--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/networkAnalysis/NetworkSummary/NetworkSummary.xml	Fri Jun 10 10:31:34 2022 +0000
@@ -0,0 +1,35 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<tool id="met4j_NetworkSummary" name="NetworkSummary" version="0.11.0">
+  <description>Create a report summarizing several graph measures characterising the structure of the network.</description>
+  <xrefs>
+    <xref type="bio.tools">met4j</xref>
+  </xrefs>
+  <requirements>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.11.0</container>
+  </requirements>
+  <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.NetworkSummary -i "$inputPath"
+#if str($sideCompoundFile) != 'None':
+ -s "$sideCompoundFile"
+#end if
+ $skipdist
+ $directed
+ -o "$outputPath"
+]]></command>
+  <inputs>
+    <param argument="-i" format="sbml" label="input SBML file" name="inputPath" optional="false" type="data" value=""/>
+    <param argument="-s" format="" label="an optional file containing list of side compounds to ignore (recommended)" name="sideCompoundFile" optional="true" type="data" value=""/>
+    <param argument="-sd" checked="false" falsevalue="" label="skip full distance matrix computation (quick summary)" name="skipdist" truevalue="-sd" type="boolean" value="false"/>
+    <param argument="-d" checked="false" falsevalue="" label="use reaction direction for distances" name="directed" truevalue="-d" type="boolean" value="false"/>
+  </inputs>
+  <outputs>
+    <data format="" name="outputPath"/>
+  </outputs>
+  <tests>
+    <test>
+      <param name="inputPath" value="toy_model.xml"/>
+      <output name="outputPath">
+      </output>
+    </test>
+  </tests>
+  <help><![CDATA[Use a metabolic network in SBML file and an optional list of side compounds, and produce a report summarizing several graph measures characterising the structure of the network.This includes (non-exhaustive list): size and order, connectivity, density, degree distribution, shortest paths length, top centrality nodes...]]></help>
+</tool>