Mercurial > repos > metexplore > met4j
diff tools/bigg/GetBiggModelProteome/GetBiggModelProteome.xml @ 11:40c15b7467f1 draft default tip
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 61dbdbae896d18b519a470e056cb8b4f98394518
author | metexplore |
---|---|
date | Thu, 13 Feb 2025 15:08:22 +0000 |
parents | 6a112eaf8f38 |
children |
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--- a/tools/bigg/GetBiggModelProteome/GetBiggModelProteome.xml Mon Feb 03 15:59:46 2025 +0000 +++ b/tools/bigg/GetBiggModelProteome/GetBiggModelProteome.xml Thu Feb 13 15:08:22 2025 +0000 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8" standalone="no"?> -<tool id="met4j_GetBiggModelProteome" name="GetBiggModelProteome" version="2.0.0"> +<tool id="met4j_GetBiggModelProteome" name="GetBiggModelProteome" version="2.0.1"> <description>Get proteome in fasta format of a model present in the BIGG database</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> - <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:2.0.0</container> + <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:2.0.1</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh bigg.GetBiggModelProteome -m "$modelId" -o "$outputFile" @@ -22,12 +22,19 @@ </outputs> <tests> <test maxseconds="120"> + <param name="modelId" value="e_coli_core"/> + <output ftype="fasta" name="outputFile"> + <assert_contents> + <has_line_matching expression=".*name=.*" n="136"/> + </assert_contents> + </output> + </test> </tests> <help><![CDATA[Get proteome in fasta format of a model present in the BIGG database]]></help>