--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/networkAnalysis/ChokePoint/test-data/testChoke.tsv	Fri Jun 10 10:31:34 2022 +0000
@@ -0,0 +1,202 @@
+R_TREtex	trehalose_transport_via_diffusion__extracellular_to_periplasm_	R_TREtex
+R_HISDr	histidase_r	R_HISDr
+R_TTDCEAtexi	R_TTDCEAtexi	R_TTDCEAtexi
+R_ACt2rex	R_ACt2rex	R_ACt2rex
+R_GLYtex	glycine_transport_via_diffusion__extracellular_to_periplasm_	R_GLYtex
+R_G3PGtex	glycerophoglycerol_transport_via_diffusion__extracellular_to_periplasm_	R_G3PGtex
+R_X5PL3E	R_X5PL3E	R_X5PL3E
+R_ILEtex	L_isoleucine_transport_via_diffusion__extracellular_to_periplasm_	R_ILEtex
+R_PItex	phosphate_transport_via_diffusion__extracellular_to_periplasm_	R_PItex
+R_12DGR141tipp	R_12DGR141tipp	R_12DGR141tipp
+R_6PDDGLUCA	6_phospho_5_dehydro_2_deoxy_D_gluconate_aldolase	R_6PDDGLUCA
+R_ADEtex	adenine_transport_via_diffusion__extracellular_to_periplasm_	R_ADEtex
+R_DB4PS	3_4_Dihydroxy_2_butanone_4_phosphate_synthase	R_DB4PS
+R_SPMDtex	spermidine_transport_via_diffusion__extracellular_to_periplasm_	R_SPMDtex
+R_TSULtex	thiosulfate_transport_via_diffusion__extracellular_to_periplasm_	R_TSULtex
+R_FE3tex	iron__III__transport_via_diffusion__extracellular_to_periplasm_	R_FE3tex
+R_TRPS3r	R_TRPS3r	R_TRPS3r
+R_GUAtpp	R_GUAtpp	R_GUAtpp
+R_PROtex	L_proline_transport_via_diffusion__extracellular_to_periplasm_	R_PROtex
+R_CO2tex	CO2_transport_via_diffusion__extracellular_to_periplasm_	R_CO2tex
+R_COBALT2tex	cobalt__Co_2__transport_via_diffusion__extracellular_to_periplasm_	R_COBALT2tex
+R_HDCEAtexi	R_HDCEAtexi	R_HDCEAtexi
+R_MSO3tex	methanesulfonate_transport_via_diffusion__extracellular_to_periplasm_	R_MSO3tex
+R_GLYCLTt4ex	R_GLYCLTt4ex	R_GLYCLTt4ex
+R_G3PEtex	glycero_3_phosphoethanolamine_transport_via_diffusion__extracellular_to_periplasm_	R_G3PEtex
+R_MCTP1App	murein_crosslinking_transpeptidase_1A__A2pm__D_ala___periplasm_	R_MCTP1App
+R_OMMBLHX	2_Octaprenyl_3_methyl_6_methoxy_1_4_benzoquinol_hydroxylase	R_OMMBLHX
+R_VALtex	L_valine_transport_via_diffusion__extracellular_to_periplasm_	R_VALtex
+R_OAAtex	R_OAAtex	R_OAAtex
+R_GLNtex	L_glutamine_transport_via_diffusion__extracellular_to_periplasm_	R_GLNtex
+R_12DGR180tipp	R_12DGR180tipp	R_12DGR180tipp
+R_PMANM	phosphomannomutase	R_PMANM
+R_PPM	R_PPM	R_PPM
+R_NACtex	Nicotinic_acid_transport_via_diffusion__extracellular_to_periplasm_	R_NACtex
+R_GLYC2Ptex	sn_Glycerol_2_phosphate_transport_via_diffusion__extracellular_to_periplasm_	R_GLYC2Ptex
+R_UREAtpp	Urea_transport_via_facilitate_diffusion__periplasm_	R_UREAtpp
+R_CA2tex	R_CA2tex	R_CA2tex
+R_MCTP1Bpp	murein_crosslinking_transpeptidase_1B__A2pm__A2pm___periplasm_	R_MCTP1Bpp
+R_H2Stex	Hydrogen_sulfide_transport_via_diffusion__extracellular_to_periplasm_	R_H2Stex
+R_GLYCt	R_GLYCt	R_GLYCt
+R_ZN2tex	R_ZN2tex	R_ZN2tex
+R_dextrin_DEC_e_	R_dextrin_DEC_e_	R_dextrin_DEC_e_
+R_H2tex	R_H2tex	R_H2tex
+R_PYRt2rtex	R_PYRt2rtex	R_PYRt2rtex
+R_AIRC3	phosphoribosylaminoimidazole_carboxylase__mutase_rxn_	R_AIRC3
+R_TTDCAtex	Tetradecanoate_transport_via_diffusion__extracellular_to_periplasm_	R_TTDCAtex
+R_CLPNS181pp	cardiolipin_synthase__periplasmic__n_C18_1_	R_CLPNS181pp
+R_HYXNtex	Hypoxanthine_transport_via_diffusion__extracellular_to_periplasm_	R_HYXNtex
+R_INSDH	2_keto_myo_inositol_dehydratase	R_INSDH
+R_OTOTt2_2tex	R_OTOTt2_2tex	R_OTOTt2_2tex
+R_TDPGDH	dTDPglucose_4_6_dehydratase	R_TDPGDH
+R_DHNPTE	R_DHNPTE	R_DHNPTE
+R_3HPPtex	3_hydroxypropionate_transport_via_diffusion__extracellular_to_periplasm_	R_3HPPtex
+R_SULtex	R_SULtex	R_SULtex
+R_INSTtex	inositol_transport_via_diffusion__extracellular_to_periplasm_	R_INSTtex
+R_MTRI	R_MTRI	R_MTRI
+R_Bztpp	R_Bztpp	R_Bztpp
+R_H2tpp	R_H2tpp	R_H2tpp
+R_SERtex	L_serine_transport_via_diffusion__extracellular_to_periplasm_	R_SERtex
+R_CD2tex	cadmium__Cd_2__transport_via_diffusion__extracellular_to_periplasm_	R_CD2tex
+R_CHTNtex	R_CHTNtex	R_CHTNtex
+R_XYLtex	R_XYLtex	R_XYLtex
+R_MPTG	murein_polymerizing_transglycosylase	R_MPTG
+R_MECDPS	2_C_methyl_D_erythritol_2_4_cyclodiphosphate_synthase	R_MECDPS
+R_12DGR161tipp	R_12DGR161tipp	R_12DGR161tipp
+R_SLNTtex	R_SLNTtex	R_SLNTtex
+R_G3PCtex	glycero_3_phosphocholine_transport_via_diffusion__extracellular_to_periplasm_	R_G3PCtex
+R_3HAD60	3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C6_0_	R_3HAD60
+R_CLPNS141pp	cardiolipin_synthase__periplasmic__n_C14_1_	R_CLPNS141pp
+R_XYLI1	R_XYLI1	R_XYLI1
+R_3HAD120	3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C12_0_	R_3HAD120
+R_MEOHtex	Methanol_transport_via_diffusion__extracellular_to_periplasm_	R_MEOHtex
+R_Htex	proton_transport_via_diffusion__extracellular_to_periplasm_	R_Htex
+R_H2O2tex	hydrogen_peroxide_transport_via_diffusion__extracellular_to_periplasm_	R_H2O2tex
+R_Kt2tex	R_Kt2tex	R_Kt2tex
+R_3HAD141	3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C14_1_	R_3HAD141
+R_PRAMPC	phosphoribosyl_AMP_cyclohydrolase	R_PRAMPC
+R_NOtpp	NO_transport__diffusion_	R_NOtpp
+R_12DGR140tipp	R_12DGR140tipp	R_12DGR140tipp
+R_QUIN2tex	R_QUIN2tex	R_QUIN2tex
+R_SO3tex	R_SO3tex	R_SO3tex
+R_G3PItex	glycero_3_phospho_1_inositol_transport_via_diffusion__extracellular_to_periplasm_	R_G3PItex
+R_ABUTtex	4_aminobutyrate_transport_via_diffusion__extracellular_to_periplasm_	R_ABUTtex
+R_3HAD161	3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C16_1_	R_3HAD161
+R_CHTNA2	R_CHTNA2	R_CHTNA2
+R_FRUtex	D_fructose_transport_via_diffusion__extracellular_to_periplasm_	R_FRUtex
+R_MCTP2App	murein_crosslinking_transpeptidase_1A__A2pm__D_ala___periplasm_	R_MCTP2App
+R_MOBDtex	molybdate_transport_via_diffusion__extracellular_to_periplasm_	R_MOBDtex
+R_CLPNS180pp	cardiolipin_synthase__periplasmic__n_C18_0_	R_CLPNS180pp
+R_FUMt2_2tex	R_FUMt2_2tex	R_FUMt2_2tex
+R_TDPDRE	dTDP_4_dehydrorhamnose_3_5_epimerase	R_TDPDRE
+R_UPP3S	uroporphyrinogen_III_synthase	R_UPP3S
+R_GLUtex	L_glutamate_transport_via_diffusion__extracellular_to_periplasm_	R_GLUtex
+R_MICITDr	2_methylisocitrate_dehydratase	R_MICITDr
+R_O2tex	oxygen_transport_via_diffusion__extracellular_to_periplasm_	R_O2tex
+R_CYSDtex	R_CYSDtex	R_CYSDtex
+R_EPStexXF	R_EPStexXF	R_EPStexXF
+R_MEOHtrpp	Methanol_reversible_transport_via_diffusion__periplasm_	R_MEOHtrpp
+R_UDCPPtppi	undecaprenyl_phosphate_transport__cytoplasm_to_periplasm_	R_UDCPPtppi
+R_THYMtex	R_THYMtex	R_THYMtex
+R_DAPE	diaminopimelate_epimerase	R_DAPE
+R_ORNtex	ornithine_transport_via_diffusion__extracellular_to_periplasm_	R_ORNtex
+R_NH4tex	ammonia_transport_via_diffusion__extracellular_to_periplasm_	R_NH4tex
+R_METSOX2tex	R_METSOX2tex	R_METSOX2tex
+R_MDRPDr	R_MDRPDr	R_MDRPDr
+R_12DGR181tipp	R_12DGR181tipp	R_12DGR181tipp
+R_ADCL	R_ADCL	R_ADCL
+R_MANtex	R_MANtex	R_MANtex
+R_ASPt2_2tex	R_ASPt2_2tex	R_ASPt2_2tex
+R_PRAI	phosphoribosylanthranilate_isomerase	R_PRAI
+R_NH3c	R_NH3c	R_NH3c
+R_HYXNtpp	R_HYXNtpp	R_HYXNtpp
+R_CA2tpp	R_CA2tpp	R_CA2tpp
+R_CYStex	L_cysteine_transport_via_diffusion__extracellular_to_periplasm_	R_CYStex
+R_G1SAT	glutamate_1_semialdehyde_aminotransferase	R_G1SAT
+R_PTRCtex	putrescine_transport_via_diffusion__extracellular_to_periplasm_	R_PTRCtex
+R_HIStex	L_histidine_transport_via_diffusion__extracellular_to_periplasm_	R_HIStex
+R_CU2tex	copper__Cu_2__transport_via_diffusion__extracellular_to_periplasm_	R_CU2tex
+R_OPMEACPD	3_Oxo_pimeloyl__ACP__methyl_ester_dehydratase	R_OPMEACPD
+R_PPBNGS	porphobilinogen_synthase	R_PPBNGS
+R_ARGtex	L_arginine_transport_via_diffusion__extracellular_to_periplasm_	R_ARGtex
+R_PRMICI	1__5_phosphoribosyl__5___5_phosphoribosylamino_methylideneamino_imidazole_4_carboxamide_isomerase	R_PRMICI
+R_THBPTD	R_THBPTD	R_THBPTD
+R_ACALDtex	R_ACALDtex	R_ACALDtex
+R_G3PStex	glycerophosphserine_transport_via_diffusion__extracellular_to_periplasm_	R_G3PStex
+R_3HAD140	3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C14_0_	R_3HAD140
+R_T2DECAI	trans_2_decenoyl_ACP_isomerase	R_T2DECAI
+R_METSOX1tex	R_METSOX1tex	R_METSOX1tex
+R_CLPNS120pp	cardiolipin_synthase__periplasmic__n_C12_0_	R_CLPNS120pp
+R_DDCAtex	Fatty_acid__dodecanoate__transport_via_diffusion__extracellular_to_periplasm_	R_DDCAtex
+R_FUCtex	R_FUCtex	R_FUCtex
+R_LEUtex	L_leucine_transport_via_diffusion__extracellular_to_periplasm_	R_LEUtex
+R_FORtppi	formate_transport_via_diffusion__cytoplasm_to_periplasm_	R_FORtppi
+R_CHORM	chorismate_mutase	R_CHORM
+R_3HAD121	3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C12_1_	R_3HAD121
+R_GLYALDtex	R_GLYALDtex	R_GLYALDtex
+R_RIBtex	R_RIBtex	R_RIBtex
+R_OMPHHX	2_octaprenyl_6_methoxyphenol_hydroxylase	R_OMPHHX
+R_URAtex	R_URAtex	R_URAtex
+R_CITt3tex	R_CITt3tex	R_CITt3tex
+R_3HAD40	3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C4_0_	R_3HAD40
+R_NO3tex	nitrate_transport_via_diffusion__extracellular_to_periplasm_	R_NO3tex
+R_MG2tex	magnesium__Mg_2__transport_via_diffusion__extracellular_to_periplasm_	R_MG2tex
+R_NI2t3tex	R_NI2t3tex	R_NI2t3tex
+R_GLYALDtpp	R_GLYALDtpp	R_GLYALDtpp
+R_GLUR	glutamate_racemase	R_GLUR
+R_HCO3tex	R_HCO3tex	R_HCO3tex
+R_3HAD180	3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C18_0_	R_3HAD180
+R_UDCPDPtppi	R_UDCPDPtppi	R_UDCPDPtppi
+R_OGMEACPD	3_Oxo_glutaryl__ACP__methyl_ester_dehydratase	R_OGMEACPD
+R_CLtex	chloride__Cl_1__transport_via_diffusion__extracellular_to_periplasm_	R_CLtex
+R_GLCGSD_c	R_GLCGSD_c	R_GLCGSD_c
+R_AKGt2rtex	R_AKGt2rtex	R_AKGt2rtex
+R_14GLUCANtex	R_14GLUCANtex	R_14GLUCANtex
+R_St	R_St	R_St
+R_OPHHX	2_Octaprenylphenol_hydroxylase	R_OPHHX
+R_CU2_bd_CopA	Copper_sequestration_by_cop_system	R_CU2_bd_CopA
+R_METDtex	R_METDtex	R_METDtex
+R_NOtex	nitric_oxide_transport_via_diffusion__extracellular_to_periplasm_	R_NOtex
+R_OCDCAtexi	R_OCDCAtexi	R_OCDCAtexi
+R_DGLUISO	5_deoxy_D_glucuronic_acid_isomerase	R_DGLUISO
+R_CHRPL	Chorismate_pyruvate_lyase	R_CHRPL
+R_HDCAtex	Hexadecanoate_transport_via_diffusion__extracellular_to_periplasm_	R_HDCAtex
+R_CU2tpp	copper_transport_in_via_permease__no_H__	R_CU2tpp
+R_ADNtex	Adenosine_transport_via_diffusion__extracellular_to_periplasm_	R_ADNtex
+R_GLYC3Ptex	sn_Glycerol_3_phosphate_transport_via_diffusion__extracellular_to_periplasm_	R_GLYC3Ptex
+R_A5PISO	arabinose_5_phosphate_isomerase	R_A5PISO
+R_OCDCEAtexi	R_OCDCEAtexi	R_OCDCEAtexi
+R_GUAtex	R_GUAtex	R_GUAtex
+R_METtex	L_methionine_transport_via_diffusion__extracellular_to_periplasm_	R_METtex
+R_3HAD80	3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C8_0_	R_3HAD80
+R_GMAND	GDP_D_mannose_dehydratase	R_GMAND
+R_12DGR120tipp	R_12DGR120tipp	R_12DGR120tipp
+R_Mntex	R_Mntex	R_Mntex
+R_CLPNS140pp	cardiolipin_synthase__periplasmic__n_C14_0_	R_CLPNS140pp
+R_RBFSb	riboflavin_synthase	R_RBFSb
+R_EPStppXF	R_EPStppXF	R_EPStppXF
+R_QUIN2tpp	R_QUIN2tpp	R_QUIN2tpp
+R_MLDEP1pp	murein_L_D_endopeptidase__murein3px3p___periplasm_	R_MLDEP1pp
+R_MALDt2_2tex	R_MALDt2_2tex	R_MALDt2_2tex
+R_CLPNS161pp	cardiolipin_synthase__periplasmic__n_C16_1_	R_CLPNS161pp
+R_Bztex	R_Bztex	R_Bztex
+R_NMNtex	R_NMNtex	R_NMNtex
+R_FE2tex	iron__II__transport_via_diffusion__extracellular_to_periplasm_	R_FE2tex
+R_3HAD181	3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C18_1_	R_3HAD181
+R_DAPtex	R_DAPtex	R_DAPtex
+R_GAMtex	R_GAMtex	R_GAMtex
+R_PHEMEtiex	R_PHEMEtiex	R_PHEMEtiex
+R_UDPGLCUR4EP	R_UDPGLCUR4EP	R_UDPGLCUR4EP
+R_FORtex	formate_transport_via_diffusion__extracellular_to_periplasm_	R_FORtex
+R_BTNt2tex	R_BTNt2tex	R_BTNt2tex
+R_3HAD160	3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C16_0_	R_3HAD160
+R_RBP4E	R_RBP4E	R_RBP4E
+R_THRtex	L_threonine_transport_via_diffusion__extracellular_to_periplasm_	R_THRtex
+R_INDOLEtex	R_INDOLEtex	R_INDOLEtex
+R_12DGR160tipp	R_12DGR160tipp	R_12DGR160tipp
+R_PGAMT	phosphoglucosamine_mutase	R_PGAMT
+R_CLPNS160pp	cardiolipin_synthase__periplasmic__n_C16_0_	R_CLPNS160pp
+R_DHNPA2	dihydroneopterin_aldolase	R_DHNPA2
+R_CLtpp	R_CLtpp	R_CLtpp
+R_ALAt2tex	R_ALAt2tex	R_ALAt2tex
+R_ETOHtrpp	R_ETOHtrpp	R_ETOHtrpp