diff tools/convert/Tab2Sbml/Tab2Sbml.xml @ 2:e69a78624877 draft

planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit cb957f5d5540a48293fe8487c0cfad78ab439d7c
author metexplore
date Tue, 19 Jul 2022 14:20:07 +0000
parents 9b162ee6ff8e
children 6bd9aad9626d
line wrap: on
line diff
--- a/tools/convert/Tab2Sbml/Tab2Sbml.xml	Mon Jun 27 13:41:08 2022 +0000
+++ b/tools/convert/Tab2Sbml/Tab2Sbml.xml	Tue Jul 19 14:20:07 2022 +0000
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<tool id="met4j_Tab2Sbml" name="Tab2Sbml" version="0.12.0">
+<tool id="met4j_Tab2Sbml" name="Tab2Sbml" version="1.0.1">
   <description>Create a Sbml File from a tabulated file that contains the reaction ids and the formulas</description>
   <xrefs>
     <xref type="bio.tools">met4j</xref>
   </xrefs>
   <requirements>
-    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.12.0</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.Tab2Sbml#if str($colid) != 'nan':
  -ci "$colid"
@@ -24,9 +24,7 @@
 #if str($r):
  -r "$r"
 #end if
-#if str($in) != 'None':
  -in "$in"
-#end if
 #if str($id):
  -id "$id"
 #end if
@@ -59,7 +57,7 @@
         <valid initial="string.printable"/>
       </sanitizer>
     </param>
-    <param argument="-in" format="tsv" label="Tabulated file" name="in" optional="true" type="data" value=""/>
+    <param argument="-in" format="tsv" label="Tabulated file" name="in" optional="false" type="data" value=""/>
     <param argument="-id" label="[NA] Model id written in the SBML file" name="id" optional="true" type="text" value="NA">
       <sanitizer invalid_char="_">
         <valid initial="string.printable"/>