Mercurial > repos > metexplore > met4j
diff tools/attributes/SbmlSetPathwaysFromFile/SbmlSetPathwaysFromFile.xml @ 2:e69a78624877 draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit cb957f5d5540a48293fe8487c0cfad78ab439d7c
author | metexplore |
---|---|
date | Tue, 19 Jul 2022 14:20:07 +0000 |
parents | 9b162ee6ff8e |
children | 6bd9aad9626d |
line wrap: on
line diff
--- a/tools/attributes/SbmlSetPathwaysFromFile/SbmlSetPathwaysFromFile.xml Mon Jun 27 13:41:08 2022 +0000 +++ b/tools/attributes/SbmlSetPathwaysFromFile/SbmlSetPathwaysFromFile.xml Tue Jul 19 14:20:07 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_SbmlSetPathwaysFromFile" name="SbmlSetPathwaysFromFile" version="0.12.0"> +<tool id="met4j_SbmlSetPathwaysFromFile" name="SbmlSetPathwaysFromFile" version="1.0.1"> <description>Set pathway to reactions in a network from a tabulated file containing the reaction ids and the pathways</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.12.0</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.SbmlSetPathwaysFromFile#if str($colp) != 'nan': -cp "$colp" @@ -62,9 +62,9 @@ <assert_contents> <is_valid_xml/> <has_line_matching expression=".*groups:id=.*" n="3"/> - <has_line_matching expression=".*groups:id=.P1.*" n="1"/> - <has_line_matching expression=".*groups:id=.P2.*" n="1"/> - <has_line_matching expression=".*groups:id=.P3.*" n="1"/> + <has_line_matching expression=".*groups:id=.p1.*" n="1"/> + <has_line_matching expression=".*groups:id=.p2.*" n="1"/> + <has_line_matching expression=".*groups:id=.p3.*" n="1"/> </assert_contents> </output> </test> @@ -76,9 +76,9 @@ <assert_contents> <is_valid_xml/> <has_line_matching expression=".*groups:id=.*" n="3"/> - <has_line_matching expression=".*groups:id=.P1.*" n="1"/> - <has_line_matching expression=".*groups:id=.P2.*" n="1"/> - <has_line_matching expression=".*groups:id=.P3.*" n="1"/> + <has_line_matching expression=".*groups:id=.p1.*" n="1"/> + <has_line_matching expression=".*groups:id=.p2.*" n="1"/> + <has_line_matching expression=".*groups:id=.p3.*" n="1"/> </assert_contents> </output> </test>