Mercurial > repos > metexplore > met4j
diff tools/convert/Tab2Sbml/Tab2Sbml.xml @ 2:e69a78624877 draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit cb957f5d5540a48293fe8487c0cfad78ab439d7c
author | metexplore |
---|---|
date | Tue, 19 Jul 2022 14:20:07 +0000 |
parents | 9b162ee6ff8e |
children | 6bd9aad9626d |
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--- a/tools/convert/Tab2Sbml/Tab2Sbml.xml Mon Jun 27 13:41:08 2022 +0000 +++ b/tools/convert/Tab2Sbml/Tab2Sbml.xml Tue Jul 19 14:20:07 2022 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_Tab2Sbml" name="Tab2Sbml" version="0.12.0"> +<tool id="met4j_Tab2Sbml" name="Tab2Sbml" version="1.0.1"> <description>Create a Sbml File from a tabulated file that contains the reaction ids and the formulas</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.12.0</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.Tab2Sbml#if str($colid) != 'nan': -ci "$colid" @@ -24,9 +24,7 @@ #if str($r): -r "$r" #end if -#if str($in) != 'None': -in "$in" -#end if #if str($id): -id "$id" #end if @@ -59,7 +57,7 @@ <valid initial="string.printable"/> </sanitizer> </param> - <param argument="-in" format="tsv" label="Tabulated file" name="in" optional="true" type="data" value=""/> + <param argument="-in" format="tsv" label="Tabulated file" name="in" optional="false" type="data" value=""/> <param argument="-id" label="[NA] Model id written in the SBML file" name="id" optional="true" type="text" value="NA"> <sanitizer invalid_char="_"> <valid initial="string.printable"/>