Mercurial > repos > metexplore > met4j
view tools/attributes/SbmlToMetaboliteTable/SbmlToMetaboliteTable.xml @ 0:dcd16521b969 draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 5dab0a2d83a1fdd7a1878a50ba0f24e752505393
author | metexplore |
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date | Fri, 10 Jun 2022 10:31:34 +0000 |
parents | |
children | 9b162ee6ff8e |
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<?xml version="1.0" encoding="UTF-8"?> <tool id="met4j_SbmlToMetaboliteTable" name="SbmlToMetaboliteTable" version="0.11.0"> <description>Create a tabulated file with metabolite attributes from a SBML file</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:0.11.0</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.SbmlToMetaboliteTable -s "$sbml" -o "$outputFile" ]]></command> <inputs> <param argument="-s" format="sbml" label="Sbml file" name="sbml" optional="false" type="data" value=""/> </inputs> <outputs> <data format="tsv" name="outputFile"/> </outputs> <tests> <test> <param name="sbml" value="toy_model.xml"/> <output ftype="tsv" name="outputFile"> <assert_contents> <has_n_lines n="9"/> <has_n_columns n="6"/> <has_line_matching expression=".*1S/C2H6O/c1-2-3/h3H,2H2,1H3.*" n="1"/> <has_line_matching expression=".*C.*NC.*" n="1"/> </assert_contents> </output> </test> </tests> <help><![CDATA[Create a tabulated file with metabolite attributes from a SBML file]]></help> </tool>