cca1f-6910-4688-a4d3-a15608f18f47" name="R04951" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glutathione metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.4.11.1</p> + <p>GENE_ASSOCIATION: buc_BU367</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_848cca1f-6910-4688-a4d3-a15608f18f47"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.11.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU367"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C05729" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05726" stoichiometry="1"/> + <speciesReference constant="true" species="C00037" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00332" metaid="_2c27d46b-3668-4992-bcf5-da71790f6180" name="ATP:GMP phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.4.8</p> + <p>GENE_ASSOCIATION: buc_BU434</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2c27d46b-3668-4992-bcf5-da71790f6180"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU434"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00144" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00035" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00212" metaid="_57028170-b75b-4d23-8846-979259107672" name="Acetyl-CoA:formate C-acetyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: ( buc_BU205 ) OR ( buc_BU206 ) OR ( buc_BU207 )</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU206"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU207"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU205"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00024" stoichiometry="1"/> + <speciesReference constant="true" species="C00058" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00022" stoichiometry="1"/> + <speciesReference constant="true" species="C00010" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00333" metaid="a1e1a992-5387-4263-a2d8-0a1e925df656" name="nucleoside-triphosphate:AMP phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU484</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU484"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00201" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00454" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00575" metaid="_38953f21-9f91-419a-a3e3-2333e0c63d3e" name="HCO3-:L-glutamine amido-ligase (ADP-forming, carbamate-phosphorylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pyrimidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Alanine, aspartate and glutamate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.5.5</p> + <p>GENE_ASSOCIATION: ( buc_BU144 ) OR ( buc_BU145 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_38953f21-9f91-419a-a3e3-2333e0c63d3e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.5.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU144"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU145"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00064" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00288" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + <speciesReference constant="true" species="C00169" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="2"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01547" metaid="_35959575-86e5-444a-bc18-029a99d66a96" name="ATP:dAMP phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.4.3</p> + <p>GENE_ASSOCIATION: buc_BU484</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_35959575-86e5-444a-bc18-029a99d66a96"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU484"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00360" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00206" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01669" metaid="_7e49e710-7409-43a5-ba76-99bcd0d7c8bc" name="5,10-methylenetetrahydrofolate:deoxycytidylate 5-hydroxymethyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU289</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU289"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00239" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00143" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00101" stoichiometry="1"/> + <speciesReference constant="true" species="C03997" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03968" metaid="_6aec24f1-d911-4aad-84dc-2b806a796319" name="2-Isopropylmalate hydro-lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Valine, leucine and isoleucine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.2.1.33</p> + <p>GENE_ASSOCIATION: ( buc_BUpL06 ) OR ( buc_BUpL07 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6aec24f1-d911-4aad-84dc-2b806a796319"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.33"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BUpL06"/> + <fbc:geneProductRef fbc:geneProduct="buc_BUpL07"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C02504" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C02631" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01858" metaid="b3dea714-a468-4e20-93b3-52ed2214d53e" name="dGTP:pyruvate 2-O-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.1.40</p> + <p>GENE_ASSOCIATION: buc_BU319</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b3dea714-a468-4e20-93b3-52ed2214d53e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.40"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU319"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00286" stoichiometry="1"/> + <speciesReference constant="true" species="C00022" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00074" stoichiometry="1"/> + <speciesReference constant="true" species="C00361" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00529" metaid="_7742a71e-96a8-4de6-a4e7-0ac83f07d2ee" name="ATP:sulfate adenylyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Sulfur metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Monobactam biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.7.4</p> + <p>GENE_ASSOCIATION: ( buc_BU423 ) OR ( buc_BU424 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7742a71e-96a8-4de6-a4e7-0ac83f07d2ee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU423"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU424"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00059" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00224" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00761" metaid="_9d1fd446-aa3a-446c-bd1f-9a862799dc91" name="D-fructose-6-phosphate D-erythrose-4-phosphate-lyase (adding phosphate acetyl-phosphate-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU094</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU094"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00085" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00227" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00279" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00762" metaid="e335aae7-304b-4dd0-8145-8de060dfb6c4" name="D-Fructose-1,6-bisphosphate 1-phosphohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU305</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU305"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00354" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00085" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02821" metaid="bbe8ce3f-c48e-47fa-9a52-54f87c598143" name="Trimethylaminoacetate:L-homosysteine S-methyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU030</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00719" stoichiometry="1"/> + <speciesReference constant="true" species="C00155" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00073" stoichiometry="1"/> + <speciesReference constant="true" species="C01026" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02704" metaid="_51a066ee-1339-4046-9d86-7392f1a4115d" name="protein-N(pi)-phosphohistidine:mannitol 1-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fructose and mannose metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.1.197</p> + <p>GENE_ASSOCIATION: buc_BU572</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_51a066ee-1339-4046-9d86-7392f1a4115d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.197"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU572"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04261" stoichiometry="1"/> + <speciesReference constant="true" species="C00392" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00615" stoichiometry="1"/> + <speciesReference constant="true" species="C00644" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01736" metaid="_312115e6-4cfc-4997-ae02-325eacdea938" name="(R)-S-Lactoylglutathione hydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Pyruvate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.1.2.6</p> + <p>GENE_ASSOCIATION: buc_BU246</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_312115e6-4cfc-4997-ae02-325eacdea938"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.2.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU246"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C03451" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00051" stoichiometry="1"/> + <speciesReference constant="true" species="C00256" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00768" metaid="_98c8ff73-464b-46a7-8698-de218847db72" name="L-glutamine:D-fructose-6-phosphate isomerase (deaminating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Amino sugar and nucleotide sugar metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Alanine, aspartate and glutamate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of nucleotide sugars - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.6.1.16</p> + <p>GENE_ASSOCIATION: buc_BU026</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_98c8ff73-464b-46a7-8698-de218847db72"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU026"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00064" stoichiometry="1"/> + <speciesReference constant="true" species="C00085" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + <speciesReference constant="true" species="C00352" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02703" metaid="_9ac6f2be-6d36-4395-939e-4277cb11d97c" name="D-Mannitol-1-phosphate:NAD+ 5-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fructose and mannose metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.17</p> + <p>GENE_ASSOCIATION: buc_BU571</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9ac6f2be-6d36-4395-939e-4277cb11d97c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU571"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00644" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05345" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01857" metaid="a72ac4bb-0fdb-4748-bac3-f918b54be6c7" name="ATP:dGDP phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU319</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU319"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00361" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00286" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R07168" metaid="_1c565225-c390-4dbf-a8c1-f824ea66622c" name="5-methyltetrahydrofolate:NAD+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || One carbon pool by folate - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.5.1.54</p> + <p>GENE_ASSOCIATION: buc_BU046</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1c565225-c390-4dbf-a8c1-f824ea66622c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.54"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU046"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00440" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00143" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R09107" metaid="ef79363c-2de5-4e91-93ba-e8046371ca3c" name="N-acetyl-L-citrulline amidohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Arginine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.5.1.16</p> + <p>GENE_ASSOCIATION: buc_BU047</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ef79363c-2de5-4e91-93ba-e8046371ca3c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU047"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C15532" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00033" stoichiometry="1"/> + <speciesReference constant="true" species="C00327" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00771" metaid="d03a53fe-4c04-485f-aa63-b016ac6d9c81" name="D-glucose-6-phosphate aldose-ketose-isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Starch and sucrose metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 5.3.1.9</p> + <p>GENE_ASSOCIATION: buc_BU573</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d03a53fe-4c04-485f-aa63-b016ac6d9c81"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU573"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00092" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00085" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00650" metaid="_716a0710-2600-4356-9019-6ca2c4c1cb19" name="S-Adenosyl-L-methionine:L-homocysteine S-methyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU030</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00019" stoichiometry="1"/> + <speciesReference constant="true" species="C00155" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00021" stoichiometry="1"/> + <speciesReference constant="true" species="C00073" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R07281" metaid="_7857b3e6-65d9-446f-affb-5a6b7c292ff7" name="D-ribulose 5-phosphate formate-lyase (L-3,4-dihydroxybutan-2-one 4-phosphate-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Riboflavin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.1.99.12</p> + <p>GENE_ASSOCIATION: buc_BU059</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7857b3e6-65d9-446f-affb-5a6b7c292ff7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.99.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU059"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00199" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C15556" stoichiometry="1"/> + <speciesReference constant="true" species="C00058" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01969" metaid="_86a57f69-628c-4d02-8bb0-6b2221c2b1ec" name="Deoxyguanosine:orthophosphate ribosyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.4.2.1</p> + <p>GENE_ASSOCIATION: buc_BU541</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_86a57f69-628c-4d02-8bb0-6b2221c2b1ec"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU541"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00330" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00672" stoichiometry="1"/> + <speciesReference constant="true" species="C00242" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00994" metaid="_94c4f90f-911f-4d39-9874-5ecbf3b59a28" name="(2R,3S)-3-methylmalate:NAD+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: C5-Branched dibasic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Valine, leucine and isoleucine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.85</p> + <p>GENE_ASSOCIATION: buc_BUpL05</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_94c4f90f-911f-4d39-9874-5ecbf3b59a28"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.85"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BUpL05"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00109" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C06032" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00756" metaid="_59c42c08-3b73-4cb6-997e-cc563aa99249" name="ATP:D-fructose-6-phosphate 1-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Methane metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.1.11</p> + <p>GENE_ASSOCIATION: buc_BU305</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_59c42c08-3b73-4cb6-997e-cc563aa99249"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU305"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00085" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00354" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01724" metaid="bd0acf5a-7917-45d7-9865-ec8210d87f69" name="5-phospho-alpha-D-ribose 1-diphosphate:nicotinate ligase (ADP, diphosphate-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nicotinate and nicotinamide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.4.21</p> + <p>GENE_ASSOCIATION: buc_BU361</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bd0acf5a-7917-45d7-9865-ec8210d87f69"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.4.21"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU361"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C01185" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00119" stoichiometry="1"/> + <speciesReference constant="true" species="C00253" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R07279" metaid="f8d26638-c44c-4fe5-a02b-0dd5e1ebc61f" name="ATP:1D-myo-inositol 3-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU285</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU285"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00137" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C04006" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R11765" metaid="_72629d05-49d0-45a0-85b5-7d1f9a0aebd7" name="tetrahydrobiopterin:NADP+ oxidoreductase (7,8-dihydrobiopterin-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Folate biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.5.1.3</p> + <p>GENE_ASSOCIATION: buc_BU143</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_72629d05-49d0-45a0-85b5-7d1f9a0aebd7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU143"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00272" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C02953" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R12852" metaid="_790e8412-0845-4d88-b095-f31ec00cbd63" name="guanylate kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.4.8</p> + <p>GENE_ASSOCIATION: buc_BU434</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_790e8412-0845-4d88-b095-f31ec00cbd63"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU434"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C22441" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C22442" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R12851" metaid="f35a6086-9823-4432-8a6b-e65381a4ae04" name="adenylosuccinate lyase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.3.2.2</p> + <p>GENE_ASSOCIATION: buc_BU263</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f35a6086-9823-4432-8a6b-e65381a4ae04"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.3.2.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU263"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C22395" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C22441" stoichiometry="1"/> + <speciesReference constant="true" species="C00122" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R07390" metaid="_8b12a7b0-579d-4b71-96a6-ba84ee36e742" name="R07390" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU273</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU273"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00344" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00116" stoichiometry="1"/> + <speciesReference constant="true" species="C05980" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R07274" metaid="ce068998-409d-4322-8579-aa766ef52d1b" name="O-phospho-L-serine:hydrogen-sulfide 2-amino-2-carboxyethyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Cysteine and methionine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.5.1.47</p> + <p>GENE_ASSOCIATION: buc_BU066</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ce068998-409d-4322-8579-aa766ef52d1b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.47"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU066"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01005" stoichiometry="1"/> + <speciesReference constant="true" species="C00283" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00097" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00549" metaid="_158255ca-8921-4a32-8939-b0b265bc3029" name="ATP:riboflavin 5'-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Riboflavin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.1.26</p> + <p>GENE_ASSOCIATION: buc_BU150</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_158255ca-8921-4a32-8939-b0b265bc3029"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.26"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU150"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00255" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00061" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01518" metaid="_75f38789-89a7-4d14-b28c-99c4d7beb751" name="D-phosphoglycerate 2,3-phosphomutase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycolysis / Gluconeogenesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Methane metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycine, serine and threonine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 5.4.2.11</p> + <p>GENE_ASSOCIATION: buc_BU304</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_75f38789-89a7-4d14-b28c-99c4d7beb751"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.2.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU304"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00631" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00197" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01993" metaid="d658015b-71d0-4849-923a-836613c07778" name="(S)-dihydroorotate amidohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pyrimidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.5.2.3</p> + <p>GENE_ASSOCIATION: buc_BU334</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d658015b-71d0-4849-923a-836613c07778"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.2.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU334"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00337" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00438" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02722" metaid="b90ec3ed-ce74-4ec3-b934-b933e16a9dc3" name="L-serine hydro-lyase [adding 1-C-(indol-3-yl)glycerol 3-phosphate L-tryptophan and glyceraldehyde-3-phosphate-forming]" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycine, serine and threonine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.2.1.20</p> + <p>GENE_ASSOCIATION: ( buc_BU277 ) OR ( buc_BU278 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b90ec3ed-ce74-4ec3-b934-b933e16a9dc3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU277"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU278"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00065" stoichiometry="1"/> + <speciesReference constant="true" species="C03506" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00118" stoichiometry="1"/> + <speciesReference constant="true" species="C00078" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01512" metaid="cd5a7596-ddc4-4d6c-ae67-b914fdc28cd9" name="ATP:3-phospho-D-glycerate 1-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycolysis / Gluconeogenesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.2.3</p> + <p>GENE_ASSOCIATION: buc_BU450</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cd5a7596-ddc4-4d6c-ae67-b914fdc28cd9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.2.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU450"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00197" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00236" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00425" metaid="ffbb0039-d3c0-4b5c-8792-5a5d543f379a" name="GTP 7,8-8,9-dihydrolase (diphosphate-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Riboflavin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Folate biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.5.4.25</p> + <p>GENE_ASSOCIATION: buc_BU271</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ffbb0039-d3c0-4b5c-8792-5a5d543f379a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU271"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="4"/> + <speciesReference constant="true" species="C00044" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00009" stoichiometry="2"/> + <speciesReference constant="true" species="C01304" stoichiometry="1"/> + <speciesReference constant="true" species="C00058" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03815" metaid="_9b8cfb9e-7688-4ae5-8c15-2796fc0753da" name="dihydrolipoylprotein:NAD+ oxidoreductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Glycine, serine and threonine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.8.1.4</p> + <p>GENE_ASSOCIATION: buc_BU207</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9b8cfb9e-7688-4ae5-8c15-2796fc0753da"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU207"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C02972" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C02051" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00669" metaid="_6c1c62a8-2f95-4e5b-8caf-598a5bee4e25" name="N2-Acetyl-L-ornithine amidohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Arginine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.5.1.16</p> + <p>GENE_ASSOCIATION: buc_BU047</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6c1c62a8-2f95-4e5b-8caf-598a5bee4e25"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU047"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00437" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00077" stoichiometry="1"/> + <speciesReference constant="true" species="C00033" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00548" metaid="_43a81f51-53be-46b5-b478-2da49696439e" name="riboflavin-5-phosphate phosphohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU150</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU150"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00061" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00255" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R12885" metaid="_324ec9ef-e6b0-4478-965c-d4650033e102" name="R12885" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Biosynthesis of various plant secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.25</p> + <p>GENE_ASSOCIATION: buc_BU493</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_324ec9ef-e6b0-4478-965c-d4650033e102"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU493"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C02637" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C22438" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R10221" metaid="_6176c6f8-5991-4125-b8f1-8805f031111c" name="6-phospho-D-gluconate:NAD+ 2-oxidoreductase (decarboxylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pentose phosphate pathway - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.343</p> + <p>GENE_ASSOCIATION: buc_BU107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6176c6f8-5991-4125-b8f1-8805f031111c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.343"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU107"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00345" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00199" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00550" metaid="_1ff95437-267a-4081-b60d-e6180cbf66e8" name="D-Glucose-1-phosphate:riboflavin 5'-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU150</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU150"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00255" stoichiometry="1"/> + <speciesReference constant="true" species="C00103" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00031" stoichiometry="1"/> + <speciesReference constant="true" species="C00061" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R09365" metaid="_081259d3-041d-4e25-8c3d-4c8d6d1e27d5" name="5-methyltetrahydropteroyltri-L-glutamate:L-selenohomocysteine Se-methyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Selenocompound metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.1.1.14</p> + <p>GENE_ASSOCIATION: buc_BU030</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_081259d3-041d-4e25-8c3d-4c8d6d1e27d5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05698" stoichiometry="1"/> + <speciesReference constant="true" species="C04489" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C04144" stoichiometry="1"/> + <speciesReference constant="true" species="C05335" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R11319" metaid="_313dbbc1-0741-43a3-9374-3ab01500e49e" name="ADP:thiamin-diphosphate phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Thiamine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.4.3</p> + <p>GENE_ASSOCIATION: buc_BU484</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_313dbbc1-0741-43a3-9374-3ab01500e49e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU484"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00068" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C03028" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01869" metaid="_53210686-0cd1-46c6-9224-b280cf66c119" name="(S)-dihydroorotate:NAD+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU362</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU362"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00337" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00295" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00530" metaid="_259e875d-b239-4241-85ec-3d55e72d6fe1" name="ADP:sulfate adenylyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: ( buc_BU423 ) OR ( buc_BU424 )</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU423"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU424"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00059" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00224" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R11671" metaid="c31cd4e2-ca76-4aec-82b2-3e9302d82ca7" name="R11671" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: ( buc_BU265 ) OR ( buc_BU351 )</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU265"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU351"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00024" stoichiometry="1"/> + <speciesReference constant="true" species="C00083" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05223" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00894" metaid="cdd13cb4-6176-47e5-9acd-8cef91a634a3" name="L-glutamate:L-cysteine gamma-ligase (ADP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glutathione metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.2.2</p> + <p>GENE_ASSOCIATION: buc_BU407</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cdd13cb4-6176-47e5-9acd-8cef91a634a3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU407"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + <speciesReference constant="true" species="C00097" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00669" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00531" metaid="c4b1545f-7821-4930-8e01-2883c64658b0" name="Adenylylsulfate sulfohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: ( buc_BU423 ) OR ( buc_BU424 )</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU423"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU424"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00224" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00059" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01863" metaid="_86c9eed2-24ad-4558-9f54-2789fd52335f" name="inosine:phosphate alpha-D-ribosyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.4.2.1</p> + <p>GENE_ASSOCIATION: buc_BU541</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_86c9eed2-24ad-4558-9f54-2789fd52335f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU541"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00294" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00262" stoichiometry="1"/> + <speciesReference constant="true" species="C00620" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00897" metaid="b542de60-0253-4048-9c5e-0b80efbef331" name="O3-acetyl-L-serine:hydrogen-sulfide 2-amino-2-carboxyethyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Sulfur metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Cysteine and methionine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.5.1.47</p> + <p>GENE_ASSOCIATION: buc_BU066</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b542de60-0253-4048-9c5e-0b80efbef331"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.47"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU066"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00979" stoichiometry="1"/> + <speciesReference constant="true" species="C00283" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00033" stoichiometry="1"/> + <speciesReference constant="true" species="C00097" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01867" metaid="_4c3562f0-7717-4262-b50f-06dff87aecc6" name="(S)-dihydroorotate:fumarate oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU362</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU362"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00337" stoichiometry="1"/> + <speciesReference constant="true" species="C00122" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00042" stoichiometry="1"/> + <speciesReference constant="true" species="C00295" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00899" metaid="_8453430d-e841-44cf-85d3-7925d6dddd38" name="L-cysteinylglycine dipeptidase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glutathione metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.4.11.1</p> + <p>GENE_ASSOCIATION: buc_BU367</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8453430d-e841-44cf-85d3-7925d6dddd38"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.4.11.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU367"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01419" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00097" stoichiometry="1"/> + <speciesReference constant="true" species="C00037" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01625" metaid="_9b11eb20-102c-455d-8da3-5a20ce8699ba" name="CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Pantothenate and CoA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.8.7</p> + <p>GENE_ASSOCIATION: buc_BU256</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9b11eb20-102c-455d-8da3-5a20ce8699ba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU256"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00010" stoichiometry="1"/> + <speciesReference constant="true" species="C03688" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00229" stoichiometry="1"/> + <speciesReference constant="true" species="C00054" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00658" metaid="_47fb88ea-a359-4ecb-8d92-6a4c82f10cf6" name="2-phospho-D-glycerate hydro-lyase (phosphoenolpyruvate-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycolysis / Gluconeogenesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Methane metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.2.1.11</p> + <p>GENE_ASSOCIATION: buc_BU417</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_47fb88ea-a359-4ecb-8d92-6a4c82f10cf6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU417"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00631" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00074" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01868" metaid="be64ed6f-3bef-4f40-82f9-41226d1a7c90" name="(S)-dihydroorotate:quinone oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pyrimidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.5.2</p> + <p>GENE_ASSOCIATION: buc_BU362</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#be64ed6f-3bef-4f40-82f9-41226d1a7c90"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.5.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU362"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00337" stoichiometry="1"/> + <speciesReference constant="true" species="C15602" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C15603" stoichiometry="1"/> + <speciesReference constant="true" species="C00295" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00416" metaid="e7c91da0-e461-4b45-b6c5-7ca43c5764d2" name="UTP:N-acetyl-alpha-D-glucosamine-1-phosphate uridylyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Amino sugar and nucleotide sugar metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of nucleotide sugars - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.7.23</p> + <p>GENE_ASSOCIATION: buc_BU027</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e7c91da0-e461-4b45-b6c5-7ca43c5764d2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU027"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00075" stoichiometry="1"/> + <speciesReference constant="true" species="C04501" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00043" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R10699" metaid="f5071ec6-3e0e-44e5-b5c8-8e3a515242e4" name="L-lysine:8-amino-7-oxononanoate aminotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU292</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU292"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00047" stoichiometry="1"/> + <speciesReference constant="true" species="C01092" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C01037" stoichiometry="1"/> + <speciesReference constant="true" species="C04076" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01870" metaid="bd305f8f-a15b-4a86-8071-f488f7fdb28e" name="Orotidine-5'-phosphate:diphosphate phospho-alpha-D-ribosyl-transferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pyrimidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.4.2.10</p> + <p>GENE_ASSOCIATION: buc_BU559</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bd305f8f-a15b-4a86-8071-f488f7fdb28e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU559"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01103" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00119" stoichiometry="1"/> + <speciesReference constant="true" species="C00295" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00660" metaid="_5709297b-acec-4f89-8673-cfb4c8cdb15e" name="Phosphoenolpyruvate:UDP-N-acetyl-D-glucosamine 1-carboxyvinyl-transferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Amino sugar and nucleotide sugar metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Peptidoglycan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of nucleotide sugars - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.5.1.7</p> + <p>GENE_ASSOCIATION: buc_BU386</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5709297b-acec-4f89-8673-cfb4c8cdb15e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU386"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00074" stoichiometry="1"/> + <speciesReference constant="true" species="C00043" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C04631" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01135" metaid="_559ed3c0-4be9-44e9-8afe-d292943d732c" name="IMP:L-aspartate ligase (GDP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Alanine, aspartate and glutamate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.4.4</p> + <p>GENE_ASSOCIATION: buc_BU566</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_559ed3c0-4be9-44e9-8afe-d292943d732c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.4.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU566"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00049" stoichiometry="1"/> + <speciesReference constant="true" species="C00044" stoichiometry="1"/> + <speciesReference constant="true" species="C00130" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00035" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C03794" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01015" metaid="_85325534-4889-439b-a18a-6787c0395e18" name="D-glyceraldehyde-3-phosphate aldose-ketose-isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Inositol phosphate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycolysis / Gluconeogenesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fructose and mannose metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 5.3.1.1</p> + <p>GENE_ASSOCIATION: buc_BU307</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_85325534-4889-439b-a18a-6787c0395e18"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU307"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00118" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00111" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04405" metaid="_7692e259-a4fc-4317-b850-405c8d1cadbe" name="5-Methyltetrahydropteroyltri-L-glutamate:L-homocysteine S-methyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Cysteine and methionine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.1.1.14</p> + <p>GENE_ASSOCIATION: buc_BU030</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7692e259-a4fc-4317-b850-405c8d1cadbe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00155" stoichiometry="1"/> + <speciesReference constant="true" species="C04489" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C04144" stoichiometry="1"/> + <speciesReference constant="true" species="C00073" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03316" metaid="ab4c5ea2-0bcf-47c9-b3b3-46cc8cbff1e5" name="R03316" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Citrate cycle (TCA cycle) - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.2.4.2</p> + <p>GENE_ASSOCIATION: buc_BU302</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ab4c5ea2-0bcf-47c9-b3b3-46cc8cbff1e5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.4.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU302"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C15972" stoichiometry="1"/> + <speciesReference constant="true" species="C05381" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C16254" stoichiometry="1"/> + <speciesReference constant="true" species="C00068" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01137" metaid="f442447f-e227-4bf1-9307-99e40ba5a7db" name="ATP:dADP phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU319</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU319"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00206" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00131" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01138" metaid="_7297bdae-bdc1-4b09-804e-3df3e36195fb" name="dATP:pyruvate 2-O-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.1.40</p> + <p>GENE_ASSOCIATION: buc_BU319</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7297bdae-bdc1-4b09-804e-3df3e36195fb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.40"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU319"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00022" stoichiometry="1"/> + <speciesReference constant="true" species="C00131" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00206" stoichiometry="1"/> + <speciesReference constant="true" species="C00074" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R11062" metaid="fda4dff2-484d-4d2e-99c5-92efd7151cb8" name="phosphatidylethanolamine:phosphatidylglycerol 3-phosphatidyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU273</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU273"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00350" stoichiometry="1"/> + <speciesReference constant="true" species="C00344" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05980" stoichiometry="1"/> + <speciesReference constant="true" species="C00189" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03321" metaid="_073b7c58-91c7-49af-a781-a2d5c4036870" name="beta-D-Glucose 6-phosphate ketol-isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycolysis / Gluconeogenesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 5.3.1.9</p> + <p>GENE_ASSOCIATION: buc_BU573</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_073b7c58-91c7-49af-a781-a2d5c4036870"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU573"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01172" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05345" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02474" metaid="_22ef0dab-f71d-420a-a62f-be20d9d1f611" name="Pantothenate amidohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU196</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU196"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00864" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00099" stoichiometry="1"/> + <speciesReference constant="true" species="C00522" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02473" metaid="aaf95929-0ec4-4f22-b3ad-7d8c65022023" name="(R)-Pantoate:beta-alanine ligase (AMP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Pantothenate and CoA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.2.1</p> + <p>GENE_ASSOCIATION: buc_BU196</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#aaf95929-0ec4-4f22-b3ad-7d8c65022023"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU196"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00099" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00522" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00864" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04533" metaid="_8f4bdeb8-04db-4cdd-b01b-4dcff686bd87" name="(3R)-3-hydroxybutanoyl-[acyl-carrier protein]:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.100</p> + <p>GENE_ASSOCIATION: buc_BU351</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8f4bdeb8-04db-4cdd-b01b-4dcff686bd87"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU351"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04618" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C05744" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00177" metaid="_6638368a-2b26-413b-b3b7-52b89f43f3d1" name="ATP:L-methionine S-adenosyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum) || Cysteine and methionine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of various plant secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.5.1.6</p> + <p>GENE_ASSOCIATION: buc_BU408</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6638368a-2b26-413b-b3b7-52b89f43f3d1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU408"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00019" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00073" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03443" metaid="bddf0974-3834-4ad9-9f75-3f0d1f1b9057" name="N-acetyl-L-glutamate-5-semialdehyde:NADP+ 5-oxidoreductase (phosphrylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Arginine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.2.1.38</p> + <p>GENE_ASSOCIATION: buc_BU048</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bddf0974-3834-4ad9-9f75-3f0d1f1b9057"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.38"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU048"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C01250" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C04133" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04773" metaid="dd848ad2-bf85-4256-847b-c22d61d127ae" name="Selenomethionine:tRNAMet ligase (AMP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Selenocompound metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.10</p> + <p>GENE_ASSOCIATION: buc_BU109</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dd848ad2-bf85-4256-847b-c22d61d127ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU109"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05335" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C01647" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + <speciesReference constant="true" species="C05336" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01245" metaid="a24830a5-1ca2-4e7a-b22f-d40d4b806ee7" name="adenosine ribohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU541</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU541"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00212" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00121" stoichiometry="1"/> + <speciesReference constant="true" species="C00147" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03665" metaid="d0da7cb7-6e15-41e8-9138-b551c2ef7586" name="L-Valine:tRNAVal ligase (AMP-forming)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.9</p> + <p>GENE_ASSOCIATION: buc_BU366</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d0da7cb7-6e15-41e8-9138-b551c2ef7586"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU366"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00183" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C01653" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C02554" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00158" metaid="_61c28cfd-193a-4c59-bd16-732a3d399ac1" name="ATP:UMP phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pyrimidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.4.22</p> + <p>GENE_ASSOCIATION: buc_BU233</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_61c28cfd-193a-4c59-bd16-732a3d399ac1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.22"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU233"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00105" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00015" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01127" metaid="_49e56453-3517-42b9-88f8-a5736d5140f0" name="IMP 1,2-hydrolase (decyclizing)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.5.4.10</p> + <p>GENE_ASSOCIATION: buc_BU031</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49e56453-3517-42b9-88f8-a5736d5140f0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU031"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00130" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C04734" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00160" metaid="_8e97b5e9-0f7c-4993-871b-6163c26c7f93" name="FAD nucleotidohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU150</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU150"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00016" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + <speciesReference constant="true" species="C00061" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00161" metaid="_26ced404-6ce6-473f-a5f7-ddfa5511b196" name="ATP:FMN adenylyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Riboflavin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.7.2</p> + <p>GENE_ASSOCIATION: buc_BU150</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_26ced404-6ce6-473f-a5f7-ddfa5511b196"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU150"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00061" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00016" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02340" metaid="f58725b3-482d-47dc-9bc2-d9bcd7ed7b96" name="(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate D-glyceraldehyde-3-phosphate-lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.2.1.20</p> + <p>GENE_ASSOCIATION: buc_BU277</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f58725b3-482d-47dc-9bc2-d9bcd7ed7b96"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU277"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C03506" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00118" stoichiometry="1"/> + <speciesReference constant="true" species="C00463" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02100" metaid="_5352f7b7-ae70-415d-8102-8012129bbedf" name="dUTP nucleotidohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pyrimidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.6.1.23</p> + <p>GENE_ASSOCIATION: buc_BU560</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5352f7b7-ae70-415d-8102-8012129bbedf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU560"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00460" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00365" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01373" metaid="_70ac2ae9-fc6a-463c-9bc3-9ee3224ada5d" name="prephenate hydro-lyase (decarboxylating phenylpyruvate-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.2.1.51</p> + <p>GENE_ASSOCIATION: buc_BU392</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_70ac2ae9-fc6a-463c-9bc3-9ee3224ada5d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU392"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00254" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00166" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01132" metaid="d2407316-3ae0-4a6a-b954-ca31216072fe" name="IMP:diphosphate phospho-D-ribosyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.4.2.8</p> + <p>GENE_ASSOCIATION: buc_BU195</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d2407316-3ae0-4a6a-b954-ca31216072fe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU195"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00130" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00262" stoichiometry="1"/> + <speciesReference constant="true" species="C00119" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04640" metaid="_82bc6201-a831-4fba-bcae-db0298a8b97e" name="N-(5'-phospho-D-ribosylformimino)-5-amino-1- (5''-phospho-D-ribosyl)-4-imidazolecarboxamide ketol-isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Histidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 5.3.1.16</p> + <p>GENE_ASSOCIATION: buc_BU104</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_82bc6201-a831-4fba-bcae-db0298a8b97e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU104"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04896" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C04916" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01134" metaid="_2183f5f4-7e4e-4285-b8f4-ef6f770a03f0" name="inosine-5'-phosphate:NADP+ oxidoreductase (aminating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.7.1.7</p> + <p>GENE_ASSOCIATION: buc_BU204</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2183f5f4-7e4e-4285-b8f4-ef6f770a03f0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.7.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU204"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00130" stoichiometry="1"/> + <speciesReference constant="true" species="C00014" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C00144" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02101" metaid="_46cd2838-ac0a-4293-bf90-9861e9b13a3a" name="5,10-Methylenetetrahydrofolate:dUMP C-methyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || One carbon pool by folate - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pyrimidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.1.1.45</p> + <p>GENE_ASSOCIATION: buc_BU440</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_46cd2838-ac0a-4293-bf90-9861e9b13a3a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.45"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU440"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00365" stoichiometry="1"/> + <speciesReference constant="true" species="C00143" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00364" stoichiometry="1"/> + <speciesReference constant="true" species="C00415" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R09099" metaid="_7341b491-c29b-47cc-8dd0-d85d688be245" name="5,10-methylenetetrahydromethanopterin:glycine hydroxymethyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Methane metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.1.2.1</p> + <p>GENE_ASSOCIATION: buc_BU289</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7341b491-c29b-47cc-8dd0-d85d688be245"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU289"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01217" stoichiometry="1"/> + <speciesReference constant="true" species="C00065" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C04377" stoichiometry="1"/> + <speciesReference constant="true" species="C00037" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00189" metaid="aa174d72-b9dc-4d68-994b-22b8f515a63b" name="deamido-NAD+:ammonia ligase (AMP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nicotinate and nicotinamide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.1.5</p> + <p>GENE_ASSOCIATION: buc_BU174</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#aa174d72-b9dc-4d68-994b-22b8f515a63b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.1.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU174"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00014" stoichiometry="1"/> + <speciesReference constant="true" species="C00857" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05636" metaid="_8463aec3-81c7-4f64-825e-2c8120d22dd8" name="1-Deoxy-D-xylulose-5-phosphate pyruvate-lyase (carboxylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Thiamine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Terpenoid backbone biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.2.1.7</p> + <p>GENE_ASSOCIATION: buc_BU464</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8463aec3-81c7-4f64-825e-2c8120d22dd8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.2.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU464"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00022" stoichiometry="1"/> + <speciesReference constant="true" species="C00118" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C11437" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04426" metaid="_81314b0a-3a01-4309-9a68-3559157aee0a" name="(2R,3S)-3-isopropylmalate:NAD+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Valine, leucine and isoleucine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.85</p> + <p>GENE_ASSOCIATION: buc_BUpL05</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_81314b0a-3a01-4309-9a68-3559157aee0a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.85"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BUpL05"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04411" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C04236" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03457" metaid="fc0fce5a-5202-4db3-9366-bb05e1453118" name="D-erythro-1-(Imidazol-4-yl)glycerol 3-phosphate hydro-lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Histidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.2.1.19</p> + <p>GENE_ASSOCIATION: buc_BU102</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fc0fce5a-5202-4db3-9366-bb05e1453118"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU102"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04666" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C01267" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R06847" metaid="_94b6f387-6af6-4b83-ac03-e9cb3179a031" name="shikimate:NAD+ 3-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU493</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU493"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00493" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C02637" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05637" metaid="_7e162891-b3c7-4c2b-a9dd-268b02b27346" name="2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol CMP-lyase (cyclizing)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Terpenoid backbone biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.6.1.12</p> + <p>GENE_ASSOCIATION: buc_BU419</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7e162891-b3c7-4c2b-a9dd-268b02b27346"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.6.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU419"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C11436" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00055" stoichiometry="1"/> + <speciesReference constant="true" species="C11453" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01158" metaid="_0509c91d-6307-4e12-adf6-f9aeab24ddca" name="L-histidinol:NAD+ oxidoreductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.23</p> + <p>GENE_ASSOCIATION: buc_BU100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0509c91d-6307-4e12-adf6-f9aeab24ddca"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00860" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="2"/> + <speciesReference constant="true" species="C00004" stoichiometry="2"/> + <speciesReference constant="true" species="C00135" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03459" metaid="e2ed8741-7bc0-4385-bec8-b2c4407f15fa" name="2,5-Diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine 2-aminohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Riboflavin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.5.4.26</p> + <p>GENE_ASSOCIATION: buc_BU461</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e2ed8741-7bc0-4385-bec8-b2c4407f15fa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.26"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU461"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01304" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00014" stoichiometry="1"/> + <speciesReference constant="true" species="C01268" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05634" metaid="_80955609-7d00-4e8b-b3d0-7d8439e217c1" name="ATP:4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol 2-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Terpenoid backbone biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.1.148</p> + <p>GENE_ASSOCIATION: buc_BU170</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_80955609-7d00-4e8b-b3d0-7d8439e217c1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.148"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU170"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C11435" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C11436" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03458" metaid="c4743fae-de5c-4452-9fea-30b67b7dd860" name="5-amino-6-(5-phosphoribitylamino)uracil:NADP+ 1'-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Riboflavin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.193</p> + <p>GENE_ASSOCIATION: buc_BU462</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c4743fae-de5c-4452-9fea-30b67b7dd860"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.193"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU462"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04454" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C01268" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04429" metaid="_77560a46-efd5-4230-a0fe-ae4a49d80343" name="butyryl-[acp]:NAD+ trans-2-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.9</p> + <p>GENE_ASSOCIATION: buc_BU265</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_77560a46-efd5-4230-a0fe-ae4a49d80343"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU265"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + <speciesReference constant="true" species="C05745" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C04246" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03460" metaid="b66a8999-bd13-490c-8cb4-0d893421c114" name="phosphoenolpyruvate:3-phosphoshikimate 5-O-(1-carboxyvinyl)-transferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.5.1.19</p> + <p>GENE_ASSOCIATION: buc_BU311</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b66a8999-bd13-490c-8cb4-0d893421c114"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU311"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00074" stoichiometry="1"/> + <speciesReference constant="true" species="C03175" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C01269" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04430" metaid="_0a89a4b9-6a21-4e33-a348-c85cd07af00b" name="butyryl-[acp]:NADP+ trans-2-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.10</p> + <p>GENE_ASSOCIATION: buc_BU265</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0a89a4b9-6a21-4e33-a348-c85cd07af00b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU265"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + <speciesReference constant="true" species="C05745" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C04246" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00194" metaid="af8d133c-c2c4-4018-9aee-2bfa227d7ccc" name="S-Adenosyl-L-homocysteine homocysteinylribohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Cysteine and methionine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.2.2.9</p> + <p>GENE_ASSOCIATION: buc_BU210</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#af8d133c-c2c4-4018-9aee-2bfa227d7ccc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.2.2.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU210"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00021" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C03539" stoichiometry="1"/> + <speciesReference constant="true" species="C00147" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01163" metaid="bc4e8f37-0fa5-42d2-8a4c-df761ef11344" name="L-histidinal:NAD+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Histidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.23</p> + <p>GENE_ASSOCIATION: buc_BU100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bc4e8f37-0fa5-42d2-8a4c-df761ef11344"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01929" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00135" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R06975" metaid="ca94bf84-f898-42bb-90ea-458e8e3db118" name="formate:5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide ligase (ADP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU031</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU031"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00058" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C04677" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C04734" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R12049" metaid="_74e85786-44dd-48b6-8002-f2e7dff66c10" name="R12049" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU352</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU352"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00083" stoichiometry="2"/> + <speciesReference constant="true" species="C02247" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00010" stoichiometry="3"/> + <speciesReference constant="true" species="C00011" stoichiometry="3"/> + <speciesReference constant="true" species="C21873" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00199" metaid="f28d8825-5116-41e7-97b4-77f32150f60d" name="ATP:pyruvate,water phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU319</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU319"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00022" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00074" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05884" metaid="_8efd0e3a-aac4-45b6-bab6-a511885f9447" name="isopentenyl-diphosphate:ferredoxin oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Terpenoid backbone biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.17.7.4</p> + <p>GENE_ASSOCIATION: buc_BU147</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8efd0e3a-aac4-45b6-bab6-a511885f9447"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.7.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU147"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C11811" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="2"/> + <speciesReference constant="true" species="C00138" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00139" stoichiometry="2"/> + <speciesReference constant="true" species="C00129" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02236" metaid="_5adf20ce-abd9-40e2-8abd-4f315c1644f8" name="dihydrofolate:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || One carbon pool by folate - Buchnera aphidicola APS (Acyrthosiphon pisum) || Folate biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.5.1.3</p> + <p>GENE_ASSOCIATION: buc_BU143</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5adf20ce-abd9-40e2-8abd-4f315c1644f8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU143"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00415" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C00504" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00178" metaid="_41e1e82b-6bbc-40e8-b2b4-f7258f15201e" name="S-adenosyl-L-methionine carboxy-lyase [S-adenosyl 3-(methylsulfanyl)propylamine-forming]" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Arginine and proline metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Cysteine and methionine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.1.1.50</p> + <p>GENE_ASSOCIATION: buc_BU208</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_41e1e82b-6bbc-40e8-b2b4-f7258f15201e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.50"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU208"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00019" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C01137" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04536" metaid="e333412b-d506-472e-b7d9-12e97cc2d3cf" name="(3R)-3-hydroxyoctanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.100</p> + <p>GENE_ASSOCIATION: buc_BU351</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e333412b-d506-472e-b7d9-12e97cc2d3cf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU351"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04620" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05750" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02235" metaid="_573db7e2-10cc-4daa-83f4-0d90ca9f614a" name="dihydrofolate:NAD+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || One carbon pool by folate - Buchnera aphidicola APS (Acyrthosiphon pisum) || Folate biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.5.1.3</p> + <p>GENE_ASSOCIATION: buc_BU143</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_573db7e2-10cc-4daa-83f4-0d90ca9f614a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU143"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00415" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00504" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04779" metaid="_233cfb25-b558-40aa-9d00-97f80ff09398" name="ATP:D-fructose-6-phosphate 1-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycolysis / Gluconeogenesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fructose and mannose metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pentose phosphate pathway - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.1.11</p> + <p>GENE_ASSOCIATION: buc_BU305</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_233cfb25-b558-40aa-9d00-97f80ff09398"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU305"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05345" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05378" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04534" metaid="fb19aa5b-2577-4df4-9c1f-8ffd422e1fca" name="(3R)-3-hydroxydecanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.100</p> + <p>GENE_ASSOCIATION: buc_BU351</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fb19aa5b-2577-4df4-9c1f-8ffd422e1fca"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU351"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + <speciesReference constant="true" species="C04619" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05753" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02237" metaid="ce0f68ec-b6e2-4325-89bf-1933eab6af4c" name="7,8-dihydropteroate:L-glutamate ligase (ADP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Folate biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.2.12 / 6.3.2.17</p> + <p>GENE_ASSOCIATION: buc_BU167</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ce0f68ec-b6e2-4325-89bf-1933eab6af4c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.12 / 6.3.2.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU167"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + <speciesReference constant="true" species="C00921" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00415" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05629" metaid="_2b66a674-8669-4206-a427-01e2a758bad5" name="UDPMurAc(oyl-L-Ala-D-gamma-Glu-L-Lys-D-Ala-D-Ala):undecaprenyl-phosphate phospho-N-acetylmuramoyl-pentapeptide-transferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Peptidoglycan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.8.13</p> + <p>GENE_ASSOCIATION: buc_BU219</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2b66a674-8669-4206-a427-01e2a758bad5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU219"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C17556" stoichiometry="1"/> + <speciesReference constant="true" species="C04702" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00105" stoichiometry="1"/> + <speciesReference constant="true" species="C04851" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05627" metaid="_29de804f-e546-40df-8498-a7f6bb11f6b5" name="undecaprenyl-diphosphate phosphohydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Teichoic acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Peptidoglycan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.6.1.27</p> + <p>GENE_ASSOCIATION: buc_BU062</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_29de804f-e546-40df-8498-a7f6bb11f6b5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU062"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C04574" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C17556" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04780" metaid="bc1aaf90-4f80-4533-81c3-dd99c760bccf" name="beta-D-Fructose 1,6-bisphosphate 1-phosphohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU305</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU305"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05378" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05345" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01273" metaid="_0ed2f7ba-6193-4d78-b289-30ce610aaceb" name="N-ribosylnicotinamide ribohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU541</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU541"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C03150" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00121" stoichiometry="1"/> + <speciesReference constant="true" species="C00153" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04543" metaid="d2ad6bc7-1cb3-4824-94e9-44967ed44059" name="(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein]:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.100</p> + <p>GENE_ASSOCIATION: buc_BU351</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d2ad6bc7-1cb3-4824-94e9-44967ed44059"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU351"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04633" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C05762" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05633" metaid="_42789bf5-b17e-4c79-a21a-3531ea3bfc8c" name="CTP: 2-C-Methyl-D-erythritol 4-phosphate cytidylyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Terpenoid backbone biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.7.60</p> + <p>GENE_ASSOCIATION: buc_BU420</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_42789bf5-b17e-4c79-a21a-3531ea3bfc8c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.60"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU420"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00063" stoichiometry="1"/> + <speciesReference constant="true" species="C11434" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C11435" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00066" metaid="_14eeb8d6-6e59-4729-b6c0-53000a94c3f4" name="6,7-Dimethyl-8-(1-D-ribityl)lumazine:6,7-dimethyl-8-(1-D-ribityl)lumazine 2,3-butanediyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Riboflavin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.5.1.9</p> + <p>GENE_ASSOCIATION: buc_BU112</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_14eeb8d6-6e59-4729-b6c0-53000a94c3f4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU112"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04332" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00255" stoichiometry="1"/> + <speciesReference constant="true" species="C04732" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01397" metaid="b79b72e6-556a-4281-9faa-66ab9ae2d8ff" name="carbamoyl-phosphate:L-aspartate carbamoyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pyrimidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Alanine, aspartate and glutamate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.1.3.2</p> + <p>GENE_ASSOCIATION: ( buc_BU369 ) OR ( buc_BU370 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b79b72e6-556a-4281-9faa-66ab9ae2d8ff"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.3.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU370"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU369"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00169" stoichiometry="1"/> + <speciesReference constant="true" species="C00049" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00438" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02003" metaid="_7a222bc3-ac54-41c0-b540-35d1e859771c" name="Geranyl-diphosphate:isopentenyl-diphosphate geranyltrans-transferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Terpenoid backbone biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.5.1.10</p> + <p>GENE_ASSOCIATION: buc_BU465</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7a222bc3-ac54-41c0-b540-35d1e859771c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU465"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00129" stoichiometry="1"/> + <speciesReference constant="true" species="C00341" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00448" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05630" metaid="_37191053-21ae-448d-8635-a99329a0f96b" name="UDP-N-acetylmuramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine:undecaprenyl-phosphate phospho-N-acetylmuramoyl-pentapeptide-transferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Peptidoglycan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.8.13</p> + <p>GENE_ASSOCIATION: buc_BU219</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_37191053-21ae-448d-8635-a99329a0f96b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.8.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU219"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C17556" stoichiometry="1"/> + <speciesReference constant="true" species="C04882" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00105" stoichiometry="1"/> + <speciesReference constant="true" species="C05897" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01398" metaid="_6b11fc56-bd6a-411b-b707-62ee95334854" name="Carbamoyl-phosphate:L-ornithine carbamoyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Arginine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.1.3.3</p> + <p>GENE_ASSOCIATION: buc_BU368</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6b11fc56-bd6a-411b-b707-62ee95334854"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.3.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU368"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00077" stoichiometry="1"/> + <speciesReference constant="true" species="C00169" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00327" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01213" metaid="_04ea75c8-0e37-4bfb-9ac6-f99d6497f42e" name="acetyl-CoA:3-methyl-2-oxobutanoate C-acetyltransferase (thioester-hydrolysing, carboxymethyl-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Pyruvate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Valine, leucine and isoleucine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.3.13</p> + <p>GENE_ASSOCIATION: buc_BUpL04</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_04ea75c8-0e37-4bfb-9ac6-f99d6497f42e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.3.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BUpL04"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00010" stoichiometry="1"/> + <speciesReference constant="true" species="C02504" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00024" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00141" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04724" metaid="_89f6b855-9b5b-4982-b30e-2df52c20e312" name="dodecanoyl-[acp]:NAD+ trans-2-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.9</p> + <p>GENE_ASSOCIATION: buc_BU265</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_89f6b855-9b5b-4982-b30e-2df52c20e312"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU265"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + <speciesReference constant="true" species="C05223" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C05758" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04966" metaid="_810c4611-e437-453c-8f00-e22c7ca797fd" name="tetradecanoyl-[acp]:NAD+ trans-2-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.9</p> + <p>GENE_ASSOCIATION: buc_BU265</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_810c4611-e437-453c-8f00-e22c7ca797fd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU265"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + <speciesReference constant="true" species="C05761" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C05760" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00125" metaid="_9ba7400b-526d-495b-aa8d-7da9249e2c3f" name="P1,P4-bis(5'-adenosyl)-tetraphosphate nucleotidebisphosphohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.6.1.41</p> + <p>GENE_ASSOCIATION: buc_BU142</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9ba7400b-526d-495b-aa8d-7da9249e2c3f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU142"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01260" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02788" metaid="_0e75ba6f-39a3-4d54-9844-e161b0af3151" name="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:(L)-meso-2,6-diaminoheptanedioate gamma-ligase (ADP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Lysine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Peptidoglycan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.2.13</p> + <p>GENE_ASSOCIATION: buc_BU221</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0e75ba6f-39a3-4d54-9844-e161b0af3151"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU221"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00680" stoichiometry="1"/> + <speciesReference constant="true" species="C00692" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C04877" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04963" metaid="_1ef02294-fc7b-4e70-bb94-a863b768a972" name="Decanoyl-[acyl-carrier protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.1.41</p> + <p>GENE_ASSOCIATION: buc_BU092</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1ef02294-fc7b-4e70-bb94-a863b768a972"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU092"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01209" stoichiometry="1"/> + <speciesReference constant="true" species="C05755" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05756" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00229" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R10052" metaid="_79354782-52be-4480-aa18-b534037ae685" name="(2R,3S)-3-isopropylmalate:NAD+ oxidoreductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.85</p> + <p>GENE_ASSOCIATION: buc_BUpL05</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_79354782-52be-4480-aa18-b534037ae685"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.85"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BUpL05"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04411" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00233" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04964" metaid="_24408e48-be99-4913-b024-f70ef71dfebd" name="(3R)-3-hydroxydodecanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.100</p> + <p>GENE_ASSOCIATION: buc_BU351</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_24408e48-be99-4913-b024-f70ef71dfebd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU351"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05757" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05756" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00126" metaid="_4b484690-ecb5-4f3d-a096-e213402042ae" name="ADP:ATP adenylyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU142</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU142"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C01260" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00127" metaid="_5676af1e-8556-4af1-8a8b-46f26f5b919a" name="ATP:AMP phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.4.3</p> + <p>GENE_ASSOCIATION: buc_BU484</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5676af1e-8556-4af1-8a8b-46f26f5b919a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU484"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04969" metaid="eceb0fe9-8f76-4ddf-83de-69485e92c089" name="hexadecanoyl-[acp]:NAD+ trans-2-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.9</p> + <p>GENE_ASSOCIATION: buc_BU265</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eceb0fe9-8f76-4ddf-83de-69485e92c089"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU265"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05764" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C05763" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01217" metaid="_429205da-18cf-44e6-840c-0949c70d2171" name="5-methyltetrahydrofolate:ferredoxin oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU046</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU046"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00080" stoichiometry="2"/> + <speciesReference constant="true" species="C00143" stoichiometry="1"/> + <speciesReference constant="true" species="C00138" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00440" stoichiometry="1"/> + <speciesReference constant="true" species="C00139" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01218" metaid="f535a73e-03dc-44d3-82f3-4128e7af3d8b" name="5,10-methylenetetrahydrofolate:NAD+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU486</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU486"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00143" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00445" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04725" metaid="a1543c54-33b6-412b-9aeb-bc8d06ed71a1" name="dodecanoyl-[acp]:NADP+ trans-2-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.10</p> + <p>GENE_ASSOCIATION: buc_BU265</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a1543c54-33b6-412b-9aeb-bc8d06ed71a1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU265"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + <speciesReference constant="true" species="C05223" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C05758" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04967" metaid="cda2ca9d-3843-43cf-a642-1dd2ffde9fee" name="tetradecanoyl-[acp]:NADP+ trans-2-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.10</p> + <p>GENE_ASSOCIATION: buc_BU265</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cda2ca9d-3843-43cf-a642-1dd2ffde9fee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU265"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + <speciesReference constant="true" species="C05761" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C05760" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04726" metaid="_1e159ed2-9730-4fc1-929e-d07f88a4342b" name="dodecanoyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.1.41</p> + <p>GENE_ASSOCIATION: buc_BU092</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1e159ed2-9730-4fc1-929e-d07f88a4342b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU092"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01209" stoichiometry="1"/> + <speciesReference constant="true" species="C05223" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05759" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00229" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04968" metaid="_73789c9e-8611-472e-9af6-d09adb86cbc4" name="Tetradecanoyl-[acyl-carrier protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.1.41</p> + <p>GENE_ASSOCIATION: buc_BU092</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_73789c9e-8611-472e-9af6-d09adb86cbc4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU092"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01209" stoichiometry="1"/> + <speciesReference constant="true" species="C05761" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05762" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00229" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R10170" metaid="b01d5bf2-5ca1-44ae-a736-e57ce6b93e8d" name="(2R,3S)-3-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.2.1.33</p> + <p>GENE_ASSOCIATION: ( buc_BUpL06 ) OR ( buc_BUpL07 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b01d5bf2-5ca1-44ae-a736-e57ce6b93e8d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.33"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BUpL06"/> + <fbc:geneProductRef fbc:geneProduct="buc_BUpL07"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04411" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C02504" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00130" metaid="e3463609-034d-455a-8670-ed462d51e437" name="ATP:dephospho-CoA 3'-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Pantothenate and CoA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.1.24</p> + <p>GENE_ASSOCIATION: buc_BU203</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e3463609-034d-455a-8670-ed462d51e437"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.24"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU203"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00882" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00010" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01220" metaid="c985cea3-8d8b-4fc2-ad3f-0222f64c9a43" name="5,10-methylenetetrahydrofolate:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || One carbon pool by folate - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.5.1.5</p> + <p>GENE_ASSOCIATION: buc_BU486</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c985cea3-8d8b-4fc2-ad3f-0222f64c9a43"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU486"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00143" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00445" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01221" metaid="_8adeb06e-e55e-46a5-95f0-e83f2fd0bb24" name="glycine:NAD+ 2-oxidoreductase (tetrahydrofolate-methylene-adding)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Glyoxylate and dicarboxylate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU207</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU207"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + <speciesReference constant="true" species="C00101" stoichiometry="1"/> + <speciesReference constant="true" species="C00037" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00014" stoichiometry="1"/> + <speciesReference constant="true" species="C00143" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04970" metaid="_66809285-390c-4663-b51d-e2ad6feb0437" name="hexadecanoyl-[acp]:NADP+ trans-2-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.10</p> + <p>GENE_ASSOCIATION: buc_BU265</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_66809285-390c-4663-b51d-e2ad6feb0437"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU265"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05764" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C05763" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R10046" metaid="_9844e5ef-d496-4093-9ba5-be9f48fc8922" name="nicotinate D-ribonucleoside ribohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU541</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU541"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05841" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00121" stoichiometry="1"/> + <speciesReference constant="true" species="C00253" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03509" metaid="_2095d94c-ff90-48d1-9e75-e9d6f2fc5cdb" name="N-(5-Phospho-beta-D-ribosyl)anthranilate ketol-isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 5.3.1.24</p> + <p>GENE_ASSOCIATION: buc_BU279</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2095d94c-ff90-48d1-9e75-e9d6f2fc5cdb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.24"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU279"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04302" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C01302" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03508" metaid="_6d3be02c-7526-4ad3-86aa-7349a469fe05" name="1-(2-Carboxyphenylamino)-1-deoxy-D-ribulose-5-phosphate carboxy-lyase(cyclizing)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.1.1.48</p> + <p>GENE_ASSOCIATION: buc_BU279</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6d3be02c-7526-4ad3-86aa-7349a469fe05"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.48"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU279"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01302" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C03506" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02412" metaid="_750b5dfb-9cbb-41ed-8b06-2dbe5fdc6986" name="ATP:shikimate 3-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.1.71</p> + <p>GENE_ASSOCIATION: buc_BU539</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_750b5dfb-9cbb-41ed-8b06-2dbe5fdc6986"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.71"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU539"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00493" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C03175" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00112" metaid="_90f0e680-21d6-4cc8-b907-5b40a1b9f370" name="NADPH:NAD+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU185</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU185"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04955" metaid="_2f5d1743-e2fe-40f4-9f7c-05459433e32e" name="hexanoyl-[acp]:NAD+ trans-2-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.9</p> + <p>GENE_ASSOCIATION: buc_BU265</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2f5d1743-e2fe-40f4-9f7c-05459433e32e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU265"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05749" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C05748" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04952" metaid="a6330d81-c7d2-4fa7-99d0-846a431498a6" name="butyryl-[acyl-carrier protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.1.41</p> + <p>GENE_ASSOCIATION: buc_BU092</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a6330d81-c7d2-4fa7-99d0-846a431498a6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU092"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01209" stoichiometry="1"/> + <speciesReference constant="true" species="C05745" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05746" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00229" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02413" metaid="_59468fc6-02bb-41ad-8e33-fd9672660928" name="Shikimate:NADP+ 3-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.25</p> + <p>GENE_ASSOCIATION: buc_BU493</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_59468fc6-02bb-41ad-8e33-fd9672660928"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU493"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00493" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C02637" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04953" metaid="bdeebad2-aebe-49d8-9acf-44b3179483e2" name="(3R)-3-hydroxyhexanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.100</p> + <p>GENE_ASSOCIATION: buc_BU351</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bdeebad2-aebe-49d8-9acf-44b3179483e2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU351"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05747" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05746" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05805" metaid="_47ba4f1c-1595-4733-b2e6-e12f7c64f404" name="ADP:D-fructose-6-phosphate 1-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU305</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU305"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00085" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00354" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04958" metaid="_2b967c3c-4776-4984-92e2-f79b0e8d7f19" name="octanoyl-[acp]:NAD+ trans-2-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.9</p> + <p>GENE_ASSOCIATION: buc_BU265</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2b967c3c-4776-4984-92e2-f79b0e8d7f19"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU265"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05752" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C05751" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04959" metaid="_2414b702-5a74-4273-a7a7-d8389c9d4035" name="octanoyl-[acp]:NADP+ trans-2-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.10</p> + <p>GENE_ASSOCIATION: buc_BU265</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2414b702-5a74-4273-a7a7-d8389c9d4035"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU265"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + <speciesReference constant="true" species="C05752" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C05751" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02415" metaid="ad718078-de6c-4fcc-92b8-d4ba4f19ea36" name="Shikimate:pyrroloquinoline-quinone 3-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU493</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU493"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00493" stoichiometry="1"/> + <speciesReference constant="true" species="C00113" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C02637" stoichiometry="1"/> + <speciesReference constant="true" species="C01359" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04956" metaid="b1f91e6b-1caf-4e4e-bca7-e4db24298281" name="hexanoyl-[acp]:NADP+ trans-2-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.10</p> + <p>GENE_ASSOCIATION: buc_BU265</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b1f91e6b-1caf-4e4e-bca7-e4db24298281"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU265"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05749" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C05748" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04957" metaid="_66fe23cf-be09-4759-8ab7-c3e61bab1cc6" name="hexanoyl-[acyl-carrier protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.1.41</p> + <p>GENE_ASSOCIATION: buc_BU092</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_66fe23cf-be09-4759-8ab7-c3e61bab1cc6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU092"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05749" stoichiometry="1"/> + <speciesReference constant="true" species="C01209" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05750" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00229" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00480" metaid="_412c4b7f-3fb2-4caa-849d-c2b22d55ffeb" name="ATP:L-aspartate 4-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Lysine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Monobactam biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycine, serine and threonine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Cysteine and methionine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.2.4</p> + <p>GENE_ASSOCIATION: buc_BU194</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_412c4b7f-3fb2-4caa-849d-c2b22d55ffeb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.2.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU194"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00049" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C03082" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02780" metaid="_277775b1-93a7-4216-b29b-c1183aa595c1" name="R02780" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Starch and sucrose metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU063</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU063"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01083" stoichiometry="1"/> + <speciesReference constant="true" species="C04261" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00615" stoichiometry="1"/> + <speciesReference constant="true" species="C00689" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04961" metaid="_78a28ba8-224e-452b-9900-4b6a61f68f56" name="decanoyl-[acp]:NAD+ trans-2-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.9</p> + <p>GENE_ASSOCIATION: buc_BU265</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_78a28ba8-224e-452b-9900-4b6a61f68f56"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU265"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05755" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C05754" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04962" metaid="_32527a2f-3f48-4e72-968a-2b5877eed737" name="decanoyl-[acp]:NADP+ trans-2-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.10</p> + <p>GENE_ASSOCIATION: buc_BU265</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_32527a2f-3f48-4e72-968a-2b5877eed737"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU265"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + <speciesReference constant="true" species="C05755" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C05754" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00484" metaid="d70abfd6-b0fc-4b8f-b6dc-fca536578607" name="N-Carbamoyl-L-aspartate amidohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: ( buc_BU369 ) OR ( buc_BU370 )</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU370"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU369"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00438" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00049" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00014" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02783" metaid="_05df8539-724c-4459-809a-b28a5d14f6dc" name="UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase(ADP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Peptidoglycan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || D-Amino acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.2.9</p> + <p>GENE_ASSOCIATION: buc_BU218</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_05df8539-724c-4459-809a-b28a5d14f6dc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU218"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00217" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C01212" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00692" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04960" metaid="aa3510f7-2fca-439b-862a-b6bd688fb18e" name="Octanoyl-[acyl-carrier protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.1.41</p> + <p>GENE_ASSOCIATION: buc_BU092</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#aa3510f7-2fca-439b-862a-b6bd688fb18e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU092"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01209" stoichiometry="1"/> + <speciesReference constant="true" species="C05752" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00229" stoichiometry="1"/> + <speciesReference constant="true" species="C05753" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00122" metaid="cd667d40-a322-45e3-8120-fd5d0ae13300" name="ADP phosphohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU484</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU484"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03655" metaid="a8d41650-7092-4e40-9b07-911cea92a2c3" name="L-Histidine:tRNA(His) ligase (AMP-forming)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.21</p> + <p>GENE_ASSOCIATION: buc_BU288</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a8d41650-7092-4e40-9b07-911cea92a2c3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.21"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU288"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00135" stoichiometry="1"/> + <speciesReference constant="true" species="C01643" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C02988" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03896" metaid="e646b7a7-f83c-4076-84e7-b90906203b74" name="(R)-2-Methylmalate hydro-lyase (2-methylmaleate-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: C5-Branched dibasic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Valine, leucine and isoleucine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.2.1.35</p> + <p>GENE_ASSOCIATION: ( buc_BUpL06 ) OR ( buc_BUpL07 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e646b7a7-f83c-4076-84e7-b90906203b74"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.35"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BUpL06"/> + <fbc:geneProductRef fbc:geneProduct="buc_BUpL07"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C02612" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C02226" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03654" metaid="_6c97754f-5cc4-4c37-b077-0fc5a03ca8e5" name="glycine:tRNA(Gly) ligase (AMP-forming)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.14</p> + <p>GENE_ASSOCIATION: ( buc_BU135 ) OR ( buc_BU136 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6c97754f-5cc4-4c37-b077-0fc5a03ca8e5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU136"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU135"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01642" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00037" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C02412" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02568" metaid="_82a6158a-8cad-4429-9f18-375761bcbae6" name="D-fructose 1-phosphate D-glyceraldehyde-3-phosphate-lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fructose and mannose metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.1.2.13</p> + <p>GENE_ASSOCIATION: buc_BU451</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_82a6158a-8cad-4429-9f18-375761bcbae6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU451"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01094" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00577" stoichiometry="1"/> + <speciesReference constant="true" species="C00111" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03657" metaid="_7680f773-6bf2-4616-8f2f-251f29c8c47a" name="L-Leucine:tRNA(Leu) ligase (AMP-forming)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.4</p> + <p>GENE_ASSOCIATION: buc_BU444</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7680f773-6bf2-4616-8f2f-251f29c8c47a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU444"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01645" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00123" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C02047" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03898" metaid="bbb46322-2169-43e5-a305-79dd28ac34d8" name="2-methylmaleate hydratase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: C5-Branched dibasic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Valine, leucine and isoleucine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.2.1.35</p> + <p>GENE_ASSOCIATION: ( buc_BUpL06 ) OR ( buc_BUpL07 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bbb46322-2169-43e5-a305-79dd28ac34d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.35"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BUpL06"/> + <fbc:geneProductRef fbc:geneProduct="buc_BUpL07"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C02226" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C06032" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02325" metaid="a2e98bd0-ecf8-43fd-a4a6-0814fc9e43fd" name="dCTP aminohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pyrimidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.5.4.13</p> + <p>GENE_ASSOCIATION: buc_BU108</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a2e98bd0-ecf8-43fd-a4a6-0814fc9e43fd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU108"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00458" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00460" stoichiometry="1"/> + <speciesReference constant="true" species="C00014" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03656" metaid="_08264d14-c9c4-4f97-b236-cab2db76fe2f" name="L-Isoleucine:tRNA(Ile) ligase (AMP-forming)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.5</p> + <p>GENE_ASSOCIATION: buc_BU149</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_08264d14-c9c4-4f97-b236-cab2db76fe2f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU149"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00407" stoichiometry="1"/> + <speciesReference constant="true" species="C01644" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C03127" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03659" metaid="_95844853-74df-42b5-a178-70862919e5ec" name="L-Methionine:tRNAMet ligase (AMP-forming)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.10</p> + <p>GENE_ASSOCIATION: buc_BU109</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_95844853-74df-42b5-a178-70862919e5ec"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU109"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C01647" stoichiometry="1"/> + <speciesReference constant="true" species="C00073" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C02430" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02569" metaid="c6a2daf6-7d60-47e1-a64f-7d41ea914267" name="acetyl-CoA:enzyme N6-(dihydrolipoyl)lysine S-acetyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Pyruvate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Citrate cycle (TCA cycle) - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycolysis / Gluconeogenesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.1.12</p> + <p>GENE_ASSOCIATION: buc_BU206</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c6a2daf6-7d60-47e1-a64f-7d41ea914267"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU206"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00024" stoichiometry="1"/> + <speciesReference constant="true" species="C15973" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C16255" stoichiometry="1"/> + <speciesReference constant="true" species="C00010" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03658" metaid="dce0e15c-5985-42b1-aa2d-6dad65c246ce" name="L-lysine:tRNALys ligase (AMP-forming)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.6</p> + <p>GENE_ASSOCIATION: buc_BU437</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dce0e15c-5985-42b1-aa2d-6dad65c246ce"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU437"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01646" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00047" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + <speciesReference constant="true" species="C01931" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03660" metaid="fc7a9882-2f75-469a-a210-33f5551a83eb" name="L-Phenylalanine:tRNA(Ala) ligase (AMP-forming)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.20</p> + <p>GENE_ASSOCIATION: ( buc_BU129 ) OR ( buc_BU130 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fc7a9882-2f75-469a-a210-33f5551a83eb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU129"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU130"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00079" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C01648" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C03511" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02570" metaid="_739779d4-1363-4505-8fe1-19ccb0d17105" name="succinyl-CoA:enzyme N6-(dihydrolipoyl)lysine S-succinyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Citrate cycle (TCA cycle) - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.1.61</p> + <p>GENE_ASSOCIATION: buc_BU303</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_739779d4-1363-4505-8fe1-19ccb0d17105"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.61"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU303"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00091" stoichiometry="1"/> + <speciesReference constant="true" species="C15973" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C16254" stoichiometry="1"/> + <speciesReference constant="true" species="C00010" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03662" metaid="d91c1c62-8d00-473a-b1fa-b8dc843f05c5" name="L-Serine:tRNA(Ser) ligase (AMP-forming)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.11</p> + <p>GENE_ASSOCIATION: buc_BU313</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d91c1c62-8d00-473a-b1fa-b8dc843f05c5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU313"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01650" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00065" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + <speciesReference constant="true" species="C02553" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03661" metaid="c38ab8f1-8bff-4207-bfb5-a1356a8aeffc" name="L-proline:tRNA(Pro) ligase (AMP-forming)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.15</p> + <p>GENE_ASSOCIATION: buc_BU239</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c38ab8f1-8bff-4207-bfb5-a1356a8aeffc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU239"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01649" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00148" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C02702" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01122" metaid="_3798811c-efba-41f3-82df-e8974f9296d1" name="delta2-isopentenyl-diphosphate:tRNA isopentenyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.5.1.75</p> + <p>GENE_ASSOCIATION: buc_BU569</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3798811c-efba-41f3-82df-e8974f9296d1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.75"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU569"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00235" stoichiometry="1"/> + <speciesReference constant="true" species="C17324" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C04432" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03664" metaid="_2ffedb84-93a8-48c7-b738-5091516cf1b4" name="L-Tryptophan -tRNA(Trp) ligase (AMP-forming)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.2</p> + <p>GENE_ASSOCIATION: buc_BU536</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2ffedb84-93a8-48c7-b738-5091516cf1b4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU536"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C01652" stoichiometry="1"/> + <speciesReference constant="true" species="C00078" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C03512" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03663" metaid="_07152367-50f0-429f-81f1-98fa1258170d" name="L-Threonine:tRNA(Thr) ligase (AMP-forming)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.3</p> + <p>GENE_ASSOCIATION: buc_BU125</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_07152367-50f0-429f-81f1-98fa1258170d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU125"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01651" stoichiometry="1"/> + <speciesReference constant="true" species="C00188" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C02992" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00155" metaid="_21aff22d-6a7a-409a-9d41-c5a6bec94c49" name="UDP phosphohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU233</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU233"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00015" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00105" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R09084" metaid="_055e69d5-7360-428f-849d-65ec46fc1372" name="ADP:D-fructose-6-phosphate 1-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU305</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU305"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05345" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05378" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00497" metaid="e7056e67-720d-4915-96cd-2c35a103b3d7" name="gamma-L-glutamyl-L-cysteine:glycine ligase (ADP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glutathione metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.2.3</p> + <p>GENE_ASSOCIATION: buc_BU547</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e7056e67-720d-4915-96cd-2c35a103b3d7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU547"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00669" stoichiometry="1"/> + <speciesReference constant="true" species="C00037" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00051" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01224" metaid="_39a40585-1538-4454-b008-edcd788a6818" name="5-methyltetrahydrofolate:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU046</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU046"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + <speciesReference constant="true" species="C00440" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C00143" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01466" metaid="fb3592ad-44d6-4ce4-9e38-4574b30d53c3" name="O-phospho-L-homoserine phosphate-lyase (adding waterL-threonine-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycine, serine and threonine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.2.3.1</p> + <p>GENE_ASSOCIATION: buc_BU192</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fb3592ad-44d6-4ce4-9e38-4574b30d53c3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU192"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01102" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00188" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00014" metaid="e5eeb457-8f40-421d-87aa-99b8b4cc92ea" name="pyruvate:thiamin diphosphate acetaldehydetransferase (decarboxylating)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Pyruvate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Citrate cycle (TCA cycle) - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycolysis / Gluconeogenesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.2.4.1 / 2.2.1.6</p> + <p>GENE_ASSOCIATION: buc_BU205</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e5eeb457-8f40-421d-87aa-99b8b4cc92ea"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.4.1 / 2.2.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU205"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00068" stoichiometry="1"/> + <speciesReference constant="true" species="C00022" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05125" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02557" metaid="_9caa3e20-4d8d-4eee-be28-475242583b34" name="Deoxyadenosine:orthophosphate ribosyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.4.2.1</p> + <p>GENE_ASSOCIATION: buc_BU541</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9caa3e20-4d8d-4eee-be28-475242583b34"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU541"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00559" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00672" stoichiometry="1"/> + <speciesReference constant="true" species="C00147" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00257" metaid="aeeb6f26-aeb1-4f23-b92d-5896ced21d1f" name="Deamido-NAD+:L-glutamine amido-ligase (AMP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU174</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU174"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00064" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00857" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03646" metaid="cf76a2ac-3fd0-4f8a-abad-54db0a7349f9" name="L-Arginine:tRNA(Arg) ligase (AMP-forming)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.19</p> + <p>GENE_ASSOCIATION: buc_BU242</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cf76a2ac-3fd0-4f8a-abad-54db0a7349f9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU242"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01636" stoichiometry="1"/> + <speciesReference constant="true" species="C00062" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C02163" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01225" metaid="da274c1f-fea2-4491-b11b-a530324ea410" name="5,10-Methylenetetrahydrofolate:D-alanine 2-hydroxymethyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU289</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU289"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00133" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00143" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00101" stoichiometry="1"/> + <speciesReference constant="true" species="C02115" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01226" metaid="fee84961-2aec-409e-b3e5-bf153ac7db3f" name="5,10-Methylenetetrahydrofolate:3-methyl-2-oxobutanoate hydroxymethyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Pantothenate and CoA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.1.2.11</p> + <p>GENE_ASSOCIATION: buc_BU197</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fee84961-2aec-409e-b3e5-bf153ac7db3f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.2.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU197"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00143" stoichiometry="1"/> + <speciesReference constant="true" species="C00141" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00101" stoichiometry="1"/> + <speciesReference constant="true" species="C00966" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00137" metaid="_866314c7-49de-4cf5-b1c3-d3448060b288" name="ATP:nicotinamide-nucleotide adenylyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nicotinate and nicotinamide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.7.18</p> + <p>GENE_ASSOCIATION: buc_BU446</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_866314c7-49de-4cf5-b1c3-d3448060b288"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU446"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00455" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04617" metaid="ebec018a-fa84-49f9-92db-c7867d3ecfae" name="UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate:D-alanyl-D-alanine ligase(ADP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Lysine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Peptidoglycan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.2.10</p> + <p>GENE_ASSOCIATION: buc_BU220</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ebec018a-fa84-49f9-92db-c7867d3ecfae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU220"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00993" stoichiometry="1"/> + <speciesReference constant="true" species="C04877" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C04882" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00259" metaid="bf32d603-2780-4bff-9ab6-d72d11ff4c6e" name="acetyl-CoA:L-glutamate N-acetyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Arginine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.1.1</p> + <p>GENE_ASSOCIATION: buc_BU456</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bf32d603-2780-4bff-9ab6-d72d11ff4c6e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU456"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + <speciesReference constant="true" species="C00024" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00624" stoichiometry="1"/> + <speciesReference constant="true" species="C00010" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03648" metaid="_08d59e09-0a2b-440d-816b-1bb44ad3d310" name="L-Asparagine:tRNA(Asn) ligase (AMP-forming)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.22</p> + <p>GENE_ASSOCIATION: buc_BU360</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_08d59e09-0a2b-440d-816b-1bb44ad3d310"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.22"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01637" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00152" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C03402" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01229" metaid="_0ef9c1f1-1d0d-4a37-a5a2-bf1ad31432be" name="GMP:diphosphate 5-phospho-alpha-D-ribosyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.4.2.8 / 2.4.2.22</p> + <p>GENE_ASSOCIATION: buc_BU251</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0ef9c1f1-1d0d-4a37-a5a2-bf1ad31432be"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.8 / 2.4.2.22"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU251"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00144" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00119" stoichiometry="1"/> + <speciesReference constant="true" species="C00242" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00260" metaid="_9dab1151-366d-4c68-8511-5823cb858556" name="glutamate racemase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || D-Amino acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 5.1.1.3</p> + <p>GENE_ASSOCIATION: buc_BU554</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9dab1151-366d-4c68-8511-5823cb858556"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.1.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU554"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00217" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02320" metaid="_29aef70b-7bf3-4fac-8043-b6cef2d6512c" name="NTP:pyruvate O2-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Pyruvate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.1.40</p> + <p>GENE_ASSOCIATION: buc_BU319</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_29aef70b-7bf3-4fac-8043-b6cef2d6512c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.40"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU319"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00201" stoichiometry="1"/> + <speciesReference constant="true" species="C00022" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00074" stoichiometry="1"/> + <speciesReference constant="true" species="C00454" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03650" metaid="_2b1ef2b3-d61f-4699-b3bb-7321b8d9ab9e" name="L-Cysteine:tRNA(Cys) ligase (AMP-forming)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.16</p> + <p>GENE_ASSOCIATION: buc_BU487</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2b1ef2b3-d61f-4699-b3bb-7321b8d9ab9e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU487"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00097" stoichiometry="1"/> + <speciesReference constant="true" species="C01639" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C03125" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01353" metaid="_1719db04-e41a-41f9-92e1-ce5d52472bb7" name="ATP:propanoate phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Propanoate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.2.1</p> + <p>GENE_ASSOCIATION: buc_BU175</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1719db04-e41a-41f9-92e1-ce5d52472bb7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU175"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00163" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C02876" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03652" metaid="ead26c3b-3d7e-428e-be2f-c01dfd166fb2" name="L-Glutamine:tRNA(Gln) ligase (AMP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.18</p> + <p>GENE_ASSOCIATION: buc_BU415</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ead26c3b-3d7e-428e-be2f-c01dfd166fb2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU415"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00064" stoichiometry="1"/> + <speciesReference constant="true" species="C01640" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C02282" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03038" metaid="_04b48919-6f2c-4b54-86e7-1737b4a7a2dc" name="L-Alanine:tRNA(Ala) ligase (AMP-forming)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.7</p> + <p>GENE_ASSOCIATION: buc_BU403</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_04b48919-6f2c-4b54-86e7-1737b4a7a2dc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU403"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C01635" stoichiometry="1"/> + <speciesReference constant="true" species="C00041" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00886" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R07763" metaid="_15757fb2-228b-4e39-b87b-58beb5ed0cb3" name="R07763" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.100</p> + <p>GENE_ASSOCIATION: buc_BU351</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_15757fb2-228b-4e39-b87b-58beb5ed0cb3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU351"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C16219" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C16220" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02073" metaid="_17574f6b-23d9-496a-af64-436c8c52c085" name="diphosphate:beta-D-fructose-6-phosphate 1-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU305</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU305"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05345" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05378" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R07762" metaid="f50358fd-09de-4d7d-9e2c-c75328e2479d" name="R07762" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.1.41</p> + <p>GENE_ASSOCIATION: buc_BU092</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f50358fd-09de-4d7d-9e2c-c75328e2479d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU092"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05764" stoichiometry="1"/> + <speciesReference constant="true" species="C01209" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C16219" stoichiometry="1"/> + <speciesReference constant="true" species="C00229" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R07765" metaid="_2b3bdb19-205d-4d0d-883c-dcc03bc658fd" name="octadecanoyl-[acp]:NAD+ trans-2-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.9</p> + <p>GENE_ASSOCIATION: buc_BU265</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2b3bdb19-205d-4d0d-883c-dcc03bc658fd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU265"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C16221" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C04088" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05332" metaid="_273f4f30-f63a-46b0-9a38-e15b0bce1def" name="Acetyl-CoA:D-glucosamine-1-phosphate N-acetyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Amino sugar and nucleotide sugar metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of nucleotide sugars - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.1.157</p> + <p>GENE_ASSOCIATION: buc_BU027</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_273f4f30-f63a-46b0-9a38-e15b0bce1def"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.157"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU027"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00024" stoichiometry="1"/> + <speciesReference constant="true" species="C06156" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C04501" stoichiometry="1"/> + <speciesReference constant="true" species="C00010" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04001" metaid="_1b816962-c10d-4adb-9d99-5d27660451b8" name="3-Isopropylmalate hydro-lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Valine, leucine and isoleucine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.2.1.33</p> + <p>GENE_ASSOCIATION: ( buc_BUpL06 ) OR ( buc_BUpL07 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1b816962-c10d-4adb-9d99-5d27660451b8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.33"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BUpL06"/> + <fbc:geneProductRef fbc:geneProduct="buc_BUpL07"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04411" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C02631" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04241" metaid="_6aa20b5b-e7c8-4a2e-9d04-4d23f3d473c2" name="tetrahydropteroyl-gamma-polyglutamate:L-glutamate gamma-ligase (ADP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Folate biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.2.17</p> + <p>GENE_ASSOCIATION: buc_BU167</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6aa20b5b-e7c8-4a2e-9d04-4d23f3d473c2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU167"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C03541" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C03541" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03035" metaid="_1e36731a-2156-4508-a83b-9aaeb5176b25" name="ATP:pantetheine-4'-phosphate adenylyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Pantothenate and CoA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.7.3</p> + <p>GENE_ASSOCIATION: buc_BU583</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1e36731a-2156-4508-a83b-9aaeb5176b25"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU583"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C01134" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00882" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05577" metaid="_323f25c5-87c1-49be-a961-25d25dec3f6a" name="L-Aspartate:tRNA(Asp) ligase (AMP-forming)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.12</p> + <p>GENE_ASSOCIATION: buc_BU316</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_323f25c5-87c1-49be-a961-25d25dec3f6a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU316"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00049" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C01638" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C02984" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04125" metaid="d57ba379-98db-4b51-8197-7d986be5f93e" name="[protein]-S8-aminomethyldihydrolipoyllysine:tetrahydrofolate aminomethyltransferase (ammonia-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU289</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU289"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01242" stoichiometry="1"/> + <speciesReference constant="true" species="C00101" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00014" stoichiometry="1"/> + <speciesReference constant="true" species="C00143" stoichiometry="1"/> + <speciesReference constant="true" species="C02972" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05578" metaid="_6ee10a26-0813-4305-b825-a4debfe8a962" name="L-glutamate:tRNA(Glu) ligase (AMP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Porphyrin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.17</p> + <p>GENE_ASSOCIATION: buc_BU070</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6ee10a26-0813-4305-b825-a4debfe8a962"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C01641" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C02987" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04365" metaid="c41c6285-310c-4f20-9894-7e8020c12dc1" name="Succinyl-CoA:2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Lysine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.1.117</p> + <p>GENE_ASSOCIATION: buc_BU229</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c41c6285-310c-4f20-9894-7e8020c12dc1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.117"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU229"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C03972" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00091" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C04462" stoichiometry="1"/> + <speciesReference constant="true" species="C00010" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03036" metaid="_2e38b322-f95c-4606-9764-26b62d88ac0f" name="Dephospho-CoA nucleotidohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU583</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU583"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00882" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C01134" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03270" metaid="a31e2a65-4bcb-49fe-9cec-f592efe770f4" name="R03270" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Pyruvate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Citrate cycle (TCA cycle) - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycolysis / Gluconeogenesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.2.4.1</p> + <p>GENE_ASSOCIATION: buc_BU205</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a31e2a65-4bcb-49fe-9cec-f592efe770f4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU205"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05125" stoichiometry="1"/> + <speciesReference constant="true" species="C15972" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00068" stoichiometry="1"/> + <speciesReference constant="true" species="C16255" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02060" metaid="a6be0df8-9521-49eb-a79a-681f78ee3c0c" name="D-Glucosamine 1-phosphate 1,6-phosphomutase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Amino sugar and nucleotide sugar metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of nucleotide sugars - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 5.4.2.10</p> + <p>GENE_ASSOCIATION: buc_BU381</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a6be0df8-9521-49eb-a79a-681f78ee3c0c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU381"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C06156" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00352" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R08628" metaid="_50352665-574f-4171-af31-b08e3b83e2b3" name="2-(3'-methylthio)butylmalate hydroxymutase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BUpL06</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BUpL06"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C17218" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C17219" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R08634" metaid="f2beb3df-6682-49ad-b3a5-ebe93c487385" name="2-(3'-methylthio)pentylmalate hydroxymutase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BUpL06</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BUpL06"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C17222" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C17223" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02098" metaid="_74a231f1-f462-4283-b7c4-a1176e057156" name="ATP:dUMP phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pyrimidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.4.9</p> + <p>GENE_ASSOCIATION: buc_BU353</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_74a231f1-f462-4283-b7c4-a1176e057156"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU353"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00365" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C01346" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04394" metaid="_169cd5bc-0bee-4906-9ac5-4826cc902391" name="protein-N(pi)-phosphohistidine:salicin 6-phosphotransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Glycolysis / Gluconeogenesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU063</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU063"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04261" stoichiometry="1"/> + <speciesReference constant="true" species="C01451" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C06188" stoichiometry="1"/> + <speciesReference constant="true" species="C00615" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04037" metaid="_2bd0dbf3-a052-4fb8-8f7f-d176500f7918" name="1-(5-phospho-D-ribosyl)-AMP 1,6-hydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Histidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.5.4.19</p> + <p>GENE_ASSOCIATION: buc_BU106</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2bd0dbf3-a052-4fb8-8f7f-d176500f7918"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.5.4.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU106"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C02741" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C04896" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04035" metaid="_738b8870-1670-442c-9950-ade5021365e9" name="Phosphoribosyl-ATP pyrophosphohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Histidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.6.1.31</p> + <p>GENE_ASSOCIATION: buc_BU106</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_738b8870-1670-442c-9950-ade5021365e9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.6.1.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU106"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C02739" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C02741" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02090" metaid="_71002754-65d6-4565-80df-19780b0e4c0f" name="ATP:dGMP phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.4.8</p> + <p>GENE_ASSOCIATION: buc_BU434</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_71002754-65d6-4565-80df-19780b0e4c0f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU434"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00362" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00361" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02092" metaid="a4edadef-0028-4e32-a4b4-71116be278d3" name="dTDP phosphohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU353</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU353"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00363" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00364" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02094" metaid="f8f8cff9-988d-45b9-a5fb-9e85955a5a1b" name="ATP:dTMP phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pyrimidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.4.9</p> + <p>GENE_ASSOCIATION: buc_BU353</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f8f8cff9-988d-45b9-a5fb-9e85955a5a1b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU353"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00364" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00363" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03182" metaid="e883c1e3-14d0-4040-9698-a8641bc39cfc" name="7,8-Diaminononanoate:carbon-dioxide cyclo-ligase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biotin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.3.3</p> + <p>GENE_ASSOCIATION: buc_BU290</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e883c1e3-14d0-4040-9698-a8641bc39cfc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.3.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU290"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C01037" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C01909" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R07411" metaid="fe8b7ed8-42a4-4d45-aae7-0da4820d0ac6" name="(2E,6E)-farnesyl-diphosphate:protoheme IX farnesyltranstransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Porphyrin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.5.1.141</p> + <p>GENE_ASSOCIATION: buc_BU468</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fe8b7ed8-42a4-4d45-aae7-0da4820d0ac6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.141"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU468"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00032" stoichiometry="1"/> + <speciesReference constant="true" species="C00448" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C15672" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R08624" metaid="f6a67f12-e602-424b-aec6-1942553e2a6d" name="2-(3'-methylthio)propylmalate hydroxymutase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BUpL06</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BUpL06"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C17214" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C17215" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R06447" metaid="_40ea1a7b-06db-4df1-a661-87239a228e57" name="(2E,6E)-farnesyl-diphosphate:isopentenyl-diphosphate cistransferase (adding 8 isopentenyl units)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Peptidoglycan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Terpenoid backbone biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.5.1.31</p> + <p>GENE_ASSOCIATION: buc_BU236</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_40ea1a7b-06db-4df1-a661-87239a228e57"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU236"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00448" stoichiometry="1"/> + <speciesReference constant="true" species="C00129" stoichiometry="8"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00013" stoichiometry="8"/> + <speciesReference constant="true" species="C04574" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R08620" metaid="_36eea690-ff5d-4cc3-9c72-3a439d384fad" name="2-(2'-methylthio)ethylmalate hydroxymutase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BUpL06</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BUpL06"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C17210" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C17212" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R09830" metaid="d8035b53-5a4f-4c95-bd27-453b10dee09c" name="L-Tyrosine:NAD+ oxidoreductase (deaminating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU101</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU101"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + <speciesReference constant="true" species="C00082" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00014" stoichiometry="1"/> + <speciesReference constant="true" species="C01179" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03237" metaid="a75183ef-b2fc-47ed-bb11-0bcab167ae58" name="CTP:D-tagatose 6-phosphate 1-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.1.11</p> + <p>GENE_ASSOCIATION: buc_BU305</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a75183ef-b2fc-47ed-bb11-0bcab167ae58"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU305"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00063" stoichiometry="1"/> + <speciesReference constant="true" species="C01097" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00112" stoichiometry="1"/> + <speciesReference constant="true" species="C03785" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02147" metaid="_15adfbfc-0328-4f19-a76d-614a71af6d13" name="guanosine:phosphate alpha-D-ribosyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.4.2.1</p> + <p>GENE_ASSOCIATION: buc_BU541</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_15adfbfc-0328-4f19-a76d-614a71af6d13"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU541"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00387" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00620" stoichiometry="1"/> + <speciesReference constant="true" species="C00242" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03236" metaid="e7da83aa-f95e-4961-985f-ded3d32c9ada" name="ATP:D-tagatose-6-phosphate 1-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.1.11</p> + <p>GENE_ASSOCIATION: buc_BU305</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e7da83aa-f95e-4961-985f-ded3d32c9ada"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU305"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C01097" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C03785" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04325" metaid="_3d369ccb-bd1b-450d-9905-b5ee6924fd3a" name="10-formyltetrahydrofolate:5'-phosphoribosylglycinamide formyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: ( buc_BU031 ) OR ( buc_BU497 )</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU031"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU497"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C03838" stoichiometry="1"/> + <speciesReference constant="true" species="C00234" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C04376" stoichiometry="1"/> + <speciesReference constant="true" species="C00101" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03239" metaid="ff35837d-d4ee-4ab4-b259-85195accbfcf" name="ITP:D-tagatose 6-phosphate 1-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.1.11</p> + <p>GENE_ASSOCIATION: buc_BU305</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ff35837d-d4ee-4ab4-b259-85195accbfcf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU305"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00081" stoichiometry="1"/> + <speciesReference constant="true" species="C01097" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C03785" stoichiometry="1"/> + <speciesReference constant="true" species="C00104" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03238" metaid="b264623f-e084-4001-a34b-24f5d32463da" name="UTP:D-tagatose 6-phosphate 1-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.1.11</p> + <p>GENE_ASSOCIATION: buc_BU305</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b264623f-e084-4001-a34b-24f5d32463da"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU305"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00075" stoichiometry="1"/> + <speciesReference constant="true" species="C01097" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C03785" stoichiometry="1"/> + <speciesReference constant="true" species="C00015" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01061" metaid="_0f15a449-02b9-423d-825a-b1196cb89018" name="D-glyceraldehyde-3-phosphate:NAD+ oxidoreductase (phosphorylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycolysis / Gluconeogenesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.2.1.12</p> + <p>GENE_ASSOCIATION: buc_BU298</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0f15a449-02b9-423d-825a-b1196cb89018"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU298"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00118" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00236" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05662" metaid="ef24eb21-9018-46ae-8aee-6edc522eefaf" name="UDP-N-acetyl-D-glucosamine:N-acetyl-alpha-D-muramyl(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Peptidoglycan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.4.1.227</p> + <p>GENE_ASSOCIATION: buc_BU216</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ef24eb21-9018-46ae-8aee-6edc522eefaf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.227"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU216"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04851" stoichiometry="1"/> + <speciesReference constant="true" species="C00043" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00015" stoichiometry="1"/> + <speciesReference constant="true" species="C05893" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04573" metaid="_9e482842-96e3-44b4-b1d0-697acbc0e646" name="UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine:alanyl-D-alanine ligase (ADP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Peptidoglycan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.2.10</p> + <p>GENE_ASSOCIATION: buc_BU220</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9e482842-96e3-44b4-b1d0-697acbc0e646"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU220"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00993" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C05892" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C04702" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01063" metaid="f422bd23-f733-4249-8537-54e9da9268ca" name="D-glyceraldehyde-3-phosphate:NADP+ oxidoreductase (phosphorylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU298</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU298"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00118" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00236" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01185" metaid="de2dc886-7bb1-4915-ba2b-6fc070612d0c" name="1D-myo-inositol 1-phosphate phosphohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Inositol phosphate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.1.3.25</p> + <p>GENE_ASSOCIATION: buc_BU285</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#de2dc886-7bb1-4915-ba2b-6fc070612d0c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU285"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01177" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00137" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01186" metaid="_1ae89167-745b-4c67-9b7c-6e95c8b92ae4" name="1D-myo-inositol 4-phosphate phosphohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Inositol phosphate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.1.3.25</p> + <p>GENE_ASSOCIATION: buc_BU285</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1ae89167-745b-4c67-9b7c-6e95c8b92ae4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU285"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C03546" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00137" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01187" metaid="acefa705-587e-40d0-a2b6-920fb3b51df7" name="1D-myo-inositol 3-phosphate phosphohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Inositol phosphate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.1.3.25</p> + <p>GENE_ASSOCIATION: buc_BU285</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#acefa705-587e-40d0-a2b6-920fb3b51df7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU285"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C04006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00137" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03243" metaid="_44eebad5-3771-4dbd-9b78-cb7fb53bdf2c" name="5-Amino-2-oxopentanoate:2-oxoglutarate aminotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Histidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.6.1.9</p> + <p>GENE_ASSOCIATION: buc_BU101</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_44eebad5-3771-4dbd-9b78-cb7fb53bdf2c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU101"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00026" stoichiometry="1"/> + <speciesReference constant="true" species="C01100" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + <speciesReference constant="true" species="C01267" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01067" metaid="_68fb9bf1-7405-44ee-98e2-2530770aef30" name="D-Fructose 6-phosphate:D-glyceraldehyde-3-phosphate glycolaldehyde transferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.2.1.1</p> + <p>GENE_ASSOCIATION: buc_BU094</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_68fb9bf1-7405-44ee-98e2-2530770aef30"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.2.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU094"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00085" stoichiometry="1"/> + <speciesReference constant="true" species="C00118" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00231" stoichiometry="1"/> + <speciesReference constant="true" species="C00279" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03004" metaid="b4a7edc5-32d3-40b1-8a51-e0c773b04928" name="Deamino-NAD+ nucleotidohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU446</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU446"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00857" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C01185" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02035" metaid="_2cbd17ee-23ce-45c7-af42-ccbd673a21b6" name="6-Phospho-D-glucono-1,5-lactone lactonohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pentose phosphate pathway - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.1.1.31</p> + <p>GENE_ASSOCIATION: buc_BU293</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2cbd17ee-23ce-45c7-af42-ccbd673a21b6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.1.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU293"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01236" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00345" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01068" metaid="b3962df4-c010-49fd-83ca-4cd5034ab81c" name="D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase (glycerone-phosphate-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Methane metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.1.2.13</p> + <p>GENE_ASSOCIATION: buc_BU451</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b3962df4-c010-49fd-83ca-4cd5034ab81c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU451"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00354" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00111" stoichiometry="1"/> + <speciesReference constant="true" species="C00118" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04558" metaid="f33d55f6-cf91-4450-8d39-1bb0a05983ec" name="5-[(5-phospho-1-deoxy-D-ribulos-1-ylamino)methylideneamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate-lyase (L-glutamine-hydrolysing 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Histidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.3.2.10</p> + <p>GENE_ASSOCIATION: ( buc_BU103 ) OR ( buc_BU105 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f33d55f6-cf91-4450-8d39-1bb0a05983ec"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.3.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU103"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU105"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04916" stoichiometry="1"/> + <speciesReference constant="true" species="C00064" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C04666" stoichiometry="1"/> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + <speciesReference constant="true" species="C04677" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04559" metaid="_27585989-9a30-49ab-83e4-4c2d5b41a2b6" name="1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole AMP-lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.3.2.2</p> + <p>GENE_ASSOCIATION: buc_BU263</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_27585989-9a30-49ab-83e4-4c2d5b41a2b6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.3.2.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU263"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04823" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00122" stoichiometry="1"/> + <speciesReference constant="true" species="C04677" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01049" metaid="bb971c11-8289-44ba-b99a-dfbe1538169f" name="ATP:D-ribose-5-phosphate diphosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pentose phosphate pathway - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.6.1</p> + <p>GENE_ASSOCIATION: buc_BU169</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bb971c11-8289-44ba-b99a-dfbe1538169f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.6.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU169"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00117" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00119" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05645" metaid="_09df0986-afdf-4112-b858-e43472a60f04" name="D-glycero-beta-D-manno-heptose-7-phosphate aldose-ketose-isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Lipopolysaccharide biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of nucleotide sugars - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 5.3.1.28</p> + <p>GENE_ASSOCIATION: buc_BU250</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_09df0986-afdf-4112-b858-e43472a60f04"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.28"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05382" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C07836" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02018" metaid="_7de68fda-c15f-4cc2-b54c-9363becb94f7" name="2'-deoxyuridine 5'-diphosphate:oxidized-thioredoxin 2'-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pyrimidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.17.4.1</p> + <p>GENE_ASSOCIATION: ( buc_BU178 ) OR ( buc_BU179 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7de68fda-c15f-4cc2-b54c-9363becb94f7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU178"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU179"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01346" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00343" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00342" stoichiometry="1"/> + <speciesReference constant="true" species="C00015" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02017" metaid="_0e68a8de-7064-45b7-84f8-b1d2c60cfda9" name="2'-deoxyadenosine 5'-diphosphate:oxidized-thioredoxin 2'-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.17.4.1</p> + <p>GENE_ASSOCIATION: ( buc_BU178 ) OR ( buc_BU179 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0e68a8de-7064-45b7-84f8-b1d2c60cfda9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU178"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU179"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00206" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00343" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00342" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R06613" metaid="a00d58bb-0708-4b83-a025-342eeee4fbe9" name="5,10-methylenetetrahydrofolate,NADPH:dUMP C-methyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU440</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU440"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00365" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C00143" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00101" stoichiometry="1"/> + <speciesReference constant="true" species="C00364" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02019" metaid="_065f196a-2152-4eea-840e-5e72945e3b3b" name="2'-deoxyguanosine 5'-diphosphate:oxidized-thioredoxin 2'-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.17.4.1</p> + <p>GENE_ASSOCIATION: ( buc_BU178 ) OR ( buc_BU179 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_065f196a-2152-4eea-840e-5e72945e3b3b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU178"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU179"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00361" stoichiometry="1"/> + <speciesReference constant="true" species="C00343" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00035" stoichiometry="1"/> + <speciesReference constant="true" species="C00342" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04439" metaid="_97cddb2b-bc39-4a65-8673-f0086e7639d9" name="(R)-2,3-dihydroxy-3-methylbutanoate:NADP+ oxidoreductase (isomerizing)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Pantothenate and CoA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.86</p> + <p>GENE_ASSOCIATION: buc_BU599</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_97cddb2b-bc39-4a65-8673-f0086e7639d9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.86"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU599"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04272" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C06010" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04440" metaid="_9a20887b-7f09-418f-9a27-f5dd65ff3fc4" name="(R)-2,3-Dihydroxy-3-methylbutanoate:NADP+ oxidoreductase (isomerizing)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Valine, leucine and isoleucine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.86</p> + <p>GENE_ASSOCIATION: buc_BU599</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a20887b-7f09-418f-9a27-f5dd65ff3fc4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.86"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU599"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04272" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C04181" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04441" metaid="_4d5bedbe-69b3-4c5d-82d2-919eac138557" name="(R)-2,3-Dihydroxy-3-methylbutanoate hydro-lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Pantothenate and CoA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Valine, leucine and isoleucine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.2.1.9</p> + <p>GENE_ASSOCIATION: buc_BU600</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4d5bedbe-69b3-4c5d-82d2-919eac138557"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU600"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04272" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00141" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02142" metaid="_090dbd61-22b3-486c-b471-2fa8d8da82e1" name="XMP:pyrophosphate phosphoribosyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.4.2.8 / 2.4.2.22</p> + <p>GENE_ASSOCIATION: buc_BU251</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_090dbd61-22b3-486c-b471-2fa8d8da82e1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.8 / 2.4.2.22"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU251"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00655" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00119" stoichiometry="1"/> + <speciesReference constant="true" species="C00385" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02021" metaid="_5ac00fb6-ee89-48a8-b3c6-bfe6d96dc0a6" name="adenosine 3',5'-bisphosphate,sulfite:oxidized-thioredoxin oxidoreductase (3'-phosphoadenosine-5'-phosphosulfate -forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Sulfur metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.8.4.8</p> + <p>GENE_ASSOCIATION: buc_BU426</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ac00fb6-ee89-48a8-b3c6-bfe6d96dc0a6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.4.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU426"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00342" stoichiometry="1"/> + <speciesReference constant="true" species="C00053" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00054" stoichiometry="1"/> + <speciesReference constant="true" species="C00343" stoichiometry="1"/> + <speciesReference constant="true" species="C00094" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00084" metaid="cab80945-b273-462a-88a5-c4b7813143cb" name="porphobilinogen:(4-[2-carboxyethyl]-3-[carboxymethyl]pyrrol-2-yl)methyltransferase (hydrolysing)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Porphyrin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.5.1.61</p> + <p>GENE_ASSOCIATION: buc_BU591</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cab80945-b273-462a-88a5-c4b7813143cb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.61"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU591"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00931" stoichiometry="4"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00014" stoichiometry="4"/> + <speciesReference constant="true" species="C01024" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03231" metaid="_0bd7b714-267f-4337-8629-f961a1590095" name="S-Adenosyl-L-methionine:8-amino-7-oxononanoate aminotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biotin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.6.1.62</p> + <p>GENE_ASSOCIATION: buc_BU292</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0bd7b714-267f-4337-8629-f961a1590095"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.62"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU292"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00019" stoichiometry="1"/> + <speciesReference constant="true" species="C01092" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C04425" stoichiometry="1"/> + <speciesReference constant="true" species="C01037" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04560" metaid="_4e5ec5ae-6224-436d-9ab1-4bb989d60e81" name="10-Formyltetrahydrofolate:5'-phosphoribosyl-5-amino-4-imidazolecarboxamide formyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || One carbon pool by folate - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.1.2.3</p> + <p>GENE_ASSOCIATION: buc_BU031</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4e5ec5ae-6224-436d-9ab1-4bb989d60e81"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.2.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU031"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00234" stoichiometry="1"/> + <speciesReference constant="true" species="C04677" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00101" stoichiometry="1"/> + <speciesReference constant="true" species="C04734" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03596" metaid="eb1513ab-b132-47d8-828e-7df3c4dd0d08" name="hydrogen selenide:NADP+ oxidoreductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Selenocompound metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.8.1.9</p> + <p>GENE_ASSOCIATION: buc_BU314</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eb1513ab-b132-47d8-828e-7df3c4dd0d08"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU314"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01528" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="3"/> + <speciesReference constant="true" species="C00006" stoichiometry="3"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00005" stoichiometry="3"/> + <speciesReference constant="true" species="C05684" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="5"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04566" metaid="d383f5c8-50e3-4e00-a03c-db05865f7ae4" name="(3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein]:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.100</p> + <p>GENE_ASSOCIATION: buc_BU351</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d383f5c8-50e3-4e00-a03c-db05865f7ae4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU351"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04688" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05759" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02143" metaid="cb9d3498-a490-4e83-b8a8-08b114b564d3" name="Xanthosine ribohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU541</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU541"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C01762" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00121" stoichiometry="1"/> + <speciesReference constant="true" species="C00385" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01056" metaid="_92cfa3c9-be92-4f42-9c09-247769fb18ef" name="D-ribose-5-phosphate aldose-ketose-isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pentose phosphate pathway - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 5.3.1.6</p> + <p>GENE_ASSOCIATION: buc_BU411</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_92cfa3c9-be92-4f42-9c09-247769fb18ef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU411"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00117" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00199" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01057" metaid="e7fcb7b0-b2c7-4bd2-a55c-8a7d18dde393" name="D-Ribose 1,5-phosphomutase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pentose phosphate pathway - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 5.4.2.7</p> + <p>GENE_ASSOCIATION: buc_BU542</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e7fcb7b0-b2c7-4bd2-a55c-8a7d18dde393"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.2.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU542"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00620" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00117" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02024" metaid="_664315db-39b2-4b29-893a-cebd522efb0c" name="2'-deoxycytidine diphosphate:oxidized-thioredoxin 2'-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pyrimidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.17.4.1</p> + <p>GENE_ASSOCIATION: ( buc_BU178 ) OR ( buc_BU179 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_664315db-39b2-4b29-893a-cebd522efb0c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU178"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU179"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00705" stoichiometry="1"/> + <speciesReference constant="true" species="C00343" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00112" stoichiometry="1"/> + <speciesReference constant="true" species="C00342" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R07618" metaid="f48cdd0e-2c68-44e4-88ef-444dacaac097" name="enzyme N6-(dihydrolipoyl)lysine:NAD+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Pyruvate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Propanoate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Citrate cycle (TCA cycle) - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycolysis / Gluconeogenesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum) || Valine, leucine and isoleucine degradation - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.8.1.4</p> + <p>GENE_ASSOCIATION: buc_BU207</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f48cdd0e-2c68-44e4-88ef-444dacaac097"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU207"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C15973" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C15972" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01083" metaid="_39944541-fcd9-4423-9d2f-bf61e76606bf" name="N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Alanine, aspartate and glutamate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.3.2.2</p> + <p>GENE_ASSOCIATION: buc_BU263</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_39944541-fcd9-4423-9d2f-bf61e76606bf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.3.2.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU263"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C03794" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00122" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02294" metaid="_64ea88c3-ec6a-4fe5-b30b-a615280f8ade" name="N-Ribosylnicotinamide:orthophosphate ribosyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nicotinate and nicotinamide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.4.2.1</p> + <p>GENE_ASSOCIATION: buc_BU541</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_64ea88c3-ec6a-4fe5-b30b-a615280f8ade"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU541"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C03150" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00153" stoichiometry="1"/> + <speciesReference constant="true" species="C00620" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04111" metaid="_4b451016-4167-4ae5-9eff-44e1d2e3fe4b" name="protein-N(pi)-phosphohistidine:maltose 6'-phosphotransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Starch and sucrose metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU063</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU063"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04261" stoichiometry="1"/> + <speciesReference constant="true" species="C00208" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00615" stoichiometry="1"/> + <speciesReference constant="true" species="C02995" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01086" metaid="eba5b04e-4587-4d83-bf8c-d3da4334e181" name="2-(Nomega-L-arginino)succinate arginine-lyase (fumarate-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Arginine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Alanine, aspartate and glutamate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.3.2.1</p> + <p>GENE_ASSOCIATION: buc_BU051</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eba5b04e-4587-4d83-bf8c-d3da4334e181"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.3.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU051"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C03406" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00062" stoichiometry="1"/> + <speciesReference constant="true" species="C00122" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02295" metaid="e1dbc085-9260-4808-8074-8f8515b5e8f1" name="Nicotinate D-ribonucleoside:orthophosphate ribosyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nicotinate and nicotinamide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.4.2.1</p> + <p>GENE_ASSOCIATION: buc_BU541</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e1dbc085-9260-4808-8074-8f8515b5e8f1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU541"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05841" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00253" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00620" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02297" metaid="_3f913402-36b9-462c-ac2c-9667a29565fa" name="xanthosine:orthophosphate ribosyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nucleotide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.4.2.1</p> + <p>GENE_ASSOCIATION: buc_BU541</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3f913402-36b9-462c-ac2c-9667a29565fa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU541"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C01762" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00620" stoichiometry="1"/> + <speciesReference constant="true" species="C00385" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05688" metaid="bb1c4422-7772-4765-b9e0-3e2ed5cea128" name="1-Deoxy-D-xylulose-5-phosphate isomeroreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Terpenoid backbone biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.267</p> + <p>GENE_ASSOCIATION: buc_BU235</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bb1c4422-7772-4765-b9e0-3e2ed5cea128"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.267"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU235"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C11434" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C11437" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04475" metaid="dd253c34-bc19-46b1-95b2-f2276158205e" name="N-Succinyl-L-2,6-diaminoheptanedioate:2-oxoglutarate amino-transferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Lysine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.6.1.17</p> + <p>GENE_ASSOCIATION: buc_BU534</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dd253c34-bc19-46b1-95b2-f2276158205e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU534"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00026" stoichiometry="1"/> + <speciesReference constant="true" species="C04421" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C04462" stoichiometry="1"/> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04355" metaid="_5c646963-3978-43eb-9860-9a977b132072" name="Acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] C-acyltransferase (decarboxylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Fatty acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fatty acid biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.1.41</p> + <p>GENE_ASSOCIATION: buc_BU092</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5c646963-3978-43eb-9860-9a977b132072"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU092"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C03939" stoichiometry="1"/> + <speciesReference constant="true" species="C01209" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05744" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00229" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R10907" metaid="_045e2ed0-96f3-4307-8499-fc7c4ca4ec5e" name="beta-D-glucose-6-phosphate:NAD+ 1-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pentose phosphate pathway - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.363</p> + <p>GENE_ASSOCIATION: buc_BU320</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_045e2ed0-96f3-4307-8499-fc7c4ca4ec5e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.363"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU320"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01172" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C01236" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02291" metaid="abf4720e-213f-4c3d-9a97-d6ddc5a956e7" name="L-Aspartate-4-semialdehyde:NADP+ oxidoreductase (phosphorylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Lysine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycine, serine and threonine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Cysteine and methionine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.2.1.11</p> + <p>GENE_ASSOCIATION: buc_BU448</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#abf4720e-213f-4c3d-9a97-d6ddc5a956e7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU448"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00441" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C03082" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03005" metaid="_41d3e65b-7faa-4d01-b6d9-e5b9ac95ddd4" name="ATP:nicotinamide-nucleotide adenylyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Nicotinate and nicotinamide metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.7.18</p> + <p>GENE_ASSOCIATION: buc_BU446</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_41d3e65b-7faa-4d01-b6d9-e5b9ac95ddd4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.7.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU446"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C01185" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00857" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04457" metaid="e53a3569-0b7a-4f5d-a9e5-8fd8036b88fe" name="5-amino-6-(D-ribitylamino)uracil butanedionetransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Riboflavin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.5.1.78</p> + <p>GENE_ASSOCIATION: buc_BU459</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e53a3569-0b7a-4f5d-a9e5-8fd8036b88fe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.78"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU459"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C15556" stoichiometry="1"/> + <speciesReference constant="true" species="C04732" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00001" stoichiometry="2"/> + <speciesReference constant="true" species="C04332" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02283" metaid="_56d96af9-4314-49e3-af8e-d2c985c2400c" name="N2-Acetyl-L-ornithine:2-oxoglutarate aminotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Arginine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.6.1.11</p> + <p>GENE_ASSOCIATION: buc_BU534</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_56d96af9-4314-49e3-af8e-d2c985c2400c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU534"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00026" stoichiometry="1"/> + <speciesReference constant="true" species="C00437" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + <speciesReference constant="true" species="C01250" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01073" metaid="_5496f66b-c0df-4276-b1ee-bb121c268c81" name="N-(5-Phospho-D-ribosyl)anthranilate:pyrophosphate phosphoribosyl-transferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.4.2.18</p> + <p>GENE_ASSOCIATION: buc_BU280</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5496f66b-c0df-4276-b1ee-bb121c268c81"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU280"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04302" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00108" stoichiometry="1"/> + <speciesReference constant="true" species="C00119" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02282" metaid="_4ac1058f-9a07-4bb4-9d2a-5c9b6c778b2f" name="N2-Acetyl-L-ornithine:L-glutamate N-acetyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU047</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU047"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00437" stoichiometry="1"/> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00077" stoichiometry="1"/> + <speciesReference constant="true" species="C00624" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01196" metaid="adae65c4-fa60-45c7-98bd-3f6568b4eeef" name="pyruvate:ferredoxin 2-oxidoreductase (CoA-acetylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: ( buc_BU205 ) OR ( buc_BU206 ) OR ( buc_BU207 )</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU206"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU207"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU205"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00080" stoichiometry="2"/> + <speciesReference constant="true" species="C00024" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00138" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00139" stoichiometry="2"/> + <speciesReference constant="true" species="C00022" stoichiometry="1"/> + <speciesReference constant="true" species="C00010" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01197" metaid="bf1cb97c-52ec-4bef-92c0-09d3a844e642" name="2-oxoglutarate:ferredoxin oxidoreductase (decarboxylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: ( buc_BU207 ) OR ( buc_BU302 ) OR ( buc_BU303 )</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU302"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU207"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU303"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00080" stoichiometry="2"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00091" stoichiometry="1"/> + <speciesReference constant="true" species="C00138" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00139" stoichiometry="2"/> + <speciesReference constant="true" species="C00026" stoichiometry="1"/> + <speciesReference constant="true" species="C00010" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03013" metaid="c4e80b5c-3603-476e-8b9c-54ba32b99b61" name="L-histidinol-phosphate phosphohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Histidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.1.3.15</p> + <p>GENE_ASSOCIATION: buc_BU102</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c4e80b5c-3603-476e-8b9c-54ba32b99b61"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU102"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01100" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00860" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03012" metaid="_49a6c632-e912-48d4-af8e-23947bda1342" name="L-Histidinol:NAD+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Histidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.23</p> + <p>GENE_ASSOCIATION: buc_BU100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49a6c632-e912-48d4-af8e-23947bda1342"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00860" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C01929" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01078" metaid="_751d6bba-9687-457f-9698-c34b30f0c464" name="dethiobiotin:sulfur sulfurtransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biotin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.8.1.6</p> + <p>GENE_ASSOCIATION: buc_BU291</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_751d6bba-9687-457f-9698-c34b30f0c464"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU291"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01909" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="2"/> + <speciesReference constant="true" species="C17023" stoichiometry="1"/> + <speciesReference constant="true" species="C05359" stoichiometry="2"/> + <speciesReference constant="true" species="C00019" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00120" stoichiometry="1"/> + <speciesReference constant="true" species="C00073" stoichiometry="2"/> + <speciesReference constant="true" species="C05198" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02167" metaid="_03877e56-506f-4ab2-a721-c5711020ffd2" name="D-Mannitol-1-phosphate phosphohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU572</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU572"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00644" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00392" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01070" metaid="_4beea5d6-90a5-4266-83ad-00c6ed4c226b" name="beta-D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase (glycerone-phosphate-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycolysis / Gluconeogenesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Fructose and mannose metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pentose phosphate pathway - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.1.2.13</p> + <p>GENE_ASSOCIATION: buc_BU451</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4beea5d6-90a5-4266-83ad-00c6ed4c226b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU451"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05378" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00111" stoichiometry="1"/> + <speciesReference constant="true" species="C00118" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01071" metaid="ad445ba8-4016-4a9d-bb04-0e97d895a699" name="1-(5-phospho-D-ribosyl)-ATP:diphosphate phospho-alpha-D-ribosyl-transferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Histidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.4.2.17</p> + <p>GENE_ASSOCIATION: buc_BU099</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ad445ba8-4016-4a9d-bb04-0e97d895a699"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.2.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU099"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C02739" stoichiometry="1"/> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00119" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00729" metaid="ad8542a9-c5a1-445a-9cb4-69f5f8eaa225" name="L-Tyrosine:oxygen oxidoreductase (deaminating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU101</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU101"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00007" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00082" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00014" stoichiometry="1"/> + <speciesReference constant="true" species="C00027" stoichiometry="1"/> + <speciesReference constant="true" species="C01179" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00965" metaid="a84a79af-c294-4208-901e-ed2f0709b585" name="orotidine-5'-phosphate carboxy-lyase (UMP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pyrimidine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.1.1.23</p> + <p>GENE_ASSOCIATION: buc_BU270</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a84a79af-c294-4208-901e-ed2f0709b585"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.1.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU270"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01103" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00105" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01933" metaid="_8c2aa476-bcda-463e-8996-51b1487df9d7" name="2-oxoadipate dehydrogenase complex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.2.4.2 / 1.8.1.4 / 2.3.1.61</p> + <p>GENE_ASSOCIATION: ( buc_BU207 ) OR ( buc_BU303 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8c2aa476-bcda-463e-8996-51b1487df9d7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.4.2 / 1.8.1.4 / 2.3.1.61"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU207"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU303"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + <speciesReference constant="true" species="C00322" stoichiometry="1"/> + <speciesReference constant="true" species="C00010" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00527" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05068" metaid="d1d83d41-e12f-40f2-979c-46a8dab50286" name="(R)-2,3-Dihydroxy-3-methylpentanoate:NADP+ oxidoreductase (isomerizing)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Valine, leucine and isoleucine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.86</p> + <p>GENE_ASSOCIATION: buc_BU599</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d1d83d41-e12f-40f2-979c-46a8dab50286"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.86"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU599"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C06007" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C14463" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R08218" metaid="_8fe6effa-9f37-45ba-98fb-4dac368dd13d" name="L-serine:tRNASec ligase (AMP-forming)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.11</p> + <p>GENE_ASSOCIATION: buc_BU313</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8fe6effa-9f37-45ba-98fb-4dac368dd13d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU313"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C16636" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00065" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C06481" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R08574" metaid="_6fd0a7d5-d272-4350-b23b-482172629a06" name="CTP:riboflavin 5'-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU150</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU150"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00255" stoichiometry="1"/> + <speciesReference constant="true" species="C00063" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00112" stoichiometry="1"/> + <speciesReference constant="true" species="C00061" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05069" metaid="_1733262e-ad9c-4f88-b35c-f964ae39ac43" name="(S)-2-Aceto-2-hydroxybutanoate:NADP+ oxidoreductase (isomerizing)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Valine, leucine and isoleucine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.86</p> + <p>GENE_ASSOCIATION: buc_BU599</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1733262e-ad9c-4f88-b35c-f964ae39ac43"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.86"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU599"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C06006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C14463" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R08210" metaid="fdcb5655-132b-4936-a773-e90b6ec5854c" name="dimethylallyl diphosphate:ferredoxin oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Terpenoid backbone biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.17.7.4</p> + <p>GENE_ASSOCIATION: buc_BU147</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fdcb5655-132b-4936-a773-e90b6ec5854c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.7.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU147"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00235" stoichiometry="1"/> + <speciesReference constant="true" species="C00139" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C11811" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="2"/> + <speciesReference constant="true" species="C00138" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01920" metaid="_73ff08a0-267b-4862-94c8-2a1870f9b8ad" name="S-adenosylmethioninamine:putrescine 3-aminopropyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Arginine and proline metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glutathione metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Cysteine and methionine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.5.1.16</p> + <p>GENE_ASSOCIATION: buc_BU209</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_73ff08a0-267b-4862-94c8-2a1870f9b8ad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU209"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00134" stoichiometry="1"/> + <speciesReference constant="true" species="C01137" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00170" stoichiometry="1"/> + <speciesReference constant="true" species="C00315" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R12934" metaid="ff02ed7f-7959-444f-a066-86306ea93d91" name="R12934" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biotin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.3.3</p> + <p>GENE_ASSOCIATION: buc_BU290</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ff02ed7f-7959-444f-a066-86306ea93d91"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.3.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU290"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C22458" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C01909" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R08689" metaid="_88a30b3c-6690-432d-94d0-ff1e23d7eb89" name="(E)-4-hydroxy-3-methylbut-2-en-1-yl-diphosphate:oxidized ferredoxin oxidoreductase (hydrating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Terpenoid backbone biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.17.7.1</p> + <p>GENE_ASSOCIATION: buc_BU287</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_88a30b3c-6690-432d-94d0-ff1e23d7eb89"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.7.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU287"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C11453" stoichiometry="1"/> + <speciesReference constant="true" species="C00138" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C11811" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00139" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R12933" metaid="_244bbdb6-f0f1-44ca-87f9-e8463be176af" name="R12933" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.3.3</p> + <p>GENE_ASSOCIATION: buc_BU290</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_244bbdb6-f0f1-44ca-87f9-e8463be176af"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.3.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU290"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01037" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C22458" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R10993" metaid="_75d6ad46-030a-4efe-95f9-15cbf6c07033" name="L-glutamate:2-aminobutanoate gamma-ligase (ADP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Cysteine and methionine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.2.2</p> + <p>GENE_ASSOCIATION: buc_BU407</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_75d6ad46-030a-4efe-95f9-15cbf6c07033"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU407"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C02356" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C21015" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R10994" metaid="_8709d1bd-b814-490f-b99f-e430ac3e696b" name="gamma-L-glutamyl-L-2-aminobutyrate:glycine ligase (ADP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Cysteine and methionine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.2.3</p> + <p>GENE_ASSOCIATION: buc_BU547</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8709d1bd-b814-490f-b99f-e430ac3e696b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU547"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C21015" stoichiometry="1"/> + <speciesReference constant="true" species="C00037" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C21016" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01715" metaid="abde61fd-4b9d-4d8f-ab8d-ed8ee39c88b8" name="Chorismate pyruvatemutase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 5.4.99.5</p> + <p>GENE_ASSOCIATION: buc_BU392</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#abde61fd-4b9d-4d8f-ab8d-ed8ee39c88b8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.4.99.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU392"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00251" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00254" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00508" metaid="_697a869d-b318-461b-9b5c-cee7178f60ad" name="3'-phospho-5'-adenylyl sulfate 3'-phosphohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Sulfur metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 3.1.3.7</p> + <p>GENE_ASSOCIATION: ( buc_BU422 ) OR ( buc_BU561 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_697a869d-b318-461b-9b5c-cee7178f60ad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/3.1.3.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU561"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU422"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00053" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00224" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00509" metaid="_814849a6-6123-4647-8d03-783a37479399" name="ATP:adenylylsulfate 3'-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Sulfur metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Purine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.1.25</p> + <p>GENE_ASSOCIATION: buc_BU422</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_814849a6-6123-4647-8d03-783a37479399"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.1.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU422"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00224" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00053" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00861" metaid="_5d3b7029-6795-44a5-adef-36e4a702c95a" name="hydrogen-sulfide:[DsrC sulfur-carrier protein],acceptor oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: ( buc_BU427 ) OR ( buc_BU428 )</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU427"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU428"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00028" stoichiometry="2"/> + <speciesReference constant="true" species="C00001" stoichiometry="3"/> + <speciesReference constant="true" species="C02582" stoichiometry="1"/> + <speciesReference constant="true" species="C00283" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="2"/> + <speciesReference constant="true" species="C00030" stoichiometry="2"/> + <speciesReference constant="true" species="C00094" stoichiometry="1"/> + <speciesReference constant="true" species="C02315" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01830" metaid="_53926fd3-a477-4baa-86a1-81eee7fe737c" name="beta-D-Fructose 6-phosphate:D-glyceraldehyde-3-phosphate glycolaldehyde transferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pentose phosphate pathway - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.2.1.1</p> + <p>GENE_ASSOCIATION: buc_BU094</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_53926fd3-a477-4baa-86a1-81eee7fe737c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.2.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU094"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05345" stoichiometry="1"/> + <speciesReference constant="true" species="C00118" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00231" stoichiometry="1"/> + <speciesReference constant="true" species="C00279" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00621" metaid="d6e9ac54-f056-464a-9384-17e18a473a16" name="R00621" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Citrate cycle (TCA cycle) - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.2.4.2</p> + <p>GENE_ASSOCIATION: buc_BU302</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d6e9ac54-f056-464a-9384-17e18a473a16"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.2.4.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU302"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00026" stoichiometry="1"/> + <speciesReference constant="true" species="C00068" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05381" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00985" metaid="a4260ecf-c1ce-4e28-a028-5c168d0d17d6" name="chorismate pyruvate-lyase (amino-accepting anthranilate-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.1.3.27</p> + <p>GENE_ASSOCIATION: ( buc_BUpT01 ) OR ( buc_BUpT02 ) OR ( buc_BUpT04 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a4260ecf-c1ce-4e28-a028-5c168d0d17d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BUpT04"/> + <fbc:geneProductRef fbc:geneProduct="buc_BUpT02"/> + <fbc:geneProductRef fbc:geneProduct="buc_BUpT01"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00014" stoichiometry="1"/> + <speciesReference constant="true" species="C00251" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00108" stoichiometry="1"/> + <speciesReference constant="true" species="C00022" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01954" metaid="_1a0abf4f-5ebe-4cdf-bee1-c7ff411bcd61" name="L-Citrulline:L-aspartate ligase (AMP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Arginine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Alanine, aspartate and glutamate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.4.5</p> + <p>GENE_ASSOCIATION: buc_BU050</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1a0abf4f-5ebe-4cdf-bee1-c7ff411bcd61"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.4.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00049" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00327" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C03406" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00986" metaid="_86dbab6d-067c-4d0f-bb57-5e5300580de6" name="Chorismate pyruvate-lyase (amino-accepting)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.1.3.27</p> + <p>GENE_ASSOCIATION: ( buc_BUpT01 ) OR ( buc_BUpT02 ) OR ( buc_BUpT04 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_86dbab6d-067c-4d0f-bb57-5e5300580de6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BUpT04"/> + <fbc:geneProductRef fbc:geneProduct="buc_BUpT02"/> + <fbc:geneProductRef fbc:geneProduct="buc_BUpT01"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00251" stoichiometry="1"/> + <speciesReference constant="true" species="C00064" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + <speciesReference constant="true" species="C00108" stoichiometry="1"/> + <speciesReference constant="true" species="C00022" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01714" metaid="_3eebfb25-24ef-4bbd-96d6-2451d3ae5d94" name="5-O-(1-Carboxyvinyl)-3-phosphoshikimate phosphate-lyase (chorismate-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.2.3.5</p> + <p>GENE_ASSOCIATION: buc_BU097</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3eebfb25-24ef-4bbd-96d6-2451d3ae5d94"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU097"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01269" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00251" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R08359" metaid="_5fd8100b-b731-4fb4-bfeb-459bfea2325e" name="S-adenosylmethioninamine:cadaverine 3-aminopropyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Glutathione metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.5.1.16</p> + <p>GENE_ASSOCIATION: buc_BU209</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5fd8100b-b731-4fb4-bfeb-459bfea2325e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU209"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01672" stoichiometry="1"/> + <speciesReference constant="true" species="C01137" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C16565" stoichiometry="1"/> + <speciesReference constant="true" species="C00170" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05085" metaid="c920518e-9882-4a74-8079-b2f064ccd80b" name="O-Phospho-4-hydroxy-L-threonine:2-oxoglutarate aminotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Vitamin B6 metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.6.1.52</p> + <p>GENE_ASSOCIATION: buc_BU312</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c920518e-9882-4a74-8079-b2f064ccd80b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.52"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU312"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00026" stoichiometry="1"/> + <speciesReference constant="true" species="C06055" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C06054" stoichiometry="1"/> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R12608" metaid="dcf9cb3f-3c5e-441f-a1f6-324b633166bc" name="GTP:3'-dephospho-CoA 3'-phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU203</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU203"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00882" stoichiometry="1"/> + <speciesReference constant="true" species="C00044" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00035" stoichiometry="1"/> + <speciesReference constant="true" species="C00010" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05086" metaid="_71c097da-2898-442a-b16d-87a0fee60cfa" name="O-Phospho-4-hydroxy-L-threonine phospho-lyase (adding water)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Vitamin B6 metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.2.3.1</p> + <p>GENE_ASSOCIATION: buc_BU192</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_71c097da-2898-442a-b16d-87a0fee60cfa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU192"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C06055" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C06056" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00615" metaid="b343eca8-3d3f-4eec-b29d-e4f36fac1495" name="Thiamin diphosphate phosphohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU460</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU460"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00068" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C01081" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00858" metaid="_2e43fed3-8716-4e61-ae5d-dfb2f951ca74" name="hydrogen-sulfide:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Sulfur metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.8.1.2</p> + <p>GENE_ASSOCIATION: ( buc_BU427 ) OR ( buc_BU428 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2e43fed3-8716-4e61-ae5d-dfb2f951ca74"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.8.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU427"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU428"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="3"/> + <speciesReference constant="true" species="C00006" stoichiometry="3"/> + <speciesReference constant="true" species="C00283" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00005" stoichiometry="3"/> + <speciesReference constant="true" species="C00080" stoichiometry="3"/> + <speciesReference constant="true" species="C00094" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01826" metaid="a43906ce-20d8-4a72-8b86-0203adeb7d39" name="Phosphoenolpyruvate:D-erythrose-4-phosphate C-(1-carboxyvinyl)transferase (phosphate hydrolysing, 2-carboxy-2-oxoethyl-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.5.1.54</p> + <p>GENE_ASSOCIATION: buc_BU124</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a43906ce-20d8-4a72-8b86-0203adeb7d39"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.5.1.54"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU124"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00074" stoichiometry="1"/> + <speciesReference constant="true" species="C00279" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C04691" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00616" metaid="_09f9582c-3fab-4edc-bf84-ceed5a32278e" name="ATP:thiamine-diphosphate phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU484</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU484"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00068" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C03028" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01827" metaid="_35744342-9ed0-463f-b50a-c2a556dae26b" name="sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Pentose phosphate pathway - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.2.1.2</p> + <p>GENE_ASSOCIATION: buc_BU093</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_35744342-9ed0-463f-b50a-c2a556dae26b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.2.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU093"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05382" stoichiometry="1"/> + <speciesReference constant="true" species="C00118" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05345" stoichiometry="1"/> + <speciesReference constant="true" species="C00279" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00859" metaid="bcaa8ea5-9e9d-4478-bbfc-6677b0dd190f" name="Hydrogen-sulfide:ferredoxin oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: ( buc_BU427 ) OR ( buc_BU428 )</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU427"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU428"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="3"/> + <speciesReference constant="true" species="C00139" stoichiometry="6"/> + <speciesReference constant="true" species="C00283" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00138" stoichiometry="6"/> + <speciesReference constant="true" species="C00080" stoichiometry="6"/> + <speciesReference constant="true" species="C00094" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00617" metaid="_5b2e4666-ea6e-400c-955a-fabc78aebd49" name="ATP:thiamin-phosphate phosphotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Thiamine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.7.4.16</p> + <p>GENE_ASSOCIATION: buc_BU460</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5b2e4666-ea6e-400c-955a-fabc78aebd49"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.7.4.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU460"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C01081" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00068" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00618" metaid="_4a4ebb49-4cff-4739-8964-83955499d500" name="Thiamin-triphosphate phosphohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU484</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU484"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C03028" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00068" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R01829" metaid="ae2b0fad-a87b-4705-98d1-66acb580d07e" name="sedoheptulose 1,7-bisphosphate D-glyceraldehyde-3-phosphate-lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.1.2.13</p> + <p>GENE_ASSOCIATION: buc_BU451</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ae2b0fad-a87b-4705-98d1-66acb580d07e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.1.2.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU451"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00447" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00279" stoichiometry="1"/> + <speciesReference constant="true" species="C00111" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R02918" metaid="_3f65e7ea-790a-41bd-9f03-659babee9605" name="L-Tyrosine:tRNA(Tyr) ligase (AMP-forming)" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Aminoacyl-tRNA biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.1.1.1</p> + <p>GENE_ASSOCIATION: buc_BU121</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3f65e7ea-790a-41bd-9f03-659babee9605"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.1.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU121"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00082" stoichiometry="1"/> + <speciesReference constant="true" species="C00787" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00013" stoichiometry="1"/> + <speciesReference constant="true" species="C02839" stoichiometry="1"/> + <speciesReference constant="true" species="C00020" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00734" metaid="_7d20c94f-eb94-42b3-b823-02693199e73f" name="L-tyrosine:2-oxoglutarate aminotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.6.1.9</p> + <p>GENE_ASSOCIATION: buc_BU101</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7d20c94f-eb94-42b3-b823-02693199e73f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU101"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00026" stoichiometry="1"/> + <speciesReference constant="true" species="C00082" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + <speciesReference constant="true" species="C01179" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05199" metaid="_483a2e54-8c26-4b90-85e0-4bbd4ef251a3" name="protein-N(pi)-phosphohistidine:N-acetyl-D-glucosamine 6-phosphotransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Amino sugar and nucleotide sugar metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU063</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU063"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04261" stoichiometry="1"/> + <speciesReference constant="true" species="C00140" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00615" stoichiometry="1"/> + <speciesReference constant="true" species="C00357" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05070" metaid="_800288a6-c67f-4070-b59e-71f734110f98" name="(R)-2,3-Dihydroxy-3-methylpentanoate hydro-lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Valine, leucine and isoleucine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.2.1.9</p> + <p>GENE_ASSOCIATION: buc_BU600</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_800288a6-c67f-4070-b59e-71f734110f98"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU600"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C06007" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00671" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05071" metaid="ed11e357-4d26-47a3-8759-be698cec1ea7" name="(S)-2-Acetolactate methylmutase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Valine, leucine and isoleucine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.1.1.86</p> + <p>GENE_ASSOCIATION: buc_BU599</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ed11e357-4d26-47a3-8759-be698cec1ea7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.1.1.86"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU599"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C06010" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C04181" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R08648" metaid="_86cda564-6859-4be1-a3a2-883e2a915e88" name="pyruvate:2-oxobutanoate acetaldehydetransferase (decarboxylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Valine, leucine and isoleucine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.2.1.6</p> + <p>GENE_ASSOCIATION: ( buc_BU225 ) OR ( buc_BU226 )</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_86cda564-6859-4be1-a3a2-883e2a915e88"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.2.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU225"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU226"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00022" stoichiometry="1"/> + <speciesReference constant="true" species="C00109" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C06006" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00921" metaid="_54cc9e0f-1e3b-47e9-8f3f-edbdd07b67a6" name="propanoyl-CoA:phosphate propanoyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Propanoate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.3.1.8</p> + <p>GENE_ASSOCIATION: buc_BU176</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_54cc9e0f-1e3b-47e9-8f3f-edbdd07b67a6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.3.1.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU176"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00100" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00010" stoichiometry="1"/> + <speciesReference constant="true" species="C02876" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04173" metaid="f0fddbb2-14f9-4f22-84e2-9cc5b54395f8" name="3-Phosphoserine:2-oxoglutarate aminotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Methane metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycine, serine and threonine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Cysteine and methionine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.6.1.52</p> + <p>GENE_ASSOCIATION: buc_BU312</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f0fddbb2-14f9-4f22-84e2-9cc5b54395f8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.6.1.52"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU312"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00026" stoichiometry="1"/> + <speciesReference constant="true" species="C01005" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C03232" stoichiometry="1"/> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03084" metaid="dbd46e6c-16d0-48b0-8c7f-22a16933fb29" name="3-Dehydroquinate hydro-lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.2.1.10</p> + <p>GENE_ASSOCIATION: buc_BU399</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dbd46e6c-16d0-48b0-8c7f-22a16933fb29"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU399"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00944" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C02637" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03083" metaid="_0e7a8bca-6aeb-41aa-ac5f-64dbc233cb5a" name="2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate phosphate-lyase (cyclyzing)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Phenylalanine, tyrosine and tryptophan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 4.2.3.4</p> + <p>GENE_ASSOCIATION: buc_BU538</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0e7a8bca-6aeb-41aa-ac5f-64dbc233cb5a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/4.2.3.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU538"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04691" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00944" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R06590" metaid="cf1353e9-d7da-4e66-aa3e-6a1f1fe89cdb" name="sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glycolaldehydetransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.2.1.1</p> + <p>GENE_ASSOCIATION: buc_BU094</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cf1353e9-d7da-4e66-aa3e-6a1f1fe89cdb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.2.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU094"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00117" stoichiometry="1"/> + <speciesReference constant="true" species="C12214" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C05382" stoichiometry="1"/> + <speciesReference constant="true" species="C12215" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R08645" metaid="b87a33c5-2012-44b8-a6b8-787fad0bf609" name="2-(3'-methylthio)heptylmalate hydroxymutase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BUpL06</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BUpL06"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C17230" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C17231" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05132" metaid="f707c473-5abe-42a7-b759-f47db06f1efc" name="protein-N(pi)-phosphohistidine:arbutin 6-phosphotransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Glycolysis / Gluconeogenesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU063</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU063"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04261" stoichiometry="1"/> + <speciesReference constant="true" species="C06186" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00615" stoichiometry="1"/> + <speciesReference constant="true" species="C06187" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R08641" metaid="a3798973-a630-4f6b-82ae-a7b6d338b87a" name="2-(3'-methylthio)hexylmalate hydroxymutase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: 2-Oxocarboxylic acid metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BUpL06</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BUpL06"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C17226" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C17227" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03192" metaid="_887b9ed7-0247-4f07-b9f1-610243623b31" name="UDP-N-acetylmuramate:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Amino sugar and nucleotide sugar metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Peptidoglycan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of nucleotide sugars - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.98</p> + <p>GENE_ASSOCIATION: buc_BU045</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_887b9ed7-0247-4f07-b9f1-610243623b31"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.98"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU045"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + <speciesReference constant="true" species="C01050" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C04631" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03191" metaid="b1d18ebf-c9d3-42aa-ad33-04050706fd9a" name="UDP-N-acetylmuramate:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Amino sugar and nucleotide sugar metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Peptidoglycan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.3.1.98</p> + <p>GENE_ASSOCIATION: buc_BU045</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b1d18ebf-c9d3-42aa-ad33-04050706fd9a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.3.1.98"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU045"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01050" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C04631" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03194" metaid="bb04886a-b95c-4969-92e3-fbbbfba4e8d4" name="S-adenosyl-L-methionine:uroporphyrinogen-III C-methyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Porphyrin metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.1.1.107</p> + <p>GENE_ASSOCIATION: buc_BU425</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bb04886a-b95c-4969-92e3-fbbbfba4e8d4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU425"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00019" stoichiometry="2"/> + <speciesReference constant="true" species="C01051" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C02463" stoichiometry="1"/> + <speciesReference constant="true" species="C00021" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R03193" metaid="_5215bd08-0660-4284-852e-5d8c8b199ea2" name="UDP-N-acetylmuramate:L-alanine ligase (ADP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Peptidoglycan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.2.8</p> + <p>GENE_ASSOCIATION: buc_BU215</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5215bd08-0660-4284-852e-5d8c8b199ea2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU215"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C01050" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00041" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C01212" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00945" metaid="cce27c55-c4ac-4d70-8b34-6d9a8de3956a" name="5,10-Methylenetetrahydrofolate:glycine hydroxymethyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Glyoxylate and dicarboxylate metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || One carbon pool by folate - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Methane metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum) || Glycine, serine and threonine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.1.2.1</p> + <p>GENE_ASSOCIATION: buc_BU289</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cce27c55-c4ac-4d70-8b34-6d9a8de3956a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.1.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU289"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00143" stoichiometry="1"/> + <speciesReference constant="true" species="C00037" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00101" stoichiometry="1"/> + <speciesReference constant="true" species="C00065" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00946" metaid="cbb95b23-e137-49d9-9e5f-f3ff73e5375c" name="5-methyltetrahydrofolate:L-homocysteine S-methyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU030</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00440" stoichiometry="1"/> + <speciesReference constant="true" species="C00155" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00101" stoichiometry="1"/> + <speciesReference constant="true" species="C00073" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00940" metaid="a95083f3-a79e-4466-9313-45ba78030e40" name="5,6,7,8-tetrahydrofolate:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || One carbon pool by folate - Buchnera aphidicola APS (Acyrthosiphon pisum) || Folate biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.5.1.3</p> + <p>GENE_ASSOCIATION: buc_BU143</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a95083f3-a79e-4466-9313-45ba78030e40"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU143"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00101" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="2"/> + <speciesReference constant="true" species="C00005" stoichiometry="2"/> + <speciesReference constant="true" species="C00504" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R08549" metaid="_9bc37b0b-d841-4bde-baeb-59e077aaf669" name="2-oxoglutarate:NAD+ 2-oxidoreductase (CoA-succinylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Carbon metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: ( buc_BU207 ) OR ( buc_BU302 ) OR ( buc_BU303 )</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU302"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU207"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU303"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + <speciesReference constant="true" species="C00026" stoichiometry="1"/> + <speciesReference constant="true" species="C00010" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00091" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00941" metaid="_8a3649e2-76cb-426a-8af4-2df9701ef61b" name="10-formyltetrahydrofolate:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: ( buc_BU031 ) OR ( buc_BU497 )</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU031"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU497"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + <speciesReference constant="true" species="C00234" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C00101" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00942" metaid="f5099e99-f60d-4a6b-b2c5-e74ec80e6eb0" name="Tetrahydrofolate:L-glutamate gamma-ligase (ADP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Folate biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 6.3.2.17</p> + <p>GENE_ASSOCIATION: buc_BU167</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f5099e99-f60d-4a6b-b2c5-e74ec80e6eb0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/6.3.2.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU167"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00025" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00101" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C09332" stoichiometry="1"/> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00943" metaid="_7b586e40-3e9f-49da-b2fa-83eaeb780816" name="Formate:tetrahydrofolate ligase (ADP-forming)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: ( buc_BU031 ) OR ( buc_BU497 )</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU031"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU497"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00058" stoichiometry="1"/> + <speciesReference constant="true" species="C00002" stoichiometry="1"/> + <speciesReference constant="true" species="C00101" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00008" stoichiometry="1"/> + <speciesReference constant="true" species="C00009" stoichiometry="1"/> + <speciesReference constant="true" species="C00234" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00944" metaid="_7ee64ec6-928b-4ca8-97d5-4b793a721622" name="10-Formyltetrahydrofolate amidohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: ( buc_BU031 ) OR ( buc_BU497 )</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU031"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU497"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00234" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00101" stoichiometry="1"/> + <speciesReference constant="true" species="C00058" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04198" metaid="ef218711-7532-43f9-b060-609efaf09e2f" name="2,3,4,5-tetrahydrodipicolinate:NAD+ 4-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Lysine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Monobactam biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.17.1.8</p> + <p>GENE_ASSOCIATION: buc_BU146</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ef218711-7532-43f9-b060-609efaf09e2f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.1.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU146"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C03972" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C20258" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R10866" metaid="_66f0dbdf-d7ad-47e9-b240-facc4f38fc8f" name="pyruvate:flavodoxin 2-oxidoreductase (CoA-acetylating)" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: ( buc_BU205 ) OR ( buc_BU206 ) OR ( buc_BU207 )</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="buc_BU206"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU207"/> + <fbc:geneProductRef fbc:geneProduct="buc_BU205"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C02869" stoichiometry="1"/> + <speciesReference constant="true" species="C00022" stoichiometry="1"/> + <speciesReference constant="true" species="C00010" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00024" stoichiometry="1"/> + <speciesReference constant="true" species="C00011" stoichiometry="1"/> + <speciesReference constant="true" species="C02745" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R04199" metaid="fdeacab6-a3d1-4e8b-a7cc-f8cce793500c" name="2,3,4,5-tetrahydrodipicolinate:NADP+ 4-oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Lysine biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of secondary metabolites - Buchnera aphidicola APS (Acyrthosiphon pisum) || Microbial metabolism in diverse environments - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of amino acids - Buchnera aphidicola APS (Acyrthosiphon pisum) || Monobactam biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.17.1.8</p> + <p>GENE_ASSOCIATION: buc_BU146</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fdeacab6-a3d1-4e8b-a7cc-f8cce793500c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.1.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU146"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C03972" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C20258" stoichiometry="1"/> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R09769" metaid="_503fc668-66ac-4b42-ac82-07ecc6687259" name="D-glycero-alpha-D-manno-heptose 7-phosphate aldose-ketose-isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Lipopolysaccharide biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of nucleotide sugars - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 5.3.1.28</p> + <p>GENE_ASSOCIATION: buc_BU250</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_503fc668-66ac-4b42-ac82-07ecc6687259"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.28"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C05382" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C19878" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R08559" metaid="_5eff31f9-b7b0-41be-adb2-5f0eab9844b4" name="protein-N(pi)-phosphohistidine:N-acetylmuramate 6-phosphotransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Amino sugar and nucleotide sugar metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>GENE_ASSOCIATION: buc_BU063</p> + </body> + </notes> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU063"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C04261" stoichiometry="1"/> + <speciesReference constant="true" species="C02713" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C16698" stoichiometry="1"/> + <speciesReference constant="true" species="C00615" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R07460" metaid="_15cebad5-93b2-4c11-998c-062c80f0b481" name="L-cysteine:[enzyme]-cysteine sulfurtransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Thiamine metabolism - Buchnera aphidicola APS (Acyrthosiphon pisum) || Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.8.1.7</p> + <p>GENE_ASSOCIATION: buc_BU602</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_15cebad5-93b2-4c11-998c-062c80f0b481"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.8.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU602"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C15811" stoichiometry="1"/> + <speciesReference constant="true" species="C00097" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00041" stoichiometry="1"/> + <speciesReference constant="true" species="C15812" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00936" metaid="_723ab612-cb0c-4bed-ad02-369d1df4e42e" name="5,6,7,8-tetrahydrofolate:NAD+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || One carbon pool by folate - Buchnera aphidicola APS (Acyrthosiphon pisum) || Folate biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.5.1.3</p> + <p>GENE_ASSOCIATION: buc_BU143</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_723ab612-cb0c-4bed-ad02-369d1df4e42e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU143"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00101" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00415" stoichiometry="1"/> + <speciesReference constant="true" species="C00004" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00937" metaid="_62675de1-6210-493f-9cd2-cd48edcd41e0" name="5,6,7,8-tetrahydrofolate:NAD+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || One carbon pool by folate - Buchnera aphidicola APS (Acyrthosiphon pisum) || Folate biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.5.1.3</p> + <p>GENE_ASSOCIATION: buc_BU143</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_62675de1-6210-493f-9cd2-cd48edcd41e0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU143"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00101" stoichiometry="1"/> + <speciesReference constant="true" species="C00003" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="2"/> + <speciesReference constant="true" species="C00004" stoichiometry="2"/> + <speciesReference constant="true" species="C00504" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R00939" metaid="_99af3a12-d284-4617-87b8-1c33eefe15f4" name="5,6,7,8-tetrahydrofolate:NADP+ oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || One carbon pool by folate - Buchnera aphidicola APS (Acyrthosiphon pisum) || Folate biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum) || Biosynthesis of cofactors - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.5.1.3</p> + <p>GENE_ASSOCIATION: buc_BU143</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_99af3a12-d284-4617-87b8-1c33eefe15f4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.5.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU143"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00101" stoichiometry="1"/> + <speciesReference constant="true" species="C00006" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00080" stoichiometry="1"/> + <speciesReference constant="true" species="C00005" stoichiometry="1"/> + <speciesReference constant="true" species="C00415" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R05032" metaid="e1c5ab23-36d5-427b-8f55-220d74146e1e" name="UDP-N-acetyl-D-glucosamine:undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine 4-beta-N-acetylglucosaminlytransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Peptidoglycan biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 2.4.1.227</p> + <p>GENE_ASSOCIATION: buc_BU216</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e1c5ab23-36d5-427b-8f55-220d74146e1e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/2.4.1.227"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU216"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C00043" stoichiometry="1"/> + <speciesReference constant="true" species="C05897" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C00015" stoichiometry="1"/> + <speciesReference constant="true" species="C05898" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R10859" metaid="a2dbda09-1883-4324-822d-a0f2a574c50a" name="(E)-4-hydroxy-3-methylbut-2-en-1-yl-diphosphate:oxidized flavodoxin oxidoreductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>SUBSYSTEM: Metabolic pathways - Buchnera aphidicola APS (Acyrthosiphon pisum) || Terpenoid backbone biosynthesis - Buchnera aphidicola APS (Acyrthosiphon pisum)</p> + <p>EC_NUMBER: 1.17.7.3</p> + <p>GENE_ASSOCIATION: buc_BU287</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a2dbda09-1883-4324-822d-a0f2a574c50a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="https://identifiers.org/ec-code/1.17.7.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="buc_BU287"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="C11811" stoichiometry="1"/> + <speciesReference constant="true" species="C00001" stoichiometry="1"/> + <speciesReference constant="true" species="C02869" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="C02745" stoichiometry="1"/> + <speciesReference constant="true" species="C11453" stoichiometry="1"/> + </listOfProducts> + </reaction> + </listOfReactions> + </model> +</sbml>