Mercurial > repos > metexplore > met4j
diff build/tools/NameMatcher/NameMatcher.xml @ 8:1274e2a62479 draft default tip
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit e34acf0f51cafcf6ae7c97b4feb3188a39f17c32
author | metexplore |
---|---|
date | Wed, 26 Jul 2023 15:33:45 +0000 |
parents | 1436e9cde9c9 |
children |
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--- a/build/tools/NameMatcher/NameMatcher.xml Tue Jul 04 10:21:26 2023 +0000 +++ b/build/tools/NameMatcher/NameMatcher.xml Wed Jul 26 15:33:45 2023 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="met4j_NameMatcher" name="NameMatcher" version="1.4.0"> +<tool id="met4j_NameMatcher" name="NameMatcher" version="1.5.0"> <description>This tool runs edit-distance based fuzzy matching to perform near-similar name matching between a metabolic model and a list of chemical names in a dataset. A harmonization processing is performed on chemical names with substitutions of common patterns among synonyms, in order to create aliases on which classical fuzzy matching can be run efficiently.</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.4.0</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.5.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh mapping.NameMatcher#if str($n): -nMatch "$n"