diff build/tools/CreateMetaNetwork/CreateMetaNetwork.xml @ 11:40c15b7467f1 draft default tip

planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 61dbdbae896d18b519a470e056cb8b4f98394518
author metexplore
date Thu, 13 Feb 2025 15:08:22 +0000
parents 6a112eaf8f38
children
line wrap: on
line diff
--- a/build/tools/CreateMetaNetwork/CreateMetaNetwork.xml	Mon Feb 03 15:59:46 2025 +0000
+++ b/build/tools/CreateMetaNetwork/CreateMetaNetwork.xml	Thu Feb 13 15:08:22 2025 +0000
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<tool id="met4j_CreateMetaNetwork" name="CreateMetaNetwork" version="2.0.0">
+<tool id="met4j_CreateMetaNetwork" name="CreateMetaNetwork" version="2.0.1">
   <description>Create a Meta-Network from two sub-networks in SBML format.</description>
   <xrefs>
     <xref type="bio.tools">met4j</xref>
   </xrefs>
   <requirements>
-    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:2.0.0</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:2.0.1</container>
   </requirements>
   <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh reconstruction.CreateMetaNetwork -n1 "$sbml1FilePath"
  -n2 "$sbml2FilePath"
@@ -60,18 +60,31 @@
   </outputs>
   <tests>
     <test>
+            
       <param name="sbml1FilePath" value="Human-GEM_pathways.xml"/>
+            
       <param name="sbml2FilePath" value="ECOL.xml"/>
+            
       <param name="external1" value="s"/>
+            
       <param name="external2" value="e"/>
+            
       <param name="n1prefix" value="hsa"/>
+            
       <param name="n2prefix" value="eco"/>
+            
       <param name="mergingCriterion" value="by_metanetx"/>
+            
       <output ftype="sbml" name="outputPath">
+                
         <assert_contents>
+                    
           <has_text text="&lt;/sbml&gt;"/>
+                  
         </assert_contents>
+              
       </output>
+          
     </test>
   </tests>
   <help><![CDATA[Create a Meta-Network from two sub-networks in SBML format.