Mercurial > repos > metexplore > met4j
view tools/attributes/SbmlSetNamesFromFile/test-data/XF_network.sbml @ 2:e69a78624877 draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit cb957f5d5540a48293fe8487c0cfad78ab439d7c
author | metexplore |
---|---|
date | Tue, 19 Jul 2022 14:20:07 +0000 |
parents | dcd16521b969 |
children |
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<groups:member groups:idRef="R_MTAP"/> </groups:listOfMembers> </groups:group> </groups:listOfGroups> <listOfUnitDefinitions> <unitDefinition id="mmol_per_gDW_per_hr" name="mmol_per_gDW_per_hr"> <listOfUnits> <unit exponent="-1" kind="gram" multiplier="1" scale="0"/> <unit exponent="1" kind="mole" multiplier="1" scale="-3"/> <unit exponent="-1" kind="second" multiplier="0.00027777" scale="0"/> </listOfUnits> </unitDefinition> </listOfUnitDefinitions> <listOfCompartments> <compartment constant="false" id="p" metaid="_43be7dad-5b92-450e-be6a-a69cbf6b295d" name="p" spatialDimensions="3"/> <compartment constant="false" id="c" metaid="_37f973ef-d0be-4203-9777-e037f1222d90" name="c" spatialDimensions="3"/> <compartment constant="false" id="e" metaid="b4d9b2bb-d72a-4183-9081-ce1b23ce885c" name="e" spatialDimensions="3"/> </listOfCompartments> <listOfSpecies> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H29O2" 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id="M_trnaasp_c" metaid="_81402407-ed90-4c32-b133-7c1b5a2e1a6e" name="tRNA_Asp_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Ni" hasOnlySubstanceUnits="true" id="M_ni2_p" metaid="c63ab7cd-3059-44f4-ae8f-9b967625ebca" name="nickel" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Ni</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H74N1O8P1" hasOnlySubstanceUnits="true" id="M_pe160_c" metaid="_59c509d6-1751-4e87-b01c-14cf34ac9b4c" name="phosphatidylethanolamine__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C37H74N1O8P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" 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sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C77H117N15O40</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10O3" hasOnlySubstanceUnits="true" id="M_dmoxpol_c" metaid="beb0eb5d-519f-4b06-8171-7dc4a7d1af7b" name="Dimethoxyphenol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H10O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H74N1O8P1" hasOnlySubstanceUnits="true" id="M_pe160_p" metaid="a44dcca2-66e7-44ae-9186-978f6b1542ba" name="phosphatidylethanolamine__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C37H74N1O8P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Ni" hasOnlySubstanceUnits="true" id="M_ni2_e" metaid="_6949f66e-e627-4fdb-9009-56246e4dc4b0" name="nickel" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Ni</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Ni" hasOnlySubstanceUnits="true" id="M_ni2_c" metaid="_40131acb-4ecf-4acd-af9c-91224f8e4960" name="nickel" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Ni</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9O6" hasOnlySubstanceUnits="true" id="M_3dhq_c" metaid="_89b598af-c5d9-4d78-a32f-886d14936013" name="3_Dehydroquinate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H9O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11N3O4P" hasOnlySubstanceUnits="true" id="M_hisp_c" metaid="_406b497f-432f-4b2b-a34a-075cb4a46571" name="L_Histidinol_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H11N3O4P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O4" hasOnlySubstanceUnits="true" id="M_23dhmb_c" metaid="_07921bfa-da8f-4679-84dc-9765988d4938" name="R__2_3_Dihydroxy_3_methylbutanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H9O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N4O9P" hasOnlySubstanceUnits="true" id="M_fprica_c" metaid="_72798c59-4852-475e-a2d5-2e972bc9ac1c" name="5_Formamido_1__5_phospho_D_ribosyl_imidazole_4_carboxamide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H13N4O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15O2" hasOnlySubstanceUnits="true" id="M_octa_p" metaid="_30c3518e-a938-43f3-9051-a3e711f90b51" name="octanoate__n_C8_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H15O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H65N1O10P1" hasOnlySubstanceUnits="true" id="M_ps140_c" metaid="_3aa73b52-633a-48e2-b679-62294e71a142" name="phosphatidylserine__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C34H65N1O10P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_man6p_c" metaid="_6a1d6c5a-1a82-48c8-b683-6aaa8bc960f0" name="D_Mannose_6_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H11O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N4O9P" hasOnlySubstanceUnits="true" id="M_5aprbu_c" metaid="_956bb393-be66-4b4b-a4ba-2d429c8bd248" name="5_Amino_6__5__phosphoribitylamino_uracil" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H15N4O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="X" hasOnlySubstanceUnits="true" id="M_dsbdox_c" metaid="_284731a5-c739-47cf-8d77-97ce4a14ed4a" name="fused_thiol_disulfide_interchange_protein__oxidized_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: X</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O13P3" hasOnlySubstanceUnits="true" id="M_atp_c" metaid="_19cd466b-47a4-41ff-8587-533476481886" name="ATP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H12N5O13P3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5" hasOnlySubstanceUnits="true" id="M_fuc_L_p" metaid="_61db7a7f-c90a-4ce6-bca1-2f069f020836" name="M_fuc_L_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H12O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N2O3S" hasOnlySubstanceUnits="true" id="M_btn_e" metaid="_927232ea-6021-48bc-9666-ef542c59560c" name="M_btn_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H15N2O3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NOSR" hasOnlySubstanceUnits="true" id="M_cystrna_c" metaid="f79ecc3e-685c-48e1-80dc-e13aa96fbbed" name="L_Cysteinyl_tRNA_Cys_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7NOSR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15O2" hasOnlySubstanceUnits="true" id="M_octa_c" metaid="cc6b7289-42de-4e34-8da9-691d9ccc8500" name="octanoate__n_C8_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H15O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N2O3S" hasOnlySubstanceUnits="true" id="M_btn_p" metaid="_749e35e8-ab24-45d7-93ba-1afe7f049832" name="M_btn_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H15N2O3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8NO4PS" hasOnlySubstanceUnits="true" id="M_4mpetz_c" metaid="cd921023-9544-4ec4-b121-887e4358d966" name="4_Methyl_5__2_phosphoethyl__thiazole" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H8NO4PS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H13N2O2" hasOnlySubstanceUnits="true" id="M_orn_c" metaid="c72afa0a-cfdb-4bcf-ab8d-2d7b74fb2088" name="Ornithine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H13N2O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NOR" hasOnlySubstanceUnits="true" id="M_valtrna_c" metaid="_4251ba8b-01cc-4752-9443-08cef24bdb93" name="L_Valyl_tRNA_Val_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H11NOR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnagly_c" metaid="_9c1bcdbe-60da-4ece-bd5a-0a9bf30c26b0" name="tRNA_Gly_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H13N2O2" hasOnlySubstanceUnits="true" id="M_orn_e" metaid="_86686940-58f7-40a6-b87b-9bcfb66c59e9" name="Ornithine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H13N2O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H36N7O19P3S" hasOnlySubstanceUnits="true" id="M_malcoame_c" metaid="_1052078b-3eba-478d-9087-7b7e0e161b42" name="malonyl_CoA_methyl_ester" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C25H36N7O19P3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O" hasOnlySubstanceUnits="true" id="M_h2o_e" metaid="e11a6b2b-0b7e-4a36-8a04-0af722bbf9c1" name="H2O" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: H2O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H32N4O4" hasOnlySubstanceUnits="true" id="M_ppp9_c" metaid="d533814d-ad29-4c19-8387-463c4c6fa319" name="Protoporphyrin" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C34H32N4O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2" hasOnlySubstanceUnits="true" id="M_co2_e" metaid="_3421dea5-b95e-4be2-b898-7349691945a2" name="Carbon_dioxide_CO2" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: CO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O" hasOnlySubstanceUnits="true" id="M_h2o_c" metaid="ba40bb8c-cf64-404e-9faa-1c5435e09c2c" name="H2O" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: H2O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N2O3S" hasOnlySubstanceUnits="true" id="M_btn_c" metaid="e34048c3-50fa-419d-9e5d-ac985f6fdf30" name="Biotin" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H15N2O3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2" hasOnlySubstanceUnits="true" id="M_co2_c" metaid="_7f7c8e07-16ce-490f-b701-6cfb7edd1cc5" name="Carbon_dioxide_CO2" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: CO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O8P" hasOnlySubstanceUnits="true" id="M_cmp_c" metaid="ce3a8631-3514-4927-a5fc-9266053df778" name="CMP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H12N3O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N2O5" hasOnlySubstanceUnits="true" id="M_sucorn_c" metaid="_49eee4fa-a32f-4d62-99a1-a758a3e171b8" name="M_sucorn_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H15N2O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11O7P" hasOnlySubstanceUnits="true" id="M_2me4p_c" metaid="_74b04e95-84b3-4aab-94da-f8858bd56b44" name="2_C_methyl_D_erythritol_4_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H11O7P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C107H177N29O29S2" hasOnlySubstanceUnits="true" id="M_LesA_e" metaid="_795a3dc1-b108-47e4-82da-a966f9204c0e" name="M_LesA_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C107H177N29O29S2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H61O13P2" hasOnlySubstanceUnits="true" id="M_pgp141_c" metaid="_7bc2cd0a-2755-4383-9602-b2b68e04de0e" name="Phosphatidylglycerophosphate__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C34H61O13P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C107H177N29O29S2" hasOnlySubstanceUnits="true" id="M_LesA_c" metaid="_9a311e5a-f85b-4af7-83b1-307bb1e1a41e" name="M_LesA_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C107H177N29O29S2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N10O21P4" hasOnlySubstanceUnits="true" id="M_gp4g_c" metaid="_7f862854-7604-4f31-90ef-06ec0af81a4a" name="P1_P4_Bis_5__guanosyl__tetraphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C20H24N10O21P4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HSe" hasOnlySubstanceUnits="true" id="M_seln_c" metaid="_7f45bce4-645d-4eb0-a162-61532f8bb480" name="Selenide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HSe</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2" hasOnlySubstanceUnits="true" id="M_co2_p" metaid="e3fda4fd-1cd7-4cfc-9921-a79e27f8ce10" name="Carbon_dioxide_CO2" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: CO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10O5" hasOnlySubstanceUnits="true" id="M_3c3hmp_c" metaid="_216d7643-f563-44c8-9cd7-6c6f804a68b7" name="3_Carboxy_3_hydroxy_4_methylpentanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H10O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H66N7O17P3S" hasOnlySubstanceUnits="true" id="M_stcoa_c" metaid="bded8546-6745-4b87-a769-96038f1148b6" name="Stearoyl_CoA__n_C18_0CoA_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C39H66N7O17P3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdhdecg_c" metaid="_71e9eef0-13ec-4a15-ae4e-41e4f8012ba2" name="CDP_1_2_dihexadecanoylglycerol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C44H79N3O15P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H61O13P2" hasOnlySubstanceUnits="true" id="M_pgp141_p" metaid="f1441528-9bed-4ed1-81d1-40a0e3d45edf" name="Phosphatidylglycerophosphate__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C34H61O13P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H12O11P" hasOnlySubstanceUnits="true" id="M_kdo8p_c" metaid="_3870b262-b055-423b-82f9-cceb24028cf0" name="3_Deoxy_D_manno_octulosonate_8_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H12O11P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H21N4O9P" hasOnlySubstanceUnits="true" id="M_fmnh2_c" metaid="fbc52601-3142-4153-a874-df831c3329e3" name="Reduced_FMN" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C17H21N4O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_f1p_c" metaid="_732925ea-c862-44b5-b095-fc72f48c84c1" name="D_Fructose_1_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H11O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C80H124N16O42" hasOnlySubstanceUnits="true" id="M_murein5p5p_p" metaid="_767502c9-bffc-4038-9454-353c3eec46b5" name="two_linked_disacharide_pentapeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C80H124N16O42</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H63O8P" hasOnlySubstanceUnits="true" id="M_pa161_p" metaid="_859222c2-bac6-476c-aec6-1e01bb937695" name="1_2_dihexadec_9_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C35H63O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25N2O8PRS" hasOnlySubstanceUnits="true" id="M_but2eACP_c" metaid="e30db6f9-3447-42ac-bfd6-6c005ac804b3" name="But_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15H25N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H58N7O17P3S" hasOnlySubstanceUnits="true" id="M_tdcoa_c" metaid="_40b38630-6ac7-4df3-b3d1-b8b6c5937bf9" name="Tetradecanoyl_CoA__n_C14_0CoA_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C35H58N7O17P3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C107H177N29O29S2" hasOnlySubstanceUnits="true" id="M_LesA_p" metaid="fab00509-5733-4be1-812b-dcd3bf58f433" name="M_LesA_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C107H177N29O29S2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18O11P" hasOnlySubstanceUnits="true" id="M_g3pi_p" metaid="_0c73fa4a-1bce-4d13-84df-e0da19418edc" name="sn_Glycero_3_phospho_1_inositol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H18O11P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H29O7P1" hasOnlySubstanceUnits="true" id="M_1ddecg3p_c" metaid="ecffca5d-e302-4a6b-831c-ea3a5c41242e" name="1_dodecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15H29O7P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H63O8P" hasOnlySubstanceUnits="true" id="M_pa161_c" metaid="_435728ef-032c-4a1e-b01c-fa04d674b275" name="1_2_dihexadec_9_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C35H63O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H76O4" hasOnlySubstanceUnits="true" id="M_q8h2_c" metaid="_4974a112-1b7c-4849-ba38-76daac76671f" name="Ubiquinol_8" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C49H76O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C940H1548N8O661P8" hasOnlySubstanceUnits="true" id="M_core_kdo2lip6_XF_p" metaid="cff7fb8f-ce56-4a84-acd8-a2651d1805c3" name="M_core_kdo2lip6_XF_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C940H1548N8O661P8</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="HPO4" hasOnlySubstanceUnits="true" id="M_pi_e" metaid="_42bc2734-835b-4640-9646-02c816f521ca" name="Phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HPO4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C71H109N13O39" hasOnlySubstanceUnits="true" id="M_murein4p3p_p" metaid="f8f7d39e-bdaa-4ee9-814d-c0b4ec9160f5" name="two_linked_disacharide_tetrapeptide_and_tripeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C71H109N13O39</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="HPO4" hasOnlySubstanceUnits="true" id="M_pi_p" metaid="_61d6192c-12fb-4874-8564-e8046e4c5c4b" name="Phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HPO4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O2" hasOnlySubstanceUnits="true" id="M_ac_p" metaid="_5b78739f-a245-49b5-a6c1-569bfc8d4190" name="Acetate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C2H3O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H23N5O15P2" hasOnlySubstanceUnits="true" id="M_gdp6dm_c" metaid="f67b76aa-cca5-41d4-aa13-b154bd82377c" name="M_gdp6dm_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C16H23N5O15P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaser_c" metaid="_94ef3223-799e-471a-a1c8-613e870c7f5d" name="tRNA_Ser_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18O11P" hasOnlySubstanceUnits="true" id="M_g3pi_c" metaid="fc2173d0-12bd-44f8-89a1-2a39027bfe36" name="sn_Glycero_3_phospho_1_inositol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H18O11P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H27N3O15" hasOnlySubstanceUnits="true" id="M_enter_c" metaid="e0461604-6ffb-422a-b6b7-7b113fa01607" name="M_enter_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C30H27N3O15</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18O11P" hasOnlySubstanceUnits="true" id="M_g3pi_e" metaid="_4b9027db-81ed-47db-90e0-74b9277095ad" name="sn_Glycero_3_phospho_1_inositol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H18O11P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H27N3O15" hasOnlySubstanceUnits="true" id="M_enter_e" metaid="_5703cd1f-aea5-4cf1-8f7d-5f9cf0f72c8d" name="M_enter_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C30H27N3O15</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaasn_c" metaid="_1e5964c2-05d7-4d2a-a5b9-dec66466ab0e" name="M_trnaasn_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="R" hasOnlySubstanceUnits="true" id="M_CopA_p" metaid="_12b71ebf-a259-4f49-8429-b7845a88e872" name="Protein_CopA" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: R</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N6O12S2" hasOnlySubstanceUnits="true" id="M_gthox_c" metaid="c7bf02ef-66b8-4dc1-9026-53fec7f7feee" name="Oxidized_glutathione" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C20H30N6O12S2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C940H1548N8O661P8" hasOnlySubstanceUnits="true" id="M_core_kdo2lip6_XF_c" metaid="_523bd485-6a20-4c1c-ba49-a4bcd8e839f5" name="M_core_kdo2lip6_XF_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C940H1548N8O661P8</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C940H1548N8O661P8" hasOnlySubstanceUnits="true" id="M_core_kdo2lip6_XF_e" metaid="_3c4b17e4-1a58-4d30-a679-831996c94151" name="M_core_kdo2lip6_XF_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C940H1548N8O661P8</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H27N2O11PRS" hasOnlySubstanceUnits="true" id="M_ogmeACP_c" metaid="_83613f5f-54e6-4465-b92a-7751cae06841" name="3_Oxo_glutaryl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C17H27N2O11PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaleu_c" metaid="_107bbd4f-b67f-4387-9455-7b833fcf6e1e" name="tRNA_Leu_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnalys_c" metaid="_79f3e812-04d9-429e-be7d-00d183252771" name="tRNA_Lys_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O6P" hasOnlySubstanceUnits="true" id="M_g3p_c" metaid="_2455d675-97e0-427d-80b5-ef339cc6e2ac" name="Glyceraldehyde_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H5O6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H27N3O15" hasOnlySubstanceUnits="true" id="M_enter_p" metaid="_36d171ac-68e5-47ea-84de-7f657cad5803" name="M_enter_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C30H27N3O15</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2Se" hasOnlySubstanceUnits="true" id="M_selcys_c" metaid="_2ef535bc-d692-4e1e-9cc9-ce51d614b918" name="M_selcys_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7NO2Se</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O3" hasOnlySubstanceUnits="true" id="M_acorn_c" metaid="_2df9a240-cce3-45d5-92ab-8d8b55b249ba" name="N2_Acetyl_L_ornithine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H14N2O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HPO4" hasOnlySubstanceUnits="true" id="M_pi_c" metaid="b321ede9-f332-40f5-bd9c-8757e9fae686" name="Phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HPO4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N6O12S2" hasOnlySubstanceUnits="true" id="M_gthox_e" metaid="cb7ad6c5-1d9d-46be-985b-1580063ca9d6" name="Oxidized_glutathione" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C20H30N6O12S2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2R" hasOnlySubstanceUnits="true" id="M_sertrna_sec_c" metaid="_813b9900-7e83-4d33-8f58-d813654969ef" name="M_sertrna_sec_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7NO2R</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO4" hasOnlySubstanceUnits="true" id="M_achms_c" metaid="_654b6487-592d-4ac2-9d08-f499b6df30b3" name="O_Acetyl_L_homoserine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H11NO4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H21N7O7" hasOnlySubstanceUnits="true" id="M_10fthf_c" metaid="a18c185f-3892-48a6-9c88-b7d7fb0619e6" name="10_Formyltetrahydrofolate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C20H21N7O7</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32N7O16P3S" hasOnlySubstanceUnits="true" id="M_coa_c" metaid="c9061d98-c8fc-433d-a37f-e984fe545067" name="Coenzyme_A" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C21H32N7O16P3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O2S" hasOnlySubstanceUnits="true" id="M_so2_c" metaid="_20457c4d-2162-49a6-807b-5e5f4d4227af" name="M_so2_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: O2S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O" hasOnlySubstanceUnits="true" id="M_acald_p" metaid="_3d51ca32-ee50-4913-a791-0c41f0989c06" name="M_acald_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C2H4O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6NO4" hasOnlySubstanceUnits="true" id="M_2ogm_c" metaid="_5884f0fd-9263-47df-88ea-da40d9d374e3" name="M_2ogm_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H6NO4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N5O6S" hasOnlySubstanceUnits="true" id="M_amob_c" metaid="_1d835c16-17ae-4d73-93bb-36cb6d93ba15" name="S_Adenosyl_4_methylthio_2_oxobutanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15H19N5O6S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O" hasOnlySubstanceUnits="true" id="M_acald_e" metaid="_0abd461f-9a15-4211-9311-ce43c62aab62" name="M_acald_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C2H4O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O" hasOnlySubstanceUnits="true" id="M_acald_c" metaid="_143625ae-b64c-4fb0-80f6-9efe13a7b9d0" name="Acetaldehyde" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C2H4O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8N5O3" hasOnlySubstanceUnits="true" id="M_cph4_c" metaid="afd05253-971f-4a66-8b65-5ac1f306509d" name="6_carboxy_5_6_7_8_tetrahydropterin" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H8N5O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H24N2O16P2" hasOnlySubstanceUnits="true" id="M_dtdpglu_c" metaid="_0bba1122-5723-4fd3-8f21-e2e91020abec" name="dTDPglucose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C16H24N2O16P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O7PS" hasOnlySubstanceUnits="true" id="M_5mdr1p_c" metaid="_184f9078-bb7d-46cf-8a62-b5539976b76d" name="M_5mdr1p_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H11O7PS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H89O7P2" hasOnlySubstanceUnits="true" id="M_udcpdp_c" metaid="ad0e2184-1624-418e-9618-17b79197331f" name="Undecaprenyl_diphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C55H89O7P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Mg" hasOnlySubstanceUnits="true" id="M_mg2_c" metaid="_8d2dc306-1ffd-4add-8283-c1b37704bcb9" name="Magnesium" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Mg</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H21N7O7" hasOnlySubstanceUnits="true" id="M_5fthf_c" metaid="acdfb364-95bd-4e0e-a46f-f1920c900da7" name="5_Formyltetrahydrofolate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C20H21N7O7</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hcpalm9eACP_c" metaid="f543c9a3-fd16-4ccb-9272-7617c7a973f0" name="R__3_hydroxy_cis_palm_9_eoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C27H49N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H82NO8P" hasOnlySubstanceUnits="true" id="M_pe180_c" metaid="_4048579e-4f31-481a-947b-5325a88a525f" name="phosphatidylethanolamine__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C41H82NO8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="S4Fe4" hasOnlySubstanceUnits="true" id="M_4fe4s_c" metaid="_9b98389e-5f17-43b1-97af-987fda6edd76" name="4Fe_4S__iron_sulfur_cluster" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: S4Fe4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Mg" hasOnlySubstanceUnits="true" id="M_mg2_e" metaid="_6204c224-60fd-496c-ae7d-3a640cf96806" name="Magnesium" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Mg</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O5" hasOnlySubstanceUnits="true" id="M_gsn_c" metaid="_675aea4f-9d89-4316-b21d-8835e7bdf088" name="Guanosine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H13N5O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5O" hasOnlySubstanceUnits="true" id="M_gua_p" metaid="bd079a49-4a78-4596-b5a4-e1e2e0ce31a1" name="M_gua_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H5N5O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="S" hasOnlySubstanceUnits="true" id="M_s_c" metaid="_0abe441f-373f-44a8-a346-438e07c487ed" name="M_s_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="S" hasOnlySubstanceUnits="true" id="M_s_e" metaid="_02ce892b-ee70-4605-826f-fac5cfb92aa4" name="M_s_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H23N6O5S" hasOnlySubstanceUnits="true" id="M_amet_c" metaid="_05c3b996-37d0-476c-bd6b-8e86a72850b0" name="S_Adenosyl_L_methionine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15H23N6O5S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C800H1302N100O501" hasOnlySubstanceUnits="true" id="M_chitin_polymer_e" metaid="_2f386823-86f0-417b-a5d8-4ddbd63d6fe5" name="M_chitin_polymer_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C800H1302N100O501</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H82NO8P" hasOnlySubstanceUnits="true" id="M_pe180_p" metaid="_4aa176f4-546c-4bce-bbbc-259d7819815a" name="phosphatidylethanolamine__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C41H82NO8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H12N3O7P" hasOnlySubstanceUnits="true" id="M_air_c" metaid="bafef441-55b1-482a-83ef-2628e0331c85" name="5_amino_1__5_phospho_D_ribosyl_imidazole" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H12N3O7P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H57N1O10P1" hasOnlySubstanceUnits="true" id="M_ps120_c" metaid="_7286fb91-0c02-49b2-9a94-7e458d73ae30" name="phosphatidylserine__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C30H57N1O10P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N2OR" hasOnlySubstanceUnits="true" id="M_lystrna_c" metaid="adb25803-b9e7-4b8b-a860-1b9ffd6ad032" name="L_Lysine_tRNA__Lys_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H15N2OR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5O" hasOnlySubstanceUnits="true" id="M_gua_e" metaid="b20f58dc-f884-461b-a907-84d41e230386" name="M_gua_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H5N5O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5O" hasOnlySubstanceUnits="true" id="M_gua_c" metaid="_8174d229-a534-4c7b-b1e1-9157c17c78fb" name="Guanine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H5N5O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Mg" hasOnlySubstanceUnits="true" id="M_mg2_p" metaid="_3478a092-b7f3-4a06-b4b7-2932b0c98361" name="Magnesium" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Mg</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2R" hasOnlySubstanceUnits="true" id="M_tyrtrna_c" metaid="_104ba3cc-a31b-4300-b87d-1d71d75e5eb4" name="L_Tyrosyl_tRNA_Tyr_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H11NO2R</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H20N4O6" hasOnlySubstanceUnits="true" id="M_ribflv_c" metaid="_355d6a80-123c-435c-86bd-93b68e593626" name="Riboflavin" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C17H20N4O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H20N2O9PS" hasOnlySubstanceUnits="true" id="M_4ppcys_c" metaid="_2279bafc-1eda-409b-8625-74311a00675d" name="N___R__4_Phosphopantothenoyl__L_cysteine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C12H20N2O9PS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H65O7P2" hasOnlySubstanceUnits="true" id="M_octdp_c" metaid="_699d66d7-799f-41db-829e-575eb4fd5124" name="all_trans_Octaprenyl_diphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C40H65O7P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N6O12S2" hasOnlySubstanceUnits="true" id="M_gthox_p" metaid="_26ddbc66-1814-4d9a-99fa-e789983744f4" name="Oxidized_glutathione" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C20H30N6O12S2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H7N2O3" hasOnlySubstanceUnits="true" id="M_4izp_c" metaid="_35b8c0ec-00e3-478a-8b32-e6ea450f48ca" name="4_Imidazolone_5_propanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H7N2O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5N4O3" hasOnlySubstanceUnits="true" id="M_cdg_c" metaid="ba9e8d8e-5f5a-4d46-a4eb-ee9bc01d6cc8" name="7_deaza_7_carboxyguanine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H5N4O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" hasOnlySubstanceUnits="true" id="M_BIOMASS_XF_c" metaid="_977000d3-3f7b-4a5e-9b66-f76349244748" name="M_BIOMASS_XF_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C41.554061837540075H71.78553537948964N9.85382400884015O14.938244017389934P0.8811200258000156R1.27675647831893E-15Mn7.34919E-4Mo7.37685E-6Cl0.005532639K0.207473951Co2.67411E-5Cu7.53361E-4S0.24700915678000002Zn3.62388E-4Mg0.009221064Ni3.43024E-4Ca0.005532639Fe0.017346515399999998</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O6" hasOnlySubstanceUnits="true" id="M_2ins_c" metaid="_18dda0b7-ffe4-4fbe-bea5-0c48a7b1fba9" name="2_Inosose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H10O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H6NO2" hasOnlySubstanceUnits="true" id="M_4abz_c" metaid="c3252fbe-8ecb-4cea-a46e-72ae990ae870" name="4_Aminobenzoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H6NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N5O14P2" hasOnlySubstanceUnits="true" id="M_prbamp_c" metaid="_9b62d40a-b552-45b2-bcaa-e6abfc107cf8" name="1__5_Phosphoribosyl__AMP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15H19N5O14P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="MoO4" hasOnlySubstanceUnits="true" id="M_mobd_p" metaid="ddf06dd7-4534-41b4-b9f5-4bfa80feb7e8" name="Molybdate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: MoO4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O2" hasOnlySubstanceUnits="true" id="M_ac_c" metaid="_9fa08c5e-81e9-4b89-bd09-002a3b6a40a1" name="Acetate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C2H3O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H89O7P2" hasOnlySubstanceUnits="true" id="M_udcpdp_p" metaid="a5341159-851e-4f2b-8b6c-1a0bef5d110f" name="Undecaprenyl_diphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C55H89O7P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O2" hasOnlySubstanceUnits="true" id="M_ac_e" metaid="b8c75f41-aa81-415f-adca-07a804537370" name="Acetate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C2H3O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O2S" hasOnlySubstanceUnits="true" id="M_mtpp_c" metaid="_5168e61b-5473-429a-af16-459b37a372fa" name="M_mtpp_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H7O2S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45N2O9PRS" hasOnlySubstanceUnits="true" id="M_3omrsACP_c" metaid="b6f11f96-e986-4bb4-8cfa-769c56fd0286" name="3_Oxotetradecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C25H45N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N2O11" hasOnlySubstanceUnits="true" id="M_chtbs_e" metaid="bfff0b3d-04c2-4d68-be9f-36697be6f607" name="N_N_diacetylchitobiose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C16H28N2O11</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O5" hasOnlySubstanceUnits="true" id="M_cbasp_c" metaid="_1955851f-53a2-41d8-810e-c6a10d53f245" name="N_Carbamoyl_L_aspartate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H6N2O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N2O11" hasOnlySubstanceUnits="true" id="M_chtbs_c" metaid="_95bfee1b-96ad-46c3-ad16-1dec0a80adde" name="N_N_diacetylchitobiose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C16H28N2O11</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H20NO6P" hasOnlySubstanceUnits="true" id="M_g3pc_c" metaid="_618ce2bf-2ed0-4cb8-aaa2-7c81d5cc9570" name="sn_Glycero_3_phosphocholine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H20NO6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69O13P2" hasOnlySubstanceUnits="true" id="M_pgp161_c" metaid="_4c529996-78c3-4952-99e8-fba13ecc8f9f" name="Phosphatidylglycerophosphate__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C38H69O13P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="H2S" hasOnlySubstanceUnits="true" id="M_h2s_p" metaid="fae23ffb-3137-4836-bcf0-8783b4e71fdc" name="Hydrogen_sulfide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: H2S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H20NO6P" hasOnlySubstanceUnits="true" id="M_g3pc_e" metaid="_3a4a7647-cc01-4b46-a0ed-e2caca8ae008" name="sn_Glycero_3_phosphocholine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H20NO6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23O2" hasOnlySubstanceUnits="true" id="M_ddca_e" metaid="_122ad39f-5de6-42b6-ba49-0c2c3585b9f4" name="Dodecanoate__n_C12_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C12H23O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N2O11" hasOnlySubstanceUnits="true" id="M_chtbs_p" metaid="d8376137-fc3d-4416-9fda-76a02f848570" name="N_N_diacetylchitobiose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C16H28N2O11</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N2O18P2" hasOnlySubstanceUnits="true" id="M_udpgalur_c" metaid="_3e478232-7397-4d11-856d-df50f0daaac3" name="M_udpgalur_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15H19N2O18P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H22N3" hasOnlySubstanceUnits="true" id="M_spmd_e" metaid="ff16cf44-82b1-4346-94e1-245b42443e1a" name="Spermidine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H22N3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O3" hasOnlySubstanceUnits="true" id="M_glyc_p" metaid="_6c5d646c-4449-4507-ad71-ba318ebaf4df" name="Glycerol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H8O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O4" hasOnlySubstanceUnits="true" id="M_dcyt_c" metaid="e43f2edb-9189-4fbb-a1f9-430eb760eae3" name="Deoxycytidine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H13N3O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23O2" hasOnlySubstanceUnits="true" id="M_ddca_c" metaid="c682527b-94e1-4c8a-87df-9517957f0965" name="Dodecanoate__n_C12_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C12H23O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C68H102N12O37" hasOnlySubstanceUnits="true" id="M_murein3px3p_p" metaid="_476f5504-6060-4a5b-ba42-ea0c14f37e1a" name="two_disacharide_linked_murein_units__tripeptide_crosslinked_tripeptide__A2pm__A2pm___middle_of_chain_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C68H102N12O37</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H115N2O30P2" hasOnlySubstanceUnits="true" id="M_kdolipid4_XF_c" metaid="_8f6f558e-3e61-4022-81a0-821f62a0529c" name="M_kdolipid4_XF_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C64H115N2O30P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H22N3" hasOnlySubstanceUnits="true" id="M_spmd_c" metaid="_1bc902f1-27a8-40e4-ac43-2f6dadec93e3" name="Spermidine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H22N3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O12P2" hasOnlySubstanceUnits="true" id="M_udp_c" metaid="_886d8581-de18-42c5-b2f3-5bd554ba92bd" name="UDP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H11N2O12P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H53N2O8PRS" hasOnlySubstanceUnits="true" id="M_octeACP_c" metaid="_6fc1220a-b131-4747-81f2-970e39a8f3aa" name="cis_octadec_11_enoyl__acyl_carrier_protein___n_C18_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C29H53N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H3N2O4" hasOnlySubstanceUnits="true" id="M_orot_c" metaid="_9892e8f7-cd75-424c-9921-d2e5441a9bf2" name="Orotate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H3N2O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H22N3" hasOnlySubstanceUnits="true" id="M_spmd_p" metaid="_88096ddb-8776-4948-a7de-e0cf40e74b5d" name="Spermidine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H22N3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N4O2" hasOnlySubstanceUnits="true" id="M_arg_L_c" metaid="_94c434a4-5a34-4449-8db4-853c81a64cc9" name="L_Arginine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H15N4O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H19N4O9P" hasOnlySubstanceUnits="true" id="M_fmn_c" metaid="_5ad4d4a7-2aa3-47bd-8e30-3d523930f1e9" name="FMN" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C17H19N4O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H22N4O6" hasOnlySubstanceUnits="true" id="M_rbflvrd_c" metaid="a6e8fe44-0f41-4834-91f6-6edf74df2da0" name="M_rbflvrd_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C17H22N4O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N4O2" hasOnlySubstanceUnits="true" id="M_arg_L_e" metaid="_0c8316dc-3ba0-49d6-a957-aae85d9e7cad" name="L_Arginine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H15N4O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69O13P2" hasOnlySubstanceUnits="true" id="M_pgp161_p" metaid="a0da53b8-c792-41ba-8484-f4ec21057617" name="Phosphatidylglycerophosphate__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C38H69O13P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O3" hasOnlySubstanceUnits="true" id="M_glyc_c" metaid="_9df2aff8-e262-4ebe-9101-31dd63ea3f87" name="Glycerol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H8O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N5O20P4" hasOnlySubstanceUnits="true" id="M_prbatp_c" metaid="f7a1bbc2-1d49-4a51-969c-3e4ea072aa16" name="1__5_Phosphoribosyl__ATP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15H19N5O20P4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O11P2" hasOnlySubstanceUnits="true" id="M_cdp_c" metaid="_12dfc747-9d1d-42fc-8415-cef561969dd8" name="CDP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H12N3O11P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O3" hasOnlySubstanceUnits="true" id="M_glyc_e" metaid="_36ac6ef4-5949-4647-ae8e-7d19fdfdb042" name="Glycerol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H8O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O4" hasOnlySubstanceUnits="true" id="M_pant_R_c" metaid="ba5bdbf6-327c-4868-bdb6-05e79154bf88" name="R__Pantoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H11O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N4O2" hasOnlySubstanceUnits="true" id="M_arg_L_p" metaid="e75fff8e-1303-4870-b151-b37a796d810c" name="L_Arginine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H15N4O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H62O10P1" hasOnlySubstanceUnits="true" id="M_pg141_c" metaid="_396efca1-3737-4da9-801b-835aba9e0d3b" name="Phosphatidylglycerol__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C34H62O10P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H3N2O4" hasOnlySubstanceUnits="true" id="M_orot_p" metaid="f3256e54-e8cb-4076-a633-48b7d04e0753" name="Orotate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H3N2O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2" hasOnlySubstanceUnits="true" id="M_for_p" metaid="_94e1c75d-9258-432e-a9f0-c5510773ae4b" name="Formate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: CHO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="O4S" hasOnlySubstanceUnits="true" id="M_so4_e" metaid="_75423fa7-d028-4ccd-87fd-e54fb68a549e" name="Sulfate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: O4S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5O6" hasOnlySubstanceUnits="true" id="M_2mcacn_c" metaid="_0369c556-1309-46b7-911c-c8ae4028fa9e" name="cis_2_Methylaconitate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H5O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H71O8P1" hasOnlySubstanceUnits="true" id="M_pa181_p" metaid="_53a3581f-53a2-4327-bd2e-d961186629d2" name="1_2_dioctadec_11_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C39H71O8P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O4S" hasOnlySubstanceUnits="true" id="M_so4_c" metaid="_5d8acb70-ed97-4be9-8bf7-0924b2df4903" name="Sulfate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: O4S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H3N2O4" hasOnlySubstanceUnits="true" id="M_orot_e" metaid="_2a2ef40d-c0e1-43a3-b035-3f8c6aad8341" name="Orotate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H3N2O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="O4S" hasOnlySubstanceUnits="true" id="M_so4_p" metaid="_0e3610ce-7c67-4912-b48c-247cfa74a857" name="Sulfate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: O4S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="H2S" hasOnlySubstanceUnits="true" id="M_h2s_e" metaid="_2a472705-813d-43ca-bc43-a33f7afca219" name="Hydrogen_sulfide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: H2S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H2S" hasOnlySubstanceUnits="true" id="M_h2s_c" metaid="ad954544-7662-42d5-800f-2f227ad2acaf" name="Hydrogen_sulfide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: H2S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H71O8P1" hasOnlySubstanceUnits="true" id="M_pa181_c" metaid="_2726332e-0f8d-4091-a348-94bdb68d7b10" name="1_2_dioctadec_11_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C39H71O8P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21O14P" hasOnlySubstanceUnits="true" id="M_tre6p_c" metaid="_1a6fc82e-1e0c-4fc2-99eb-4550d4c85a83" name="alpha_alpha__Trehalose_6_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C12H21O14P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O7P" hasOnlySubstanceUnits="true" id="M_dxyl5p_c" metaid="f1d8ed1b-b19b-4fde-8fcd-c8e21723c2b3" name="1_deoxy_D_xylulose_5_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H9O7P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H62O10P1" hasOnlySubstanceUnits="true" id="M_pg141_p" metaid="_2a7a19c8-9350-4c9e-a897-932010c24e8e" name="Phosphatidylglycerol__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C34H62O10P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5" hasOnlySubstanceUnits="true" id="M_ade_p" metaid="_88c0f2d2-4508-4acc-bf5f-a0d5b625e467" name="Adenine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H5N5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O2" hasOnlySubstanceUnits="true" id="M_his_L_p" metaid="d0fff8a7-0697-486a-bf94-43f3a5b74cba" name="L_Histidine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H9N3O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C63H103O11N1P2" hasOnlySubstanceUnits="true" id="M_f2Nappudp_c" metaid="bb9d8548-b26d-4f7a-b0d4-1f504d604de4" name="M_f2Nappudp_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C63H103O11N1P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_fru_p" metaid="_69c8f14d-d64c-4d8c-9a77-25967c14aa76" name="D_Fructose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H12O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H2NO2" hasOnlySubstanceUnits="true" id="M_dhgly_c" metaid="_7254c1c8-5a1c-4d57-8589-aeecd451abfd" name="M_dhgly_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C2H2NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H66N1O8P1" hasOnlySubstanceUnits="true" id="M_pe140_c" metaid="_8245318c-ed8c-49d2-84fc-e779a60f1962" name="phosphatidylethanolamine__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C33H66N1O8P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O2" hasOnlySubstanceUnits="true" id="M_his_L_e" metaid="_8f084f1e-30e1-4cb4-bcb6-460cd5e20606" name="L_Histidine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H9N3O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O2" hasOnlySubstanceUnits="true" id="M_his_L_c" metaid="_61773072-1fb7-4ec7-ac8f-2390ada500aa" name="L_Histidine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H9N3O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O12P2" hasOnlySubstanceUnits="true" id="M_fdp_c" metaid="_6ccf20bf-c7be-4f81-a98e-3f4d6b73a91c" name="D_Fructose_1_6_bisphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H10O12P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C111H169N21O59" hasOnlySubstanceUnits="true" id="M_murein4px4p4p_p" metaid="_4cb12875-094c-41d1-94ff-bc20d2e0fbd7" name="three_disacharide_linked_murein_units__tetrapeptide_crosslinked_tetrapeptide__A2pm__D_ala___one_uncrosslinked_tetrapaptide___middle_of_chain_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C111H169N21O59</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H73N1O10P1" hasOnlySubstanceUnits="true" id="M_ps160_c" metaid="b76187c5-3735-4406-9f26-251c7ca293bc" name="phosphatidylserine__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C38H73N1O10P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H66N1O8P1" hasOnlySubstanceUnits="true" id="M_pe140_p" metaid="bf97d63f-337c-4ba2-a1db-c9d2ed5dfe73" name="phosphatidylethanolamine__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C33H66N1O8P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H7O5" hasOnlySubstanceUnits="true" id="M_3dhsk_c" metaid="_041d6376-f95e-45b0-9bdd-fac22a1cf373" name="3_Dehydroshikimate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H7O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14N3O4" hasOnlySubstanceUnits="true" id="M_accitr_c" metaid="b0c01965-2d7a-4351-9104-cb4d34ab2630" name="M_accitr_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H14N3O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O13P3" hasOnlySubstanceUnits="true" id="M_ditp_c" metaid="dfef8771-f0e8-476f-84ae-980d23f32ed1" name="dITP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H11N4O13P3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N5O4" hasOnlySubstanceUnits="true" id="M_thbpt4acam_c" metaid="f1c18f41-2bc6-4b31-b2ec-468cb38d0dca" name="Tetrahydrobiopterin_4a_carbinolamine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H15N5O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C65H124O17P2" hasOnlySubstanceUnits="true" id="M_clpn140_p" metaid="d976ebdc-3b64-4c21-b18c-e8002752fbda" name="cardiolipin__tetratetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C65H124O17P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C34FeH30N4O4" hasOnlySubstanceUnits="true" id="M_pheme_e" metaid="_3b4e271f-4b4f-46be-b161-64021c86a3fd" name="M_pheme_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C34FeH30N4O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O8P" hasOnlySubstanceUnits="true" id="M_ohpb_c" metaid="_43cfdd25-bc13-446b-b54b-1c3ecd101f70" name="2_Oxo_3_hydroxy_4_phosphobutanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H4O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H24N3O15P" hasOnlySubstanceUnits="true" id="M_ckdo_c" metaid="_7358cc12-80df-4e0c-938a-3256918f1736" name="CMP_3_deoxy_D_manno_octulosonate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C17H24N3O15P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3" hasOnlySubstanceUnits="true" id="M_thr_L_p" metaid="ef6fc25f-dc22-448e-ac56-09bb7cd71dd7" name="L_Threonine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H9NO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HSR" hasOnlySubstanceUnits="true" id="M_iscs_c" metaid="_22cb5b73-fbba-4c16-a2ed-1e9242363b30" name="IscS_sulfur_acceptor_protein" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HSR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13N2O5S" hasOnlySubstanceUnits="true" id="M_glucys_c" metaid="f236c86d-42fa-4142-b0e7-d89e523011c4" name="gamma_L_Glutamyl_L_cysteine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H13N2O5S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2OR" hasOnlySubstanceUnits="true" id="M_trptrna_c" metaid="_0529dcc8-2336-4478-a8e2-4e0f631fa51b" name="L_Tryptophanyl_tRNA_Trp_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C11H12N2OR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15O" hasOnlySubstanceUnits="true" id="M_octapb_c" metaid="f7686454-00d0-42f2-b814-35f5295d8038" name="octanoate__protein_bound_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H15O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34FeH30N4O4" hasOnlySubstanceUnits="true" id="M_pheme_c" metaid="_1abc66e7-59fa-40cd-88c1-4242cf1fa425" name="Protoheme" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C34FeH30N4O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H3N" hasOnlySubstanceUnits="true" id="M_nh3_c" metaid="b86d4940-5cb3-4099-971b-2bcc661b41b7" name="M_nh3_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: H3N</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_fru_e" metaid="_4cb9c971-bd9c-48a4-a844-7414f11e8932" name="D_Fructose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H12O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45N2O8PRS" hasOnlySubstanceUnits="true" id="M_tmrs2eACP_c" metaid="c4c1e4fd-5a97-403f-916f-593ac932e591" name="trans_Tetradec_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C25H45N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H14NO6P" hasOnlySubstanceUnits="true" id="M_g3pe_p" metaid="_57754263-bd27-4ea0-b4c9-9a119d3c8eed" name="sn_Glycero_3_phosphoethanolamine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H14NO6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5" hasOnlySubstanceUnits="true" id="M_ade_e" metaid="_52f357c9-6dc1-429d-ad0d-51c134be17ad" name="Adenine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H5N5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H35N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hoctACP_c" metaid="_4f206e71-6854-4ada-8bf4-c315e03c6c74" name="R__3_Hydroxyoctanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C19H35N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5" hasOnlySubstanceUnits="true" id="M_ade_c" metaid="_400eef5a-a6b2-4fda-bfb1-350215ef981e" name="Adenine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H5N5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_tag6p_D_c" metaid="_2fdadae5-7512-4e34-a916-92f11dfbc22d" name="M_tag6p_D_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H11O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H24N3" hasOnlySubstanceUnits="true" id="M_na15dap_c" metaid="_64ba78a0-186c-45a2-b118-8ec27de6bd9e" name="M_na15dap_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H24N3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7N" hasOnlySubstanceUnits="true" id="M_pheacnit_c" metaid="cfd55262-5b07-4537-8d4f-7589f090f6c0" name="Phenylacetonitrile" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H7N</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6O8P" hasOnlySubstanceUnits="true" id="M_4per_c" metaid="_1f658f0f-13bc-4762-bb3d-5ab2ea667f37" name="4_Phospho_D_erythronate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H6O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H56N7O17P3S" hasOnlySubstanceUnits="true" id="M_tdecoa_c" metaid="_0e92c27a-f47c-4a45-adce-07b0220da4af" name="Tetradecenoyl_CoA__n_C14_1CoA_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C35H56N7O17P3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O9P2" hasOnlySubstanceUnits="true" id="M_2mecdp_c" metaid="_65745c5a-9ad9-4206-88c7-5d4a1d556609" name="2_C_methyl_D_erythritol_2_4_cyclodiphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H10O9P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H14NO6P" hasOnlySubstanceUnits="true" id="M_g3pe_c" metaid="_904be4a7-e1c6-4224-901a-ee9c05f9bd13" name="sn_Glycero_3_phosphoethanolamine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H14NO6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H14NO6P" hasOnlySubstanceUnits="true" id="M_g3pe_e" metaid="_5163c9e9-c52c-43a2-aa1d-5212aa0df27f" name="sn_Glycero_3_phosphoethanolamine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H14NO6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9O3" hasOnlySubstanceUnits="true" id="M_tmoxdpq_c" metaid="_5dc181bf-7b30-4e56-a32b-2125c3f403ac" name="tetramethoxydiphenylquinone" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H9O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N6O12S2Se" hasOnlySubstanceUnits="true" id="M_dgslnt_c" metaid="a265ea4f-bf5e-4aca-8bca-8b5d5c1a15d4" name="M_dgslnt_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C20H30N6O12S2Se</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H38N4O17" hasOnlySubstanceUnits="true" id="M_hmbil_c" metaid="_12277419-30ac-46b8-a5c0-7da316ff20ec" name="Hydroxymethylbilane" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C40H38N4O17</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13N2O9P" hasOnlySubstanceUnits="true" id="M_fgam_c" metaid="_6f4ac80f-34f4-49cf-97d7-f2a191e7f6bd" name="N2_Formyl_N1__5_phospho_D_ribosyl_glycinamide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H13N2O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_L_c" metaid="_4ce2e4aa-b2df-43a7-8dca-aed5ebdf3607" name="L_Cysteine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7NO2S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_L_e" metaid="_46466521-2bd4-405a-a792-7e71ccb6e2a2" name="L_Cysteine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7NO2S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="X" hasOnlySubstanceUnits="true" id="M_dsbgox_p" metaid="_3ccba35c-1507-4ef0-beb4-8e449643c06b" name="M_dsbgox_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: X</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NOR" hasOnlySubstanceUnits="true" id="M_leutrna_c" metaid="_5a4d57a8-8d7d-4c7c-b513-ba3118976bde" name="L_Leucyl_tRNA_Leu_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H13NOR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H13NO9P" hasOnlySubstanceUnits="true" id="M_2cpr5p_c" metaid="b943f4bf-1162-4b51-971c-2b5ca8356d8b" name="1__2_Carboxyphenylamino__1_deoxy_D_ribulose_5_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C12H13NO9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43N2O8PRS" hasOnlySubstanceUnits="true" id="M_t3c7mrseACP_c" metaid="f3aeb5ef-5d98-4c04-83cf-f75440550e36" name="trans_3_cis_7_myristoleoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C25H43N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34FeH30N4O4" hasOnlySubstanceUnits="true" id="M_pheme_p" metaid="_026945df-54db-48df-be4f-6d32c2a30bc4" name="M_pheme_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C34FeH30N4O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C57H108O17P2" hasOnlySubstanceUnits="true" id="M_clpn120_p" metaid="eadfade5-58ca-408e-a1e6-177a0f674584" name="cardiolipin__tetradodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C57H108O17P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H24N6O3S" hasOnlySubstanceUnits="true" id="M_ametam_c" metaid="_90a70698-c4fd-42d3-a190-fce1e543592b" name="S_Adenosylmethioninamine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C14H24N6O3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17N4O6" hasOnlySubstanceUnits="true" id="M_argsuc_c" metaid="_548dad0d-e810-4e0c-916f-533710098c69" name="N_omega___L_Arginino_succinate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H17N4O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H57N7O20" hasOnlySubstanceUnits="true" id="M_anhgm4p_p" metaid="ef437769-d96e-486c-a0ac-7675c9c1f6b6" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tetrapeptide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C37H57N7O20</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8NO6P" hasOnlySubstanceUnits="true" id="M_pydx5p_c" metaid="a265d20f-239c-4f2b-96e4-47806c52cb44" name="Pyridoxal_5__phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H8NO6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H63N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdddecg_c" metaid="_5e0de559-0d9f-4aef-bea2-0424d18015d3" name="CDP_1_2_didodecanoylglycerol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C36H63N3O15P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H39N5O14" hasOnlySubstanceUnits="true" id="M_anhm3p_c" metaid="_09dfe524-bbda-4378-a739-2054adc3159d" name="1_6_anhydrous_N_Acetylmuramyl_tripeptide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C26H39N5O14</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N3O7P2" hasOnlySubstanceUnits="true" id="M_2mahmp_c" metaid="_8f0c1114-c946-4418-90a9-839ab1169ae7" name="2_Methyl_4_amino_5_hydroxymethylpyrimidine_diphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H8N3O7P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H57N7O20" hasOnlySubstanceUnits="true" id="M_anhgm4p_c" metaid="ea3dd031-aa5c-47ed-910a-0abf1490feef" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tetrapeptide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C37H57N7O20</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_xu5p_L_c" metaid="_23436539-9e41-4a4d-a6d2-81cd76e0feb0" name="M_xu5p_L_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H9O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8O3S" hasOnlySubstanceUnits="true" id="M_4met2obut_c" metaid="_368e95c1-6823-484a-9e7b-8cf21f3f3edb" name="M_4met2obut_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H8O3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43N2O8PRS" hasOnlySubstanceUnits="true" id="M_ddcaACP_c" metaid="a40a1259-338c-48b2-806e-4b8876626406" name="Dodecanoyl_ACP__n_C12_0ACP_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C23H43N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H34N7O17P3S" hasOnlySubstanceUnits="true" id="M_accoa_c" metaid="dc821adc-7533-46fc-b79a-b053bc224359" name="Acetyl_CoA" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C23H34N7O17P3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H28N9O13P3S" hasOnlySubstanceUnits="true" id="M_athtp_c" metaid="_14063840-dfe8-4359-ad41-296aff807402" name="M_athtp_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C22H28N9O13P3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_man_e" metaid="ea9e4baf-ac95-4edd-9e5f-f6af023440fd" name="M_man_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H12O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnatrp_c" metaid="_4133f28a-dc52-4412-a730-8785003f0495" name="tRNA_Trp_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Cd" hasOnlySubstanceUnits="true" id="M_cd2_p" metaid="_68615065-261f-4adb-90dd-4169baae9fee" name="Cadmium" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Cd</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43O25P" hasOnlySubstanceUnits="true" id="M_EPS_XF_p" metaid="_1425e0c1-5151-429b-82d0-690b4ac59ccc" name="M_EPS_XF_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C26H43O25P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_man_p" metaid="f7ff6e43-be3c-438a-8e9b-65925ce6ea46" name="M_man_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H12O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8N5O8P2" hasOnlySubstanceUnits="true" id="M_6hmhptpp_c" metaid="_409c710f-29d6-4d07-b8f4-d87df02cb571" name="6_hydroxymethyl_dihydropterin_pyrophosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H8N5O8P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N4O3" hasOnlySubstanceUnits="true" id="M_alltn_c" metaid="_47bab33a-0766-4505-87e4-28d8a330b249" name="Allantoin" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H6N4O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Cd" hasOnlySubstanceUnits="true" id="M_cd2_e" metaid="_44d6e309-8a37-487d-99c4-d0bdb19e9ec2" name="Cadmium" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Cd</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O6" hasOnlySubstanceUnits="true" id="M_uri_c" metaid="f8983947-5a36-4518-b9bf-e2aef0578fdd" name="Uridine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H12N2O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2NO5P" hasOnlySubstanceUnits="true" id="M_cbp_c" metaid="b1c48880-7eb1-4123-981b-4ee1cea764b5" name="Carbamoyl_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: CH2NO5P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Cd" hasOnlySubstanceUnits="true" id="M_cd2_c" metaid="_4eed35d5-b595-421f-adaf-11b88f15f818" name="Cadmium" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Cd</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2HO3" hasOnlySubstanceUnits="true" id="M_glx_c" metaid="_674c32f1-edd7-40d6-a8bd-5f6faae95194" name="Glyoxylate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C2HO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_L_p" metaid="b7003694-442e-48bd-a6fd-13dbdfd3041b" name="L_Cysteine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7NO2S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8O8P" hasOnlySubstanceUnits="true" id="M_skm5p_c" metaid="_61c0b10c-e2ef-43ea-9718-a86f1544ca6e" name="M_skm5p_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H8O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C96H172N2O41P2" hasOnlySubstanceUnits="true" id="M_kdo2lipidA_XF_p" metaid="_1099b2b6-5b56-4daa-b70e-9a2872702c32" name="M_kdo2lipidA_XF_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C96H172N2O41P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_g1p_c" metaid="f0b1a5ef-33c9-4a08-92b5-7871d31dfeec" name="D_Glucose_1_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H11O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N2O15P2" hasOnlySubstanceUnits="true" id="M_dtdp4d6dm_c" metaid="_2a63a7ff-a67f-4f69-b544-8a572a3bc467" name="dTDP_4_dehydro_6_deoxy_L_mannose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C16H22N2O15P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C96H172N2O41P2" hasOnlySubstanceUnits="true" id="M_kdo2lipidA_XF_c" metaid="_502ee221-f070-45a1-b54b-0c150d3ff782" name="M_kdo2lipidA_XF_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C96H172N2O41P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21O14P" hasOnlySubstanceUnits="true" id="M_suc6p_c" metaid="_7253893e-3747-45d3-a25b-3efa6dbb7ecb" name="Sucrose_6_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C12H21O14P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H74O4" hasOnlySubstanceUnits="true" id="M_2omhmbl_c" metaid="f209ff94-a4fd-4bf0-a0b0-794f2dc7026f" name="2_Octaprenyl_3_methyl_5_hydroxy_6_methoxy_1_4_benzoquinol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C48H74O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C96H172N2O41P2" hasOnlySubstanceUnits="true" id="M_kdo2lipidA_XF_e" metaid="_69303646-b652-47d7-b28c-a06b743379f5" name="M_kdo2lipidA_XF_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C96H172N2O41P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C77H139N2O38P3" hasOnlySubstanceUnits="true" id="M_hphhlipidA_XF_c" metaid="_3e5799d3-05f9-4a49-96cc-7de3d1cc505c" name="M_hphhlipidA_XF_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C77H139N2O38P3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O5" hasOnlySubstanceUnits="true" id="M_duri_c" metaid="_34107222-3dde-46bf-9616-4a1acfd462f1" name="Deoxyuridine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H12N2O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc2p_p" metaid="_57e43951-ed1a-4e31-820d-96d129a5db07" name="Glycerol_2_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7O6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H41N2O8PRS" hasOnlySubstanceUnits="true" id="M_tddec2eACP_c" metaid="_59c66f20-37e6-4161-8b60-c809a99967cb" name="trans_Dodec_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C23H41N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnagln_c" metaid="dfb26a16-0150-4829-98dd-75d71683c2c5" name="tRNA_Gln_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H27FeN3O15" hasOnlySubstanceUnits="true" id="M_feenter_e" metaid="_06f569a1-82b1-43b5-b046-026c0df888af" name="M_feenter_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C30H27FeN3O15</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O4S2R4" hasOnlySubstanceUnits="true" id="M_trdox_c" metaid="cf02ed71-77c9-4b39-80b2-51932a2f7eca" name="Oxidized_thioredoxin" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H12N4O4S2R4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O8P" hasOnlySubstanceUnits="true" id="M_g3pg_p" metaid="e47dbb18-e115-41f7-9384-3cc6a6e3458c" name="Glycerophosphoglycerol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H14O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H29O2" hasOnlySubstanceUnits="true" id="M_hdcea_p" metaid="_90416f38-abc8-4831-829d-60e30cc03e11" name="Hexadecenoate__n_C16_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C16H29O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43O25P" hasOnlySubstanceUnits="true" id="M_EPS_XF_e" metaid="_2dac150b-c2bc-4097-92ab-2c0d40f43e0b" name="M_EPS_XF_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C26H43O25P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc2p_e" metaid="e1acabc2-2018-4e6b-97d6-976018236dfe" name="Glycerol_2_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7O6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H27FeN3O15" hasOnlySubstanceUnits="true" id="M_feenter_p" metaid="_9c8ce71a-2f18-4327-ad3f-83dd1397a99c" name="M_feenter_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C30H27FeN3O15</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H7O3" hasOnlySubstanceUnits="true" id="M_phpyr_c" metaid="a97a873d-235e-43f9-8f4f-ccc996e10f53" name="Phenylpyruvate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H7O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hdecACP_c" metaid="_7df5fb06-d0db-476d-ab24-9362bd3fbfaf" name="S__3_Hydroxydecanoyl__acyl_carrier_protein" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C21H39N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43O25P" hasOnlySubstanceUnits="true" id="M_EPS_XF_c" metaid="_4ec00c07-8dd8-42fd-8e51-fae404b3a71b" name="M_EPS_XF_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C26H43O25P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc2p_c" metaid="_88c71068-60b9-4b38-88fe-4ea34f0dac5a" name="Glycerol_2_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7O6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23O2" hasOnlySubstanceUnits="true" id="M_ddca_p" metaid="_4d96532d-03b0-4b58-887f-70241760ab8b" name="Dodecanoate__n_C12_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C12H23O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2S" hasOnlySubstanceUnits="true" id="M_hcys_L_c" metaid="_4cf57846-c9a4-42d7-9458-b50552789a85" name="L_Homocysteine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H9NO2S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14N2O5" hasOnlySubstanceUnits="true" id="M_thymd_c" metaid="_0ae5c203-0786-41f7-9cc0-7b9349cf63a2" name="Thymidine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H14N2O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Cl" hasOnlySubstanceUnits="true" id="M_cl_p" metaid="a85023b1-6044-4628-88e4-6505990be08b" name="Chloride" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Cl</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HSR" hasOnlySubstanceUnits="true" id="M_sufse_c" metaid="c65b45a3-b9bd-4356-be1d-95a6ad9649b2" name="M_sufse_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HSR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O7P" hasOnlySubstanceUnits="true" id="M_3pg_c" metaid="_7c850fdc-7ee4-4131-8713-1c4e7db33ef9" name="3_Phospho_D_glycerate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H4O7P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="RH2" hasOnlySubstanceUnits="true" id="M_etfrd_c" metaid="bc7d1494-f2e3-4392-a6b4-20e2abdfe54f" name="Electron_transfer_flavoprotein_reduced" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: RH2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49N2O9PRS" hasOnlySubstanceUnits="true" id="M_3opalmACP_c" metaid="d03ccd95-0ad8-40a6-99ec-cff5d909c168" name="3_Oxohexadecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C27H49N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38N7O18P3S" hasOnlySubstanceUnits="true" id="M_r3hbcoa_c" metaid="_7091ffad-7925-4b77-97de-67b2358b790e" name="R__3_Hydroxybutanoyl_CoA" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C25H38N7O18P3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H21N5O14P2" hasOnlySubstanceUnits="true" id="M_adprib_c" metaid="_8447d936-9b96-4794-adad-6e64e8be25e9" name="ADPribose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15H21N5O14P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H25N3O17P2" hasOnlySubstanceUnits="true" id="M_uacmam_c" metaid="_87ee04d6-6c04-42fb-99a4-635593f51ae1" name="UDP_N_acetyl_D_mannosamine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C17H25N3O17P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N2O16P2" hasOnlySubstanceUnits="true" id="M_udpxyl_c" metaid="_121290d7-eee1-43b4-9cc3-5cac99592dba" name="UDP_D_xylose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C14H20N2O16P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H105N2O20P" hasOnlySubstanceUnits="true" id="M_lipidAds_XF_c" metaid="fdd44c49-62fd-40fe-a8f0-de3f2a5cf27f" name="M_lipidAds_XF_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C56H105N2O20P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6" hasOnlySubstanceUnits="true" id="M_acgam_c" metaid="_929cca87-4c08-439f-8e38-8d760db037eb" name="N_Acetyl_D_glucosamine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H15NO6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H44N6O15" hasOnlySubstanceUnits="true" id="M_anhm4p_c" metaid="_55dc95a9-9c90-4e47-ac05-b51200af8681" name="1_6_anhydrous_N_Acetylmuramyl_tetrapeptide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C29H44N6O15</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8NO2" hasOnlySubstanceUnits="true" id="M_ind3ac_c" metaid="c05f427b-cebf-48fc-881b-2db18a86688c" name="Indole_3_acetate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H8NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Cl" hasOnlySubstanceUnits="true" id="M_cl_e" metaid="_8de57525-7850-4331-955a-593d97aa5cd9" name="Chloride" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Cl</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8NO7P" hasOnlySubstanceUnits="true" id="M_phthr_c" metaid="_688ae74e-7e6c-444f-8ac7-ef9a56c07efc" name="O_Phospho_4_hydroxy_L_threonine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H8NO7P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H41N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hcddec5eACP_c" metaid="e8ad6c5c-ffcf-4c14-bf13-617ce96feeaa" name="R__3_hydroxy_cis_dodec_5_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C23H41N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H7NO4" hasOnlySubstanceUnits="true" id="M_thdp_c" metaid="_1b78ecb9-a1be-43a5-9061-6b31d460fca8" name="2_3_4_5_Tetrahydrodipicolinate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H7NO4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C73H140O17P2" hasOnlySubstanceUnits="true" id="M_clpn160_p" metaid="be613459-f8dd-4b09-893a-2559577ca2fe" name="cardiolipin__tetrahexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C73H140O17P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6" hasOnlySubstanceUnits="true" id="M_acgam_p" metaid="ebd83331-b18c-41b4-a44b-059dcf479c03" name="M_acgam_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H15NO6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H29N2O8PRS" hasOnlySubstanceUnits="true" id="M_thex2eACP_c" metaid="e378c6d1-fb50-4d2c-be3f-7d9d0026a9d0" name="trans_Hex_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C17H29N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H41N4O16" hasOnlySubstanceUnits="true" id="M_dscl_c" metaid="ea6c4aa1-cc4d-4ada-87f2-809ebb395fa8" name="dihydrosirohydrochlorin" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C42H41N4O16</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H127N2O32P3" hasOnlySubstanceUnits="true" id="M_phhlipidA_XF_c" metaid="c96f56b7-b608-43d3-a6a1-356c9ba4b3e0" name="M_phhlipidA_XF_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C70H127N2O32P3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N5O13P2S" hasOnlySubstanceUnits="true" id="M_paps_c" metaid="f209ccf7-0a4e-4739-a0cd-7b1df95736a6" name="3__Phosphoadenylyl_sulfate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H11N5O13P2S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5O2" hasOnlySubstanceUnits="true" id="M_bz_c" metaid="ae1c7a8d-8097-40e1-8dac-f56ed8b8c459" name="Benzoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H5O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O13P3" hasOnlySubstanceUnits="true" id="M_dgtp_c" metaid="_02b8aea4-dd62-45c1-8ee6-2ed83d65c1a7" name="dGTP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H12N5O13P3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H60O5" hasOnlySubstanceUnits="true" id="M_12dgr140_p" metaid="aba63d0f-24a8-409d-850d-51ff5ed4bb19" name="M_12dgr140_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C31H60O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10NO6P" hasOnlySubstanceUnits="true" id="M_pdx5p_c" metaid="_8c22f1f8-8834-4467-9706-e5cf85181be4" name="Pyridoxine_5__phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H10NO6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N5O8P1X" hasOnlySubstanceUnits="true" id="M_moadamp_c" metaid="_1673f815-08ff-48a9-a6c1-7fce124ac8f8" name="MoaD_Protein_with_bound_AMP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C11H12N5O8P1X</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5O2" hasOnlySubstanceUnits="true" id="M_bz_p" metaid="_4c50d908-be09-41cc-bd87-d9e77149cd86" name="M_bz_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H5O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O7P" hasOnlySubstanceUnits="true" id="M_dimp_c" metaid="_4847f1ea-fbe8-46a0-b954-d777099b14f5" name="dIMP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H11N4O7P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_r1p_c" metaid="c51fe663-a96c-4d5f-b044-fd55cadbf789" name="alpha_D_Ribose_1_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H9O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H42N3O18P2" hasOnlySubstanceUnits="true" id="M_u3hga_XF_c" metaid="_8688a4a6-3274-4c07-b155-4025fa339e4e" name="M_u3hga_XF_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C25H42N3O18P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O10P2" hasOnlySubstanceUnits="true" id="M_adp_c" metaid="_2c5d4c58-1d75-4ae1-885b-ca295055afa8" name="ADP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H12N5O10P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5O2" hasOnlySubstanceUnits="true" id="M_bz_e" metaid="_50d58e18-184f-4feb-a6bb-b7f585abcda2" name="M_bz_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H5O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C71H113N2O18P2" hasOnlySubstanceUnits="true" id="M_unagamu_c" metaid="_9d0cf216-7876-451e-a63a-64554bdc32c4" name="M_unagamu_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C71H113N2O18P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10NO2S" hasOnlySubstanceUnits="true" id="M_met_D_e" metaid="_0c467055-569b-4120-a154-eb8045b1652b" name="M_met_D_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H10NO2S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10NO2S" hasOnlySubstanceUnits="true" id="M_met_D_c" metaid="_4742ba11-749b-45ba-831f-6756fc3f2680" name="M_met_D_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H10NO2S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21N2O7PS" hasOnlySubstanceUnits="true" id="M_pan4p_c" metaid="b39ca11a-6517-469c-838a-d90ebfc77437" name="Pantetheine_4__phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C11H21N2O7PS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O9P" hasOnlySubstanceUnits="true" id="M_ump_c" metaid="_52592ef6-e980-4115-a0ce-3be62c414f22" name="UMP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H11N2O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O" hasOnlySubstanceUnits="true" id="M_hxan_p" metaid="_43301271-49c5-439a-b48c-343af7c883ec" name="Hypoxanthine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H4N4O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14NO9P" hasOnlySubstanceUnits="true" id="M_acgam1p_c" metaid="ee099462-057f-40f2-9318-435b77e02ac5" name="N_Acetyl_D_glucosamine_1_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H14NO9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C84H149N2O39P2" hasOnlySubstanceUnits="true" id="M_kdo2lipid4HL_XF_c" metaid="_5f10e95f-0f73-4cb4-86f8-a423a42e26b4" name="M_kdo2lipid4HL_XF_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C84H149N2O39P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnasecys_c" metaid="_43e9e8dc-27a9-45c7-a846-a9806ffc5900" name="tRNA_SeCys_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N2O15P2" hasOnlySubstanceUnits="true" id="M_dtdp4d6dg_c" metaid="c3c4a7d9-e30f-4081-a77a-b0f5247d5e59" name="dTDP_4_dehydro_6_deoxy_D_glucose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C16H22N2O15P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H39N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ocddec5eACP_c" metaid="c3249e6e-3844-464e-912b-eaffa32b9b2e" name="3_oxo_cis_dodec_5_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C23H39N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H56O3" hasOnlySubstanceUnits="true" id="M_2hpmhobq_c" metaid="e92b21fa-04e6-4466-8e88-54b6da43b2ec" name="2_Hexaprenyl_3_methyl_6_methoxy_1_4_benzoquinone" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C38H56O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3" hasOnlySubstanceUnits="true" id="M_gln_L_c" metaid="f4a97e17-4cd4-4c44-a820-68d123b6536e" name="L_Glutamine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H10N2O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3" hasOnlySubstanceUnits="true" id="M_gln_L_e" metaid="cb3178e8-82df-4bfc-9bd3-2225d4f2deae" name="L_Glutamine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H10N2O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H33O2" hasOnlySubstanceUnits="true" id="M_ocdcea_e" metaid="c49ceefe-cbb1-4c1f-b2c9-7d2be26c1725" name="octadecenoate__n_C18_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C18H33O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H70O10P1" hasOnlySubstanceUnits="true" id="M_pg161_c" metaid="_30287bb9-8205-4e45-936c-6b7ff079fb61" name="Phosphatidylglycerol__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C38H70O10P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H33O2" hasOnlySubstanceUnits="true" id="M_ocdcea_c" metaid="_80627c1f-2ab2-4b5e-b9ee-f3bace1053ad" name="M_ocdcea_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C18H33O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HS2R" hasOnlySubstanceUnits="true" id="M_sufsesh_c" metaid="_8a50d7ae-12e1-458b-bca1-41d50528128f" name="M_sufsesh_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HS2R</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H41O7P1" hasOnlySubstanceUnits="true" id="M_1odecg3p_c" metaid="bc7afb5b-a544-4ac5-b596-28d4f53b5a73" name="1_octadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C21H41O7P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O10PS" hasOnlySubstanceUnits="true" id="M_aps_c" metaid="e8f644aa-cf4e-4851-9b52-524f55800b88" name="Adenosine_5__phosphosulfate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H12N5O10PS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Cl" hasOnlySubstanceUnits="true" id="M_cl_c" metaid="_460e0853-51f1-4911-9939-66ee68043783" name="Chloride" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Cl</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Cu" hasOnlySubstanceUnits="true" id="M_cu2_e" metaid="fa22814a-ff48-4484-925b-60b9d589e426" name="Copper_2_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Cu</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10NO2S" hasOnlySubstanceUnits="true" id="M_met_D_p" metaid="_29bc905d-471c-422d-ac52-fb6b64907c9f" name="M_met_D_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H10NO2S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Cu" hasOnlySubstanceUnits="true" id="M_cu2_c" metaid="_7f917db6-f623-4384-ae7d-b478ab60e6e9" name="Copper_2_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Cu</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O" hasOnlySubstanceUnits="true" id="M_hxan_c" metaid="d2e6ca98-7ed8-4c5b-9b61-fdd33de2e076" name="Hypoxanthine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H4N4O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H54N7O17P3S" hasOnlySubstanceUnits="true" id="M_ddcacoa_c" metaid="_108bae10-3aa7-4e54-955e-3f76398c8f5c" name="Dodecanoyl_CoA__n_C12_0CoA_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C33H54N7O17P3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H70O10P1" hasOnlySubstanceUnits="true" id="M_pg161_p" metaid="_40f2b6ec-e609-48b0-a490-7f91812458f9" name="Phosphatidylglycerol__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C38H70O10P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3" hasOnlySubstanceUnits="true" id="M_gln_L_p" metaid="_11575be7-e27d-4ba4-b151-c5045e19fccd" name="L_Glutamine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H10N2O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Cu" hasOnlySubstanceUnits="true" id="M_cu2_p" metaid="_4a0f9fdb-ba9d-4617-b1f5-84637d786267" name="Copper_2_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Cu</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H33O2" hasOnlySubstanceUnits="true" id="M_ocdcea_p" metaid="accd4a8b-5987-440e-a077-9adbb463d0ea" name="octadecenoate__n_C18_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C18H33O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O" hasOnlySubstanceUnits="true" id="M_hxan_e" metaid="aad41c36-39a2-4627-9de3-54ebb9a099c0" name="Hypoxanthine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H4N4O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H55N2O8PRS" hasOnlySubstanceUnits="true" id="M_ocdcaACP_c" metaid="a99cb6e9-3d7b-4418-8e12-3e3eadb5e4ac" name="Octadecanoyl_ACP__n_C18_0ACP_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C29H55N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H67N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdtdec7eg_c" metaid="cfed38fb-a6aa-4c04-925b-a8ddecbef47f" name="CDP_1_2_ditetradec_7_enoylglycerol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C40H67N3O15P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O7P" hasOnlySubstanceUnits="true" id="M_2pg_c" metaid="e70b8811-d6b0-4409-805b-b6cb4cbcc792" name="D_Glycerate_2_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H4O7P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H22N2O17P2" hasOnlySubstanceUnits="true" id="M_udpgal_c" metaid="ca9477b5-955c-4986-8dda-a59e550e5e7a" name="UDPgalactose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15H22N2O17P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H29N2O10PRS" hasOnlySubstanceUnits="true" id="M_gmeACP_c" metaid="ddead12e-825c-49d7-aabf-988f35133766" name="Glutaryl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C17H29N2O10PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_inost_p" metaid="bdbe4468-697b-4df1-8745-7da05a39e022" name="myo_Inositol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H12O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H81N1O10P1" hasOnlySubstanceUnits="true" id="M_ps180_c" metaid="_8df23e87-1dbe-4a1a-aad2-a2499978d7bb" name="phosphatidylserine__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C42H81N1O10P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O2" hasOnlySubstanceUnits="true" id="M_thym_c" metaid="_78dcf97b-b64a-4383-8155-483beeb01f07" name="Thymine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H6N2O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12NO6P" hasOnlySubstanceUnits="true" id="M_3ig3p_c" metaid="_4794eeab-2b3a-4e86-947e-a3668dd50e19" name="C___3_Indolyl__glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C11H12NO6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H64N7O17P3S" hasOnlySubstanceUnits="true" id="M_odecoa_c" metaid="_09cf7336-e84b-4f05-badd-7be76bcbabe8" name="Octadecenoyl_CoA__n_C18_1CoA_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C39H64N7O17P3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N3O6S" hasOnlySubstanceUnits="true" id="M_gthrd_c" metaid="_6d318b97-a47e-49aa-87cc-3ad6fb676344" name="Reduced_glutathione" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H16N3O6S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H4O2S10Fe4R" hasOnlySubstanceUnits="true" id="M_sufbcd_4fe4s_c" metaid="ef85ce8a-599c-49c2-b934-52d0e2f16d6c" name="M_sufbcd_4fe4s_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: H4O2S10Fe4R</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C68H104N12O38" hasOnlySubstanceUnits="true" id="M_murein3p3p_p" metaid="_9933264b-e15a-4ed1-a4f0-f4fc7c227565" name="two_linked_disacharide_tripeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C68H104N12O38</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H31O7P1" hasOnlySubstanceUnits="true" id="M_1tdec7eg3p_c" metaid="ab977643-263a-4a03-a254-bb852121a6e2" name="1_tetradec_7_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C17H31O7P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2" hasOnlySubstanceUnits="true" id="M_4abut_e" metaid="_83f27303-75f4-4d6e-8ac2-28eeb19db871" name="4_Aminobutanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H9NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3" hasOnlySubstanceUnits="true" id="M_5aop_c" metaid="a32ed875-f60f-4312-961c-01fc0b55d16b" name="5_Amino_4_oxopentanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H9NO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O2" hasOnlySubstanceUnits="true" id="M_thym_p" metaid="b8c96569-55bb-4c39-bfb6-94c7bdf53eda" name="M_thym_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H6N2O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O1" hasOnlySubstanceUnits="true" id="M_meoh_e" metaid="a3aecd07-6bf3-464b-8ac1-bdd59da7f49e" name="Methanol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: CH4O1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O1" hasOnlySubstanceUnits="true" id="M_meoh_c" metaid="_9890bb12-45ac-4f4d-a19a-fc811557ae3c" name="Methanol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: CH4O1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O3" hasOnlySubstanceUnits="true" id="M_dad_2_c" metaid="_90683926-b866-41fe-80c1-98babccbacf6" name="Deoxyadenosine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H13N5O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H78O10P1" hasOnlySubstanceUnits="true" id="M_pg181_c" metaid="_8f92af48-2761-440e-9022-9d3fa1cbc681" name="Phosphatidylglycerol__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C42H78O10P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2" hasOnlySubstanceUnits="true" id="M_4abut_c" metaid="b71769b5-a14b-48f8-91d0-88bb3d343059" name="4_Aminobutanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H9NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O2" hasOnlySubstanceUnits="true" id="M_thym_e" metaid="_7f85071a-6a4f-43db-9823-8a031f2c7d41" name="M_thym_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H6N2O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H33N2O11PRS" hasOnlySubstanceUnits="true" id="M_hpmeACP_c" metaid="_94c28444-1421-443a-aba2-0691b5acec37" name="3_Hydroxypimeloyl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C19H33N2O11PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H112N14O39" hasOnlySubstanceUnits="true" id="M_murein4px4p_p" metaid="eeb327c2-4345-4f36-91b1-60518942ab25" name="two_disacharide_linked_murein_units__tetrapeptide_corsslinked_tetrapeptide__A2pm__D_ala___middle_of_chain_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C74H112N14O39</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2" hasOnlySubstanceUnits="true" id="M_4abut_p" metaid="_7bbf70a8-f779-47ec-a17e-4c489edf91d3" name="4_Aminobutanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H9NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O1" hasOnlySubstanceUnits="true" id="M_meoh_p" metaid="d5cde6e6-4478-4de3-a0a9-0fef3954603c" name="Methanol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: CH4O1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H78O10P1" hasOnlySubstanceUnits="true" id="M_pg181_p" metaid="_12290258-af5c-47c1-979d-c45053f67323" name="Phosphatidylglycerol__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C42H78O10P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H37N2O8PRS" hasOnlySubstanceUnits="true" id="M_tdec2eACP_c" metaid="b40796b5-d9da-41e2-8108-7ab4fac80089" name="trans_Dec_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C21H37N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H72O2" hasOnlySubstanceUnits="true" id="M_2omph_c" metaid="_50c8fd8a-0b8d-4b9d-9f3f-7e73939896c7" name="2_Octaprenyl_6_methoxyphenol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C47H72O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H33N7O13P2S" hasOnlySubstanceUnits="true" id="M_dpcoa_c" metaid="_2114affe-c062-4904-a403-daf62352e50a" name="Dephospho_CoA" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C21H33N7O13P2S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="K" hasOnlySubstanceUnits="true" id="M_k_p" metaid="_215c8043-9dff-438d-a258-cec5f2bc47ac" name="potassium" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: K</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5NO4" hasOnlySubstanceUnits="true" id="M_23dhdp_c" metaid="_752884b5-3ccf-4ce5-b928-ef740b225ab0" name="2_3_Dihydrodipicolinate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H5NO4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11" hasOnlySubstanceUnits="true" id="M_lcts_p" metaid="f961f514-f854-4ab7-a243-2b378a11a89f" name="M_lcts_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C12H22O11</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H15N5O3S" hasOnlySubstanceUnits="true" id="M_5mta_c" metaid="cbac2a4e-49f7-48a8-9add-029ce811ba89" name="5_Methylthioadenosine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C11H15N5O3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H77O13P2" hasOnlySubstanceUnits="true" id="M_pgp181_c" metaid="_5f9ad7b0-8d3c-43cf-8a33-90e1eb710e57" name="Phosphatidylglycerophosphate__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C42H77O13P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H16N4O7P2S" hasOnlySubstanceUnits="true" id="M_thmpp_c" metaid="_30903d62-892f-48e3-a1c0-6b6a72280043" name="Thiamine_diphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C12H16N4O7P2S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O7P" hasOnlySubstanceUnits="true" id="M_amp_c" metaid="_4fe6c29c-fecf-470c-be2a-a9bcf8656833" name="AMP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H12N5O7P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H60O5" hasOnlySubstanceUnits="true" id="M_12dgr140_c" metaid="_7e1e6be4-b6d5-4044-b0b9-2f04b2bea97a" name="1_2_Diacyl_sn_glycerol__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C31H60O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2R" hasOnlySubstanceUnits="true" id="M_sertrna_c" metaid="_81f93249-c898-454e-98bd-866ce601f5ba" name="L_Seryl_tRNA_Ser_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7NO2R</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H33N9O15P2" hasOnlySubstanceUnits="true" id="M_fadh2_c" metaid="_4041656b-e412-49f4-b816-7600ed0651ee" name="Flavin_adenine_dinucleotide_reduced" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C27H33N9O15P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11" hasOnlySubstanceUnits="true" id="M_lcts_c" metaid="_37a5c5d2-2f41-4400-b1e7-bcba04bb38d5" name="M_lcts_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C12H22O11</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N5O13P3" hasOnlySubstanceUnits="true" id="M_ahdt_c" metaid="_5035af71-197d-41f9-aa74-443f3358baaf" name="2_Amino_4_hydroxy_6__erythro_1_2_3_trihydroxypropyl_dihydropteridine_triphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H12N5O13P3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O14P3" hasOnlySubstanceUnits="true" id="M_dutp_c" metaid="_80fe83ce-be12-4f96-a6f6-a17511a22de4" name="dUTP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H11N2O14P3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H37N2O9PRS" hasOnlySubstanceUnits="true" id="M_3odecACP_c" metaid="a34c0d26-e907-4875-baf3-7229d06e1f16" name="3_Oxodecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C21H37N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO8P" hasOnlySubstanceUnits="true" id="M_gam6p_c" metaid="f0da3ccb-33da-4fb1-ac90-d48b92df0746" name="D_Glucosamine_6_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H13NO8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H77O13P2" hasOnlySubstanceUnits="true" id="M_pgp181_p" metaid="af1769b8-8aed-4c2c-a532-e2aab8ffd559" name="Phosphatidylglycerophosphate__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C42H77O13P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H21N5O15P2" hasOnlySubstanceUnits="true" id="M_prfp_c" metaid="fa867997-62a0-40f2-99a3-cf71a1fa8319" name="1__5_Phosphoribosyl__5___5_phosphoribosylamino_methylideneamino_imidazole_4_carboxamide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15H21N5O15P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O4" hasOnlySubstanceUnits="true" id="M_succ_c" metaid="_474e6990-28d1-4ec8-9f01-356e9e7060cd" name="Succinate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H4O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO8P" hasOnlySubstanceUnits="true" id="M_g3ps_p" metaid="_4f51406a-ef1b-4d16-9d37-94c2adea606c" name="Glycerophosphoserine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H13NO8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O4" hasOnlySubstanceUnits="true" id="M_succ_p" metaid="_37f6347d-7051-42e9-a560-40c4bf52c173" name="Succinate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H4O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_gal_p" metaid="fa6238b5-6319-4f16-8851-65f593e11a36" name="D_Galactose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H12O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N3O6S" hasOnlySubstanceUnits="true" id="M_gthrd_e" metaid="f6eae696-19ab-4dd8-af09-37528a564931" name="Reduced_glutathione" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H16N3O6S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N3O6S" hasOnlySubstanceUnits="true" id="M_gthrd_p" metaid="a9635167-b7c7-4115-a2fa-95aa4914a33b" name="Reduced_glutathione" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H16N3O6S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C63H116N2O29P2" hasOnlySubstanceUnits="true" id="M_hlipidA_XF_c" metaid="cde26a11-d4db-4032-a434-28c5ec93113f" name="M_hlipidA_XF_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C63H116N2O29P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H50N7O17P3S" hasOnlySubstanceUnits="true" id="M_dcacoa_c" metaid="_793f8d72-7a4d-47d7-98e2-bcbb112cd0b2" name="Decanoyl_CoA__n_C10_0CoA_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C31H50N7O17P3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_gal_c" metaid="_9ba9d16d-988a-4711-970f-57a94cce6ea5" name="D_Galactose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H12O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_gal_e" metaid="_52e47f01-5ef5-4afe-bfda-be27bfeca562" name="D_Galactose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H12O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="K" hasOnlySubstanceUnits="true" id="M_k_c" metaid="_232f0d8c-8b0a-4749-a7ca-5d12734bd206" name="potassium" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: K</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5O3" hasOnlySubstanceUnits="true" id="M_2obut_c" metaid="ee189109-cd3b-4543-81a6-b72eefb96c9d" name="2_Oxobutanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H5O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO8P" hasOnlySubstanceUnits="true" id="M_g3ps_c" metaid="_40067cd7-167d-4fba-a233-0883aa18794d" name="Glycerophosphoserine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H13NO8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5N3O" hasOnlySubstanceUnits="true" id="M_csn_c" metaid="_0a157836-f6dd-476a-b4fb-6fe5231d5451" name="Cytosine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H5N3O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="K" hasOnlySubstanceUnits="true" id="M_k_e" metaid="_806bd4c5-c3bb-413a-bf66-963a22bfb2f4" name="potassium" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: K</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO8P" hasOnlySubstanceUnits="true" id="M_g3ps_e" metaid="_9df4095e-2177-43b9-b941-0114c6f850c6" name="Glycerophosphoserine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H13NO8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O7P2" hasOnlySubstanceUnits="true" id="M_ipdp_c" metaid="_57069a2f-f263-4d87-b32a-03f2a90a3ce3" name="Isopentenyl_diphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H9O7P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H23N2O8PRS" hasOnlySubstanceUnits="true" id="M_acACP_c" metaid="_7a08b1a3-ec7b-4b70-acd9-8907b1ab9e9f" name="Acetyl_ACP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C13H23N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C111H167N21O58" hasOnlySubstanceUnits="true" id="M_murein4px4px4p_p" metaid="_7034283c-795d-4c7c-8dd9-c73ebfa3af89" name="three_disacharide_linked_murein_units__tetrapeptide_crosslinked_tetrapeptide__A2pm__D_ala____tetrapeptide_corsslinked_tetrapeptide__A2pm__D_ala____middle_of_chain_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C111H167N21O58</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H54FeN4O6" hasOnlySubstanceUnits="true" id="M_hemeA_1_c" metaid="_8dafc607-8c60-4144-bb61-e69d7933af41" name="M_hemeA_1_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C49H54FeN4O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3" hasOnlySubstanceUnits="true" id="M_glyald_c" metaid="_99315983-b783-4d15-a64c-bb7c50508372" name="D_Glyceraldehyde" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H6O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O5" hasOnlySubstanceUnits="true" id="M_mal_D_e" metaid="_3f836984-888d-442d-a80d-124ea9653d5e" name="M_mal_D_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H4O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3" hasOnlySubstanceUnits="true" id="M_glyald_e" metaid="_52131b8a-027f-4a1b-b1dc-4307a0d9d7c4" name="M_glyald_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H6O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="HCO3" hasOnlySubstanceUnits="true" id="M_hco3_p" metaid="_73857529-3fa7-459d-b32c-74dc47eeba72" name="M_hco3_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HCO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O5" hasOnlySubstanceUnits="true" id="M_mal_D_p" metaid="b66491f9-b558-456f-84fe-f45205b1a417" name="M_mal_D_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H4O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N3O6SSe" hasOnlySubstanceUnits="true" id="M_gslnt_c" metaid="f5b6bdf7-9148-4ce7-bd50-24127c890289" name="M_gslnt_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H16N3O6SSe</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5N5O" hasOnlySubstanceUnits="true" id="M_preq0_c" metaid="b309cee8-6e97-4114-96bd-93c5d0ba25cb" name="7_cyano_7_carbaguanine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H5N5O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O5" hasOnlySubstanceUnits="true" id="M_mal_D_c" metaid="_458861eb-3197-4592-90fe-ca6bd9aa0f88" name="M_mal_D_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H4O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O9P" hasOnlySubstanceUnits="true" id="M_6pgl_c" metaid="ee88dbde-4073-4637-b00b-0767b52d584b" name="6_phospho_D_glucono_1_5_lactone" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H9O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H3O6" hasOnlySubstanceUnits="true" id="M_acon_C_c" metaid="_983551f4-31f2-4080-ae0b-846e98ef4a74" name="cis_Aconitate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H3O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_R_L_c" metaid="ed0f82b6-0a1a-4986-a913-e2835731af7d" name="L_methionine_R_sulfoxide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H11NO3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O2R" hasOnlySubstanceUnits="true" id="M_asntrna_c" metaid="ee82cb7d-b294-4e8f-bcbd-9d89b010173f" name="L_Asparaginyl_tRNA_Asn_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H8N2O2R</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_R_L_e" metaid="d6df6cfa-f5fd-4e6a-bb9f-54c0f495e3fd" name="M_metsox_R_L_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H11NO3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H18N4O6" hasOnlySubstanceUnits="true" id="M_dmlz_c" metaid="cb34b92e-e342-4791-b821-d9e212d8605d" name="6_7_Dimethyl_8__1_D_ribityl_lumazine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C13H18N4O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Zn" hasOnlySubstanceUnits="true" id="M_zn2_e" metaid="_4a556ba2-0ee3-43e7-a4f8-7546de1ffafa" name="Zinc" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Zn</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H7O4" hasOnlySubstanceUnits="true" id="M_34hpp_c" metaid="c9300efc-7e75-456f-b6a3-aea4c65b139d" name="3__4_Hydroxyphenyl_pyruvate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H7O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="RCu11" hasOnlySubstanceUnits="true" id="M_11cu2s_CopA_p" metaid="_997bc6c2-f19f-44e1-b525-322eb1f375bb" name="Protein_CopA_bounded_to_11_atoms_of_copper" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: RCu11</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Zn" hasOnlySubstanceUnits="true" id="M_zn2_c" metaid="_1fb155a7-e27d-4f0f-8fb7-10e208dcab56" name="Zinc" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Zn</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H12NO6" hasOnlySubstanceUnits="true" id="M_suchms_c" metaid="_3f394db0-1c6a-4775-9589-e5b9a86fe816" name="M_suchms_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H12NO6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Zn" hasOnlySubstanceUnits="true" id="M_zn2_p" metaid="_3f542a6b-e6f5-429b-a313-c9d62a9fe0c9" name="Zinc" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Zn</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H7N2O5P" hasOnlySubstanceUnits="true" id="M_imacp_c" metaid="aabf93be-f89c-4836-a9ec-ea62f62bbbc9" name="3__Imidazol_4_yl__2_oxopropyl_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H7N2O5P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" hasOnlySubstanceUnits="true" id="M_na1_e" metaid="_83d73a25-8317-4dca-910b-370f23535b9c" name="Sodium" sboTerm="SBO:0000240"/> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7N4O4" hasOnlySubstanceUnits="true" id="M_alltt_c" metaid="eee9822b-fa76-413e-9f94-233797c284c6" name="Allantoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H7N4O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" hasOnlySubstanceUnits="true" id="M_na1_c" metaid="_4c0b1829-431b-453e-a0be-2f3caf81bfe3" name="Sodium" sboTerm="SBO:0000240"/> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13O8" hasOnlySubstanceUnits="true" id="M_kdo_c" metaid="_83255d96-44c0-4eac-9047-d321d1883508" name="3_Deoxy_D_manno_2_octulosonate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H13O8</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO4" hasOnlySubstanceUnits="true" id="M_4hthr_c" metaid="_2f970658-3405-49d2-827e-cda31ac3c580" name="M_4hthr_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H9NO4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H37O7P" hasOnlySubstanceUnits="true" id="M_1hdecg3p_c" metaid="e94be5d7-f496-4f2a-8593-3bcfc9c2d1ce" name="1_hexadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C19H37O7P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" hasOnlySubstanceUnits="true" id="M_na1_p" metaid="_67530b6e-a8f1-458c-b939-90f3fc424138" name="Sodium" sboTerm="SBO:0000240"/> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H41N2O8PRS" hasOnlySubstanceUnits="true" id="M_cddec5eACP_c" metaid="_7d9bf15a-c064-4218-a701-d71b4206b45f" name="cis_dodec_5_enoyl__acyl_carrier_protein___n_C12_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C23H41N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15NO8P" hasOnlySubstanceUnits="true" id="M_4ppan_c" metaid="_32fb951f-9d39-48a0-bf99-b42cd73fcf37" name="D_4__Phosphopantothenate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H15NO8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H18N2O16P2" hasOnlySubstanceUnits="true" id="M_udp4kp_c" metaid="_267c7469-631b-4806-b114-f73873b2ca8f" name="UDP_4_keto_pentose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C14H18N2O16P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12NO8" hasOnlySubstanceUnits="true" id="M_sl2a6o_c" metaid="c53714e9-99bf-443b-a309-9745c89bcdac" name="N_Succinyl_2_L_amino_6_oxoheptanedioate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C11H12NO8</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O7P" hasOnlySubstanceUnits="true" id="M_dgmp_c" metaid="_88eff2be-703f-4c42-9026-2053283954d6" name="dGMP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H12N5O7P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_R_L_p" metaid="_1a7ecca6-839c-43db-a508-6bb4abbdeec9" name="M_metsox_R_L_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H11NO3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H76O5" hasOnlySubstanceUnits="true" id="M_12dgr180_c" metaid="_912e1495-951c-4316-88ef-1f633ce29a60" name="1_2_Diacyl_sn_glycerol__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C39H76O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H16N4O6" hasOnlySubstanceUnits="true" id="M_4r5au_c" metaid="f669c91e-8061-44ca-aa0c-0aa962f5d915" name="4__1_D_Ribitylamino__5_aminouracil" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H16N4O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NOR" hasOnlySubstanceUnits="true" id="M_iletrna_c" metaid="_6b19678e-6701-474f-9abc-29755a992a42" name="L_Isoleucyl_tRNA_Ile_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H13NOR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H35N7O19P3S" hasOnlySubstanceUnits="true" id="M_succoa_c" metaid="_09209ea9-8108-4d26-8459-40fe64cf3fb6" name="Succinyl_CoA" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C25H35N7O19P3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H76O5" hasOnlySubstanceUnits="true" id="M_12dgr180_p" metaid="_00a128f5-2674-4f2d-8a4c-aeb6c8a5bc36" name="M_12dgr180_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C39H76O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_inost_e" metaid="_75ad0a0a-5032-4e7e-bb14-0333fceb16a6" name="myo_Inositol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H12O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N10O22P5" hasOnlySubstanceUnits="true" id="M_ap5a_c" metaid="_84f0382a-a19e-4f6c-9e95-ad5376ac7502" name="P1_P5_Bis_5__adenosyl__pentaphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C20H24N10O22P5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_inost_c" metaid="de6efc63-7434-4c4c-ae58-746a80de0478" name="myo_Inositol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H12O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hddecACP_c" metaid="_80a29bd8-d2b9-471b-bb2b-956596ab1831" name="R__3_Hydroxydodecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C23H43N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N7O6" hasOnlySubstanceUnits="true" id="M_5mthf_c" metaid="d2df0672-3e3e-4352-aada-dde3e5ab2c86" name="5_Methyltetrahydrofolate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C20H24N7O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3" hasOnlySubstanceUnits="true" id="M_glyald_p" metaid="_61ea2ba8-0f32-4126-96e8-4b79cae44de2" name="M_glyald_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H6O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HCO3" hasOnlySubstanceUnits="true" id="M_hco3_c" metaid="f323515f-6b4d-4f7b-9856-3eefd33b670e" name="Bicarbonate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HCO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O8P" hasOnlySubstanceUnits="true" id="M_gar_c" metaid="fd54baee-ee54-4189-b660-6d95f5456c1b" name="N1__5_Phospho_D_ribosyl_glycinamide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H14N2O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="HCO3" hasOnlySubstanceUnits="true" id="M_hco3_e" metaid="_61d939b1-ed1f-43ce-9e03-a4c08e8bc887" name="M_hco3_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HCO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H27N2O9PRS" hasOnlySubstanceUnits="true" id="M_3haACP_c" metaid="_033de923-3d72-446f-8bf6-1ceeaf457028" name="3R__3_Hydroxyacyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15H27N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3" hasOnlySubstanceUnits="true" id="M_dha_c" metaid="a0bfad08-cbfb-4f6d-806f-0f4ff1765afa" name="M_dha_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H6O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12O6" hasOnlySubstanceUnits="true" id="M_quin_e" metaid="bd99a476-4b2e-4522-a3e4-6f25d1489e01" name="M_quin_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H12O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4" hasOnlySubstanceUnits="true" id="M_adn_p" metaid="_7d39ad76-0d65-4592-89a3-0c21f052f029" name="Adenosine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H13N5O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4N2O" hasOnlySubstanceUnits="true" id="M_urea_c" metaid="_77223863-1562-4b4d-8f6e-dd771c950861" name="Urea" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: CH4N2O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H21N2O2" hasOnlySubstanceUnits="true" id="M_dann_c" metaid="_2352f11e-ba6f-4ddd-a073-d343b40a6112" name="7_8_Diaminononanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H21N2O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3" hasOnlySubstanceUnits="true" id="M_ser_D_c" metaid="aeb53456-a522-4845-a201-588cd0c2e42a" name="D_Serine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7NO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H75N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdhdec9eg_c" metaid="_43d30dbe-5f11-4ef3-953f-e8f9ea4f67b2" name="CDP_1_2_dihexadec_9_enoylglycerol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C44H75N3O15P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12O6" hasOnlySubstanceUnits="true" id="M_quin_p" metaid="_8fc5fa9f-9288-4b97-99a7-dff2a6505342" name="M_quin_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H12O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H16N2O7" hasOnlySubstanceUnits="true" id="M_sl26da_c" metaid="_41ef3c64-c064-4cd4-92ed-418079560801" name="N_Succinyl_LL_2_6_diaminoheptanedioate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C11H16N2O7</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O3S" hasOnlySubstanceUnits="true" id="M_dhmtp_c" metaid="ac881e6e-fec6-4756-b044-e561c508a25e" name="M_dhmtp_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H10O3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H68O5" hasOnlySubstanceUnits="true" id="M_12dgr160_c" metaid="_0afbc90f-9b1c-452c-8ad7-a4429280ce87" name="1_2_Diacyl_sn_glycerol__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C35H68O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_S_L_c" metaid="_16643f8f-c679-4729-9aa3-9f1f5f62564f" name="L_Methionine_Sulfoxide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H11NO3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O4" hasOnlySubstanceUnits="true" id="M_23dhmp_c" metaid="c4a26a7f-7396-4c9b-b382-953bea50f73f" name="R__2_3_Dihydroxy_3_methylpentanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H11O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_S_L_e" metaid="_49986ea5-6b53-4473-b693-50ce26c6e9e8" name="M_metsox_S_L_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H11NO3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4N2O" hasOnlySubstanceUnits="true" id="M_urea_p" metaid="_43c3bda0-062b-47b6-a12b-f30f608bbe0d" name="Urea" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: CH4N2O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H55O8P1" hasOnlySubstanceUnits="true" id="M_pa141_c" metaid="c188f9da-a9ab-4218-9ddf-0a1bf83e6f7c" name="1_2_ditetradec_7_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C31H55O8P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO3R" hasOnlySubstanceUnits="true" id="M_asptrna_c" metaid="_1bc00e1f-f2fd-4a62-9bba-e097ba867cb0" name="L_Aspartyl_tRNA_Asp_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H6NO3R</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H7O3" hasOnlySubstanceUnits="true" id="M_3mob_c" metaid="_026bee60-b896-4ae9-ac99-18069021688d" name="3_Methyl_2_oxobutanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H7O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N5O7P" hasOnlySubstanceUnits="true" id="M_dhpmp_c" metaid="f228857b-3f2f-4b3f-83ca-0044dd00329f" name="M_dhpmp_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H12N5O7P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H25N5O16P2" hasOnlySubstanceUnits="true" id="M_adphep_LD_c" metaid="_043aff48-157c-40a7-820d-8b79c5d4c269" name="ADP_L_glycero_D_manno_heptose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C17H25N5O16P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H27O2" hasOnlySubstanceUnits="true" id="M_ttdca_c" metaid="_8193484f-1f9f-4cde-8c77-a264ef32b72c" name="tetradecanoate__n_C14_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C14H27O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_xylu_L_c" metaid="_9ea7f04a-68b4-4f04-b027-8a9a1d987e35" name="M_xylu_L_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H10O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H27O2" hasOnlySubstanceUnits="true" id="M_ttdca_e" metaid="_85bf543c-dbf3-40b8-aec0-f8867d1a9759" name="tetradecanoate__n_C14_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C14H27O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H55O8P1" hasOnlySubstanceUnits="true" id="M_pa141_p" metaid="f110f5d8-f27b-4fb9-86de-ac4db73ccf6d" name="1_2_ditetradec_7_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C31H55O8P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H62N7O17P3S" hasOnlySubstanceUnits="true" id="M_pmtcoa_c" metaid="a2492e1d-7658-447e-bc3f-6f124b6498ca" name="Palmitoyl_CoA__n_C16_0CoA_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C37H62N7O17P3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39N2O8PRS" hasOnlySubstanceUnits="true" id="M_dcaACP_c" metaid="_39d6026b-bd6c-43e1-819e-3e37a4d38279" name="Decanoyl_ACP__n_C10_0ACP_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C21H39N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4" hasOnlySubstanceUnits="true" id="M_adn_e" metaid="_06681255-ca55-4d6e-a318-5146048fe430" name="Adenosine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H13N5O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hcmrs7eACP_c" metaid="_991b9738-33dd-4908-9225-f410485a340b" name="R__3_hydroxy_cis_myristol_7_eoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C25H45N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O4" hasOnlySubstanceUnits="true" id="M_2dhp_c" metaid="_35e85121-8948-4271-b5da-3a8ee3131c50" name="2_Dehydropantoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H9O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4" hasOnlySubstanceUnits="true" id="M_adn_c" metaid="_7ee4933b-44b9-4ef3-b32f-6eb2879a4af8" name="Adenosine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H13N5O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12O6" hasOnlySubstanceUnits="true" id="M_quin_c" metaid="_0f6f353d-ba4b-494d-90c0-1ed3ad6ee4e1" name="M_quin_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H12O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H6O" hasOnlySubstanceUnits="true" id="M_etoh_c" metaid="e47016c7-19a2-4935-ab82-c5eb220b89d0" name="Ethanol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C2H6O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2" hasOnlySubstanceUnits="true" id="M_val_L_p" metaid="d9887695-6657-4c5f-bb99-08f7125c9e82" name="L_Valine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H11NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H70O" hasOnlySubstanceUnits="true" id="M_2oph_c" metaid="d49cb102-3bd8-47e0-bf24-9cfa84e5179e" name="2_Octaprenylphenol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C46H70O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2" hasOnlySubstanceUnits="true" id="M_val_L_c" metaid="e438fed2-aa4e-4393-abde-490c77c49a61" name="L_Valine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H11NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O" hasOnlySubstanceUnits="true" id="M_4ahmmp_c" metaid="ce138066-f4d6-4c15-9b02-8caddd0dff9e" name="4_Amino_5_hydroxymethyl_2_methylpyrimidine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H9N3O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2" hasOnlySubstanceUnits="true" id="M_val_L_e" metaid="_46ca55d5-b6be-4c78-9219-c02c32c4dc16" name="L_Valine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H11NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5" hasOnlySubstanceUnits="true" id="M_fuc_L_e" metaid="e73d084e-64bf-40b1-b7b4-945299e2f7c9" name="M_fuc_L_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H12O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H26N7O14P2" hasOnlySubstanceUnits="true" id="M_nad_c" metaid="bb1b199e-2969-485a-a88c-1ec5f0179d20" name="Nicotinamide_adenine_dinucleotide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C21H26N7O14P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5" hasOnlySubstanceUnits="true" id="M_fuc_L_c" metaid="_355a215d-4db8-4832-8fb8-ca1ab01f0eda" name="M_fuc_L_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H12O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="AsO3" hasOnlySubstanceUnits="true" id="M_aso3_c" metaid="_5453d5d0-a66b-49bb-b42a-eabca45bc40c" name="Arsenite" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: AsO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O9P" hasOnlySubstanceUnits="true" id="M_2ddg6p_c" metaid="_114fd6c5-31ba-4155-b85e-21f7a01dd1c9" name="M_2ddg6p_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H8O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C77H119N15O41" hasOnlySubstanceUnits="true" id="M_murein5p4p_p" metaid="_9dc1160f-ee56-4e10-a93c-c065af2fb172" name="two_linked_disacharide_pentapeptide_and_tetrapeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C77H119N15O41</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H27O2" hasOnlySubstanceUnits="true" id="M_ttdca_p" metaid="f632defc-455c-460e-8b73-ffab54254999" name="tetradecanoate__n_C14_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C14H27O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O7" hasOnlySubstanceUnits="true" id="M_5dglcn_c" metaid="d17cd973-347c-4f92-808f-f3db2829a900" name="5_Dehydro_D_gluconate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H9O7</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C81H156O17P2" hasOnlySubstanceUnits="true" id="M_clpn180_p" metaid="_070e315e-74cc-433c-867e-b5840ddb5f12" name="cardiolipin__tetraoctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C81H156O17P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10O5" hasOnlySubstanceUnits="true" id="M_3c2hmp_c" metaid="_177a430c-8868-472c-893e-1beb2488d67f" name="3_Carboxy_2_hydroxy_4_methylpentanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H10O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H22N3O15P2" hasOnlySubstanceUnits="true" id="M_udpLa4n_c" metaid="ce336872-4e86-448f-8eff-547a30ec3470" name="M_udpLa4n_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C14H22N3O15P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_S_L_p" metaid="fa47220e-2432-42c1-9b38-149e2ebb40e0" name="M_metsox_S_L_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H11NO3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H68O5" hasOnlySubstanceUnits="true" id="M_12dgr160_p" metaid="e162bccf-b25d-40c0-b12e-e97ff2edd2ff" name="M_12dgr160_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C35H68O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H53NO12P" hasOnlySubstanceUnits="true" id="M_lipidX_XF_c" metaid="b1c41bb2-0646-4bcc-9e04-a1133485d7d4" name="M_lipidX_XF_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C28H53NO12P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H36N2O11" hasOnlySubstanceUnits="true" id="M_novbcn_e" metaid="_47801743-fdfb-408d-a8a7-9787d1283699" name="novobiocin" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C31H36N2O11</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N3O9P" hasOnlySubstanceUnits="true" id="M_5caiz_c" metaid="_6c9e98ef-7d1e-44ce-b4a9-42c3263c2ab8" name="5_phosphoribosyl_5_carboxyaminoimidazole" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H11N3O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H6O" hasOnlySubstanceUnits="true" id="M_etoh_p" metaid="_83b31a68-c565-4434-910e-c0c6359fff49" name="M_etoh_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C2H6O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49N2O8PRS" hasOnlySubstanceUnits="true" id="M_tpalm2eACP_c" metaid="_22e5a1e3-e9c3-4ff0-90da-9ab71904dc41" name="trans_Hexadec_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C27H49N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N2O4" hasOnlySubstanceUnits="true" id="M_forglu_c" metaid="e0b032b0-6ff3-46ef-b5ab-71288f24bc8d" name="N_Formimidoyl_L_glutamate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H8N2O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12N2O3" hasOnlySubstanceUnits="true" id="M_progly_c" metaid="_691ebdf0-21c6-4598-a1ad-36baaae52159" name="M_progly_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H12N2O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H22N3O18P2" hasOnlySubstanceUnits="true" id="M_uacmamu_c" metaid="a6428724-467c-4601-8651-14050b290d18" name="UDP_N_acetyl_D_mannosaminouronate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C17H22N3O18P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO7P" hasOnlySubstanceUnits="true" id="M_pram_c" metaid="_85c62393-413d-4893-8c01-3c328c75978f" name="5_Phospho_beta_D_ribosylamine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H11NO7P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H43N3O19P2" hasOnlySubstanceUnits="true" id="M_u3aga_XF_c" metaid="bdcddf87-891e-48b4-ada6-61140f93ac48" name="M_u3aga_XF_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C27H43N3O19P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H36N2O11" hasOnlySubstanceUnits="true" id="M_novbcn_p" metaid="_352b1076-1234-4942-9297-1cd9f37bc16d" name="novobiocin" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C31H36N2O11</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14N4O4S2R4" hasOnlySubstanceUnits="true" id="M_trdrd_c" metaid="c0f2e38a-aeaf-4c60-9faa-7d994d090104" name="Reduced_thioredoxin" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H14N4O4S2R4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3OR" hasOnlySubstanceUnits="true" id="M_histrna_c" metaid="_46576463-2ab2-47d6-bc19-ece0396b696e" name="L_Histidyl_tRNA_His_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H9N3OR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H24N2O15P2" hasOnlySubstanceUnits="true" id="M_dtdprmn_c" metaid="_7248c5f2-5536-4fa6-8885-a1f09fd313f4" name="dTDP_L_rhamnose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C16H24N2O15P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2" hasOnlySubstanceUnits="true" id="M_pro_L_e" metaid="e5935128-9d10-4545-bc60-df7762d32050" name="L_Proline" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H9NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2" hasOnlySubstanceUnits="true" id="M_pro_L_c" metaid="_60cffd2a-0723-46c3-b847-76149ed8ba06" name="L_Proline" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H9NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O6" hasOnlySubstanceUnits="true" id="M_2ddglcn_c" metaid="_0c68e62b-a2ad-4ab3-a62d-59eea5cf7389" name="2_Dehydro_3_deoxy_D_gluconate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H9O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H71N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdtdecg_c" metaid="d172f13d-c895-4c2c-b6e8-bbe229008d13" name="CDP_1_2_ditetradecanoylglycerol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C40H71N3O15P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N5O17P4" hasOnlySubstanceUnits="true" id="M_ppgpp_c" metaid="fbbed2b2-bc7f-463e-8a61-dedfb2f17969" name="Guanosine_3__5__bis_diphosphate_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H11N5O17P4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O5" hasOnlySubstanceUnits="true" id="M_cytd_c" metaid="d7071268-659c-44cc-9d26-6f94bc593872" name="Cytidine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H13N3O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_ara5p_c" metaid="e94b938e-eac2-49a5-b775-b6b2ada4953a" name="D_Arabinose_5_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H9O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O10P2" hasOnlySubstanceUnits="true" id="M_dgdp_c" metaid="f40b6e12-896e-42da-ad86-290ed78876b0" name="dGDP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H12N5O10P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="R" hasOnlySubstanceUnits="true" id="M_etfox_c" metaid="_1d6c03df-9b36-4f17-99aa-1b3c105d8f19" name="Electron_transfer_flavoprotein_oxidized" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: R</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H35N2O8PRS" hasOnlySubstanceUnits="true" id="M_ocACP_c" metaid="a12506fc-a8d8-4489-83e9-6eca6690bad8" name="Octanoyl_ACP__n_C8_0ACP_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C19H35N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2" hasOnlySubstanceUnits="true" id="M_pro_L_p" metaid="_3aa4181e-df32-468a-996f-8ee889f22e76" name="L_Proline" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H9NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H14N5O11P" hasOnlySubstanceUnits="true" id="M_dcamp_c" metaid="_3e36d473-0360-46f6-bea3-6e69921f5b5d" name="N6__1_2_Dicarboxyethyl__AMP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C14H14N5O11P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O6" hasOnlySubstanceUnits="true" id="M_chor_c" metaid="_861501cd-bfaf-4379-af20-55f06b55f048" name="chorismate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H8O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H17NO11P" hasOnlySubstanceUnits="true" id="M_acmum6p_c" metaid="a7f2ca1c-7335-40a7-a4c9-40213dffd6c9" name="N_acetylmuramate_6_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C11H17NO11P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5O3" hasOnlySubstanceUnits="true" id="M_sucsal_c" metaid="_5bb109ef-224e-4128-9d2a-82069c112e24" name="Succinic_semialdehyde" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H5O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N2O3" hasOnlySubstanceUnits="true" id="M_alaala_p" metaid="_2b110650-1ab5-4691-97e0-2452fdb6ee7f" name="D_Alanyl_D_alanine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H12N2O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O4" hasOnlySubstanceUnits="true" id="M_dhmpt_c" metaid="_9d286888-17b3-45e3-8d35-29df68cb72e1" name="M_dhmpt_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H13N5O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="P2HO7" hasOnlySubstanceUnits="true" id="M_ppi_c" metaid="_86a426b1-c2d9-4c3c-93bc-3c02dc0df33f" name="Diphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: P2HO7</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O3" hasOnlySubstanceUnits="true" id="M_asn_L_c" metaid="b6b0aa02-7dd9-4612-be46-f310627219fa" name="L_Asparagine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H8N2O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10O10P" hasOnlySubstanceUnits="true" id="M_2dda7p_c" metaid="_3886d780-2882-46ea-a946-49d3ccb7923c" name="2_Dehydro_3_deoxy_D_arabino_heptonate_7_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H10O10P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H16N4" hasOnlySubstanceUnits="true" id="M_agm_p" metaid="_441bd501-469e-41d8-b5ad-a13ace02d988" name="M_agm_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H16N4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Co" hasOnlySubstanceUnits="true" id="M_cobalt2_c" metaid="_21744346-1c03-4851-8278-ffdcbdc40d47" name="Cobalt_Co2_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Co</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H33O7P" hasOnlySubstanceUnits="true" id="M_1tdecg3p_c" metaid="_3b77a3b0-f42e-4935-b884-401ffdffec0a" name="1_tetradecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C17H33O7P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Co" hasOnlySubstanceUnits="true" id="M_cobalt2_e" metaid="f70b5bb1-2240-48c1-a529-dd502abf1328" name="Cobalt_Co2_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Co</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N2O3" hasOnlySubstanceUnits="true" id="M_alaala_c" metaid="_9f439b98-142d-4805-8d78-4ff57bfc2251" name="D_Alanyl_D_alanine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H12N2O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Co" hasOnlySubstanceUnits="true" id="M_cobalt2_p" metaid="_374b1ce7-42eb-4fc3-a848-cd0b91f8727f" name="Cobalt_Co2_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Co</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hpalmACP_c" metaid="_591f9614-19ff-4312-b06f-e9a075408c77" name="R_3_hydroxypalmitoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C27H51N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H40N4O8" hasOnlySubstanceUnits="true" id="M_cpppg3_c" metaid="a0e3b7c5-adee-4995-8dcd-0f8e09571690" name="Coproporphyrinogen_III" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C36H40N4O8</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N4O9P" hasOnlySubstanceUnits="true" id="M_5apru_c" metaid="_88bc271c-57ea-4ef6-b7fa-972715ec43f4" name="5_Amino_6__5__phosphoribosylamino_uracil" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H13N4O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H27N2O8PRS" hasOnlySubstanceUnits="true" id="M_butACP_c" metaid="_17ce6730-5fbe-4b03-91a1-82b6ca8b65d1" name="Butyryl_ACP__n_C4_0ACP_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15H27N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7O2" hasOnlySubstanceUnits="true" id="M_pac_c" metaid="d0773256-1447-4dbc-aaf0-41ad8a833922" name="Phenylacetic_acid" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H7O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O6" hasOnlySubstanceUnits="true" id="M_pphn_c" metaid="eac503bd-6aef-46b3-9533-9b26f1f8c190" name="Prephenate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H8O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaile_c" metaid="e4d6442b-ae1e-436b-8f82-0baeedc19d5d" name="tRNA_Ile_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H87N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdodecg_c" metaid="_81e152a5-a783-4702-8f88-e73bf5766026" name="CDP_1_2_dioctadecanoylglycerol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C48H87N3O15P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5NO3" hasOnlySubstanceUnits="true" id="M_2amsa_c" metaid="_207bcba1-43b4-459f-a665-42b837a9ff00" name="2_Aminomalonate_semialdehyde" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H5NO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2" hasOnlySubstanceUnits="true" id="M_h2o2_p" metaid="_42b77eb6-d10c-45a7-ac8c-1518b2ee7787" name="Hydrogen_peroxide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: H2O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S" hasOnlySubstanceUnits="true" id="M_met_L_e" metaid="_26554b8f-fc5f-42e3-a5a2-22d5acae17b6" name="L_Methionine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H11NO2S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S" hasOnlySubstanceUnits="true" id="M_met_L_c" metaid="a5c2ad58-768a-4217-812c-eb0b377dc6d2" name="L_Methionine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H11NO2S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H17NO3" hasOnlySubstanceUnits="true" id="M_8aonn_c" metaid="_5e5dd73e-e9b3-4ad5-97e3-36dbba07eac7" name="8_Amino_7_oxononanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H17NO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H60N7O17P3S" hasOnlySubstanceUnits="true" id="M_hdcoa_c" metaid="ab7c9567-6b41-46ec-8ca0-9208c5931875" name="Hexadecenoyl_CoA__n_C16_1CoA_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C37H60N7O17P3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2" hasOnlySubstanceUnits="true" id="M_h2o2_e" metaid="_5cddf336-5581-454d-a420-15eb05f6f669" name="Hydrogen_peroxide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: H2O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9N5O2" hasOnlySubstanceUnits="true" id="M_6hmhpt_c" metaid="_099a49ea-bc36-4aa8-8ea5-7a5fc7abdd76" name="6_hydroxymethyl_dihydropterin" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H9N5O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2" hasOnlySubstanceUnits="true" id="M_h2o2_c" metaid="d3edff3f-0965-4524-988e-e012dd269a53" name="Hydrogen_peroxide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: H2O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H16N4" hasOnlySubstanceUnits="true" id="M_agm_c" metaid="e5d12b90-0e92-4296-99a1-4fa488158079" name="Agmatine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H16N4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H19N7O6" hasOnlySubstanceUnits="true" id="M_dhf_c" metaid="_0cdde813-73c0-4312-a5ac-3270f214d9dd" name="7_8_Dihydrofolate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C19H19N7O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H61N1O10P1" hasOnlySubstanceUnits="true" id="M_ps141_c" metaid="d979247f-71a8-407d-bc8e-9683a02c94fb" name="phosphatidylserine__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C34H61N1O10P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N2O4" hasOnlySubstanceUnits="true" id="M_ppbng_c" metaid="_59903941-7a27-49b5-a881-95339159efd4" name="Porphobilinogen" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H13N2O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Cu" hasOnlySubstanceUnits="true" id="M_cu_p" metaid="e8bcc9b6-666f-4fc5-85b6-a38ecd155920" name="Copper_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Cu</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28N3O19P2" hasOnlySubstanceUnits="true" id="M_uamr_c" metaid="_7aedc4d6-d209-4d7a-9c88-bdf456a7a1a8" name="UDP_N_acetylmuramate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C20H28N3O19P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H21N5O15P2" hasOnlySubstanceUnits="true" id="M_prlp_c" metaid="b905b0c2-fac2-411a-a2bf-d1590df284b5" name="5___5_phospho_1_deoxyribulos_1_ylamino_methylideneamino__1__5_phosphoribosyl_imidazole_4_carboxamide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15H21N5O15P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H38N7O19P3S" hasOnlySubstanceUnits="true" id="M_14dhncoa_c" metaid="_68633470-e8bf-451e-8dfd-33ed36f1747c" name="M_14dhncoa_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C32H38N7O19P3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_rib_D_p" metaid="_9b4632b8-c810-4aa9-bcef-4dd8c6dac22a" name="M_rib_D_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H10O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H1O10P3" hasOnlySubstanceUnits="true" id="M_pppi_c" metaid="_20ac260f-64a1-48ce-95b8-612167d825e9" name="Inorganic_triphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: H1O10P3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H74O4" hasOnlySubstanceUnits="true" id="M_q8_c" metaid="_713ced97-3ec8-4988-9d3e-4b6f02e22aeb" name="Ubiquinone_8" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C49H74O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_rib_D_c" metaid="b609e0d5-8769-49ee-af1c-6bd774cc1742" name="D_Ribose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H10O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_rib_D_e" metaid="_7fe4e843-8b2e-4a79-9c69-113790e3fbd3" name="M_rib_D_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H10O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H33N4O20P2" hasOnlySubstanceUnits="true" id="M_uama_c" metaid="e88b32e9-3ab7-4339-9dac-ee5d6103e7bd" name="UDP_N_acetylmuramoyl_L_alanine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C23H33N4O20P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O5" hasOnlySubstanceUnits="true" id="M_dkdepiins_c" metaid="_57aa188e-b0ff-4aa5-bf0a-0f5ade5ba851" name="D_2_3_diketo_4_deoxy_epi_inositol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H8O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9NO5" hasOnlySubstanceUnits="true" id="M_acglu_c" metaid="_71143921-2770-4402-81e5-ab47f3ce3c7c" name="N_Acetyl_L_glutamate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H9NO5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H112N14O39" hasOnlySubstanceUnits="true" id="M_murein5px3p_p" metaid="_9398569c-4242-4675-8c1e-cf6e06b7b4d5" name="two_disacharide_linked_murein_units__pentapeptide_corsslinked_tripeptide__A2pm__A2pm___middle_of_chain_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C74H112N14O39</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35O2" hasOnlySubstanceUnits="true" id="M_ocdca_p" metaid="_4270b066-041a-4f59-8667-d54dd587d40e" name="octadecanoate__n_C18_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C18H35O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H16N2" hasOnlySubstanceUnits="true" id="M_15dap_c" metaid="_39242362-797d-43b7-9196-266844627539" name="1_5_Diaminopentane" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H16N2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10NO5" hasOnlySubstanceUnits="true" id="M_4adcho_c" metaid="dfc3c1be-3f1c-46e7-baae-871822414165" name="4_amino_4_deoxychorismate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H10NO5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35O2" hasOnlySubstanceUnits="true" id="M_ocdca_c" metaid="_013a03d1-ca68-44fd-a28c-d3e27ab6b81b" name="octadecanoate__n_C18_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C18H35O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O8P" hasOnlySubstanceUnits="true" id="M_dump_c" metaid="_90502e6c-c63e-4585-872c-71a131527779" name="dUMP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H11N2O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35O2" hasOnlySubstanceUnits="true" id="M_ocdca_e" metaid="_01d7b1e3-4e48-4381-aa07-2bfafb8091e3" name="octadecanoate__n_C18_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C18H35O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S" hasOnlySubstanceUnits="true" id="M_met_L_p" metaid="_31660c24-6d1e-44f1-901e-9d1e1a6fd1bd" name="L_Methionine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H11NO2S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2" hasOnlySubstanceUnits="true" id="M_phe_L_c" metaid="efb6a520-6566-47f5-97e2-6b479ac974a7" name="L_Phenylalanine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H11NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8N2" hasOnlySubstanceUnits="true" id="M_ind3acnl_c" metaid="_8f6328bd-b54a-481c-ae9a-d62bbec59141" name="Indole_3_acetonitrile" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H8N2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO8P" hasOnlySubstanceUnits="true" id="M_gam1p_c" metaid="d5721ea7-3c6b-4522-af59-b79d2ccc5ea0" name="D_Glucosamine_1_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H13NO8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H70O2" hasOnlySubstanceUnits="true" id="M_2ohph_c" metaid="_0fdfb462-13a9-4101-9ec0-697b8a86cb64" name="2_Octaprenyl_6_hydroxyphenol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C46H70O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H78N1O8P1" hasOnlySubstanceUnits="true" id="M_pe181_c" metaid="fd43a421-7afe-430a-b14b-75d2b355a298" name="phosphatidylethanolamine__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C41H78N1O8P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N2O4" hasOnlySubstanceUnits="true" id="M_dhor_S_c" metaid="_421dc086-7ce2-4b8d-9030-1a5c923a7b2b" name="S__Dihydroorotate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H5N2O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O9P" hasOnlySubstanceUnits="true" id="M_6pddgluc_c" metaid="_2793caa9-dd17-4761-aa7a-a6efa7a36fac" name="6_phospho_5_dehydro_2_deoxy_D_gluconate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H8O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H21N7O6" hasOnlySubstanceUnits="true" id="M_thf_c" metaid="c7211891-9bf2-4e60-b017-af0d573d8261" name="5_6_7_8_Tetrahydrofolate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C19H21N7O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H78N1O8P1" hasOnlySubstanceUnits="true" id="M_pe181_p" metaid="_2b926724-e5fb-40cb-8651-d6b9e7712f48" name="phosphatidylethanolamine__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C41H78N1O8P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11" hasOnlySubstanceUnits="true" id="M_tre_p" metaid="bbc8cd77-7423-4cba-9801-a0333bfb5efe" name="Trehalose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C12H22O11</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H29NO11" hasOnlySubstanceUnits="true" id="M_doxrbcn_p" metaid="c38ad4b2-1917-4507-ac64-0f8d0800ea51" name="doxorubicin" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C27H29NO11</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H17N2O7P" hasOnlySubstanceUnits="true" id="M_5prdmbz_c" metaid="_31322133-ee94-4555-bdbc-0ce4d1fcaebc" name="N1__5_Phospho_alpha_D_ribosyl__5_6_dimethylbenzimidazole" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C14H17N2O7P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H37N2O8PRS" hasOnlySubstanceUnits="true" id="M_cdec3eACP_c" metaid="_55282680-fafe-4f12-a120-486dd25a84e0" name="cis_dec_3_enoyl__acyl_carrier_protein___n_C10_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C21H37N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H53N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hcvac11eACP_c" metaid="_9137c6a2-dc9d-4d8f-a838-f0326b61f795" name="R__3_hydroxy_cis_vacc_11_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C29H53N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H48O5" hasOnlySubstanceUnits="true" id="M_fusa_p" metaid="ff503e73-c9f2-4b3c-8775-6bc323cb4be2" name="fusidic_acid" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C31H48O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H31O2" hasOnlySubstanceUnits="true" id="M_hdca_e" metaid="_145ff66e-ac94-4a8c-a834-024f1c35ee98" name="Hexadecanoate__n_C16_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C16H31O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H23N3O14P2" hasOnlySubstanceUnits="true" id="M_4c2me_c" metaid="_294e9ce7-1a62-4f47-b794-aa14f1cd97c8" name="4__cytidine_5__diphospho__2_C_methyl_D_erythritol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C14H23N3O14P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H31O2" hasOnlySubstanceUnits="true" id="M_hdca_c" metaid="_10ffd07d-57bf-4f7b-ad24-9f3742897e53" name="Hexadecanoate__n_C16_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C16H31O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9O5" hasOnlySubstanceUnits="true" id="M_skm_c" metaid="f1c19d7a-3ba5-48c5-be9b-4107b1b8dced" name="Shikimate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H9O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO4" hasOnlySubstanceUnits="true" id="M_acser_c" metaid="_7a0e7d9e-ac6c-47c6-b80e-7cffd61fe6c4" name="O_Acetyl_L_serine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H9NO4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H58O10P1" hasOnlySubstanceUnits="true" id="M_pg120_c" metaid="_69cc85e7-8d6e-49ce-8b76-0e4e45449467" name="Phosphatidylglycerol__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C30H58O10P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H26N3O19P2" hasOnlySubstanceUnits="true" id="M_uaccg_c" metaid="_37ec534f-d7ca-48a3-9fe9-c7f96048cb01" name="UDP_N_acetyl_3_O__1_carboxyvinyl__D_glucosamine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C20H26N3O19P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H67O8P" hasOnlySubstanceUnits="true" id="M_pa160_p" metaid="fe0dbd2d-c340-4ad2-864f-963bfd9fe175" name="1_2_dihexadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C35H67O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H9O10P" hasOnlySubstanceUnits="true" id="M_3psme_c" metaid="d94b5739-b97f-4b86-8b80-835b55bdd053" name="5_O__1_Carboxyvinyl__3_phosphoshikimate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H9O10P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnacys_c" metaid="_90505ec1-a563-4122-bdd0-896e9288e5ad" name="tRNA_Cys_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H15N4O12P" hasOnlySubstanceUnits="true" id="M_25aics_c" metaid="c67d6700-c935-4ec0-9260-96c100b30df9" name="S__2__5_Amino_1__5_phospho_D_ribosyl_imidazole_4_carboxamido_succinate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C13H15N4O12P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H29NO11" hasOnlySubstanceUnits="true" id="M_doxrbcn_e" metaid="_0762590e-2935-478c-8104-b4a1dc326bcf" name="doxorubicin" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C27H29NO11</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O4" hasOnlySubstanceUnits="true" id="M_dhnpt_c" metaid="d54cfcb8-dc3a-4021-8796-53a7230eb806" name="Dihydroneopterin" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H13N5O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11" hasOnlySubstanceUnits="true" id="M_tre_e" metaid="b4805ee3-69b6-4e31-b5fb-2e3f0a9cb952" name="Trehalose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C12H22O11</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H31O2" hasOnlySubstanceUnits="true" id="M_hdca_p" metaid="cc21791b-825b-4982-8e9d-9dbe5e055551" name="Hexadecanoate__n_C16_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C16H31O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H3NO4" hasOnlySubstanceUnits="true" id="M_iasp_c" metaid="_93117f5e-0e6d-4a26-991c-2fbf5b7298c8" name="Iminoaspartate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H3NO4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H25N7O17P3" hasOnlySubstanceUnits="true" id="M_nadp_c" metaid="_7a21d41c-2527-4fa5-a89d-c0f684871ac8" name="Nicotinamide_adenine_dinucleotide_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C21H25N7O17P3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N4O8P" hasOnlySubstanceUnits="true" id="M_aicar_c" metaid="c365e5c7-e20c-491b-8600-054f09cfbd2e" name="5_Amino_1__5_Phospho_D_ribosyl_imidazole_4_carboxamide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H13N4O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_ile_L_p" metaid="_25731139-3702-4a6d-966c-ae4d0b79a88d" name="L_Isoleucine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H13NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O5" hasOnlySubstanceUnits="true" id="M_ins_c" metaid="fca9d728-c3db-4aac-a171-4b2fd1cc7a08" name="Inosine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H12N4O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O3Se" hasOnlySubstanceUnits="true" id="M_slnt_c" metaid="d8724f50-c723-4339-90c4-d760b6ff272a" name="M_slnt_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: O3Se</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_ile_L_e" metaid="_10d6d005-33ed-4b6a-9940-3b391a2db297" name="L_Isoleucine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H13NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="O3Se" hasOnlySubstanceUnits="true" id="M_slnt_e" metaid="_66b164a6-1705-494f-905b-2b68072c7e6c" name="M_slnt_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: O3Se</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H58O10P1" hasOnlySubstanceUnits="true" id="M_pg120_p" metaid="_8d2f2626-1dd2-4252-9ed9-0ebdb215520a" name="Phosphatidylglycerol__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C30H58O10P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_ru5p_D_c" metaid="_4e6d32d9-35cb-48cc-8b7c-551c09c7a4eb" name="D_Ribulose_5_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H9O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_ile_L_c" metaid="_29a7e4f6-5584-4bd6-b056-f1832a26f099" name="L_Isoleucine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H13NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H67O8P" hasOnlySubstanceUnits="true" id="M_pa160_c" metaid="_36623cd0-5efa-4a3e-a7e4-389e9e59611e" name="1_2_dihexadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C35H67O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25O7P2" hasOnlySubstanceUnits="true" id="M_frdp_c" metaid="_14d57c51-4548-451c-9235-2ad74a5f1456" name="Farnesyl_diphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15H25O7P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnahis_c" metaid="e909d795-209b-4437-8c01-081dddf99e02" name="tRNA_His_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H6NO2" hasOnlySubstanceUnits="true" id="M_anth_c" metaid="e755e642-5aa5-4644-a8cd-b64fe895b125" name="Anthranilate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H6NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="XH2" hasOnlySubstanceUnits="true" id="M_dsbard_p" metaid="b5ea8e0e-dfdc-41a2-b871-13f5e34057c4" name="periplasmic_protein_disulfide_isomerase_I__reduced_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: XH2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H57O13P2" hasOnlySubstanceUnits="true" id="M_pgp120_c" metaid="_06e4d779-1980-4ed0-888a-4a87b304bd3c" name="Phosphatidylglycerophosphate__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C30H57O13P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnamet_c" metaid="_11ed32e7-7671-4cb2-a6d8-003f716f0c48" name="tRNA_Met_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="O3Se" hasOnlySubstanceUnits="true" id="M_slnt_p" metaid="_9a371751-3fa6-44d4-80cd-fd9398bd2621" name="M_slnt_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: O3Se</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H51N7O26P2" hasOnlySubstanceUnits="true" id="M_ugmd_c" metaid="_6ce9d60d-b574-4192-be81-79aba1aa37bb" name="UDP_N_acetylmuramoyl_L_alanyl_D_gamma_glutamyl_meso_2_6_diaminopimelate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C35H51N7O26P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H57O13P2" hasOnlySubstanceUnits="true" id="M_pgp120_p" metaid="_9380ba53-3d75-46e5-a124-f315e5dc9226" name="Phosphatidylglycerophosphate__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C30H57O13P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C15668H28496N8O10693P8" hasOnlySubstanceUnits="true" id="M_OLPS_XF_p" metaid="_6b61be36-75b6-4cc1-b813-63b83b808e30" name="M_OLPS_XF_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15668H28496N8O10693P8</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H7O7" hasOnlySubstanceUnits="true" id="M_micit_c" metaid="_89b182bb-9101-4f1a-9c52-62f1a4245ea4" name="methylisocitrate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H7O7</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C15668H28496N8O10693P8" hasOnlySubstanceUnits="true" id="M_OLPS_XF_e" metaid="_6534f674-cebc-4996-91cd-7c83559f5d44" name="M_OLPS_XF_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15668H28496N8O10693P8</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P2" hasOnlySubstanceUnits="true" id="M_h2mb4p_c" metaid="e88af32f-52bf-4ea3-96d4-c9ed6f6b9627" name="1_hydroxy_2_methyl_2__E__butenyl_4_diphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H9O8P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O11P2" hasOnlySubstanceUnits="true" id="M_dudp_c" metaid="_7f99c338-b79b-4a9e-9a3d-55ab23354df3" name="dUDP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H11N2O11P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O15P3" hasOnlySubstanceUnits="true" id="M_utp_c" metaid="_78f0205b-6045-4d99-afb0-1036908abb19" name="UTP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H11N2O15P3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15668H28496N8O10693P8" hasOnlySubstanceUnits="true" id="M_OLPS_XF_c" metaid="e5ec0980-9d6c-4725-a6d8-01596295f970" name="M_OLPS_XF_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15668H28496N8O10693P8</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H7NO6PS" hasOnlySubstanceUnits="true" id="M_2c4mthzep_c" metaid="_5e130cfb-277f-428a-a098-650ca7817479" name="M_2c4mthzep_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H7NO6PS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O9P" hasOnlySubstanceUnits="true" id="M_xmp_c" metaid="_8099d8a8-dd25-47cf-915e-c00420a9d421" name="Xanthosine_5__phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H11N4O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O13P3" hasOnlySubstanceUnits="true" id="M_dctp_c" metaid="a08642fb-55ee-4236-8a19-b968415caa32" name="dCTP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H12N3O13P3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO3" hasOnlySubstanceUnits="true" id="M_tyr_L_c" metaid="_50dc732a-90b1-4d27-bc77-30a603eeef26" name="L_Tyrosine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H11NO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H48O5" hasOnlySubstanceUnits="true" id="M_fusa_e" metaid="a4f39bd6-6d7a-4f83-ab21-906515cb01fe" name="fusidic_acid" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C31H48O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O3" hasOnlySubstanceUnits="true" id="M_4mop_c" metaid="ec7b9db0-e55f-4b85-a54e-67ba036de2ea" name="4_Methyl_2_oxopentanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H9O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O14P3" hasOnlySubstanceUnits="true" id="M_gtp_c" metaid="f501b58d-8a76-4c4b-b5b0-0cb6af68405d" name="GTP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H12N5O14P3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="SO3" hasOnlySubstanceUnits="true" id="M_so3_c" metaid="_4530d80a-8366-4757-8e42-1a12017a710b" name="Sulfite" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: SO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N2O8P" hasOnlySubstanceUnits="true" id="M_dtmp_c" metaid="_8fa8df5e-f9a6-4a2a-9535-563565b3373c" name="dTMP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H13N2O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Ca" hasOnlySubstanceUnits="true" id="M_ca2_p" metaid="a8f8369a-3d8f-471a-980e-ce1a5aa73b7f" name="M_ca2_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Ca</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="SO3" hasOnlySubstanceUnits="true" id="M_so3_e" metaid="_770add00-6e39-4481-92b6-c6c36783a157" name="M_so3_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: SO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="SO3" hasOnlySubstanceUnits="true" id="M_so3_p" metaid="_226de117-767b-413e-b81c-90865ae649c2" name="M_so3_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: SO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Ca" hasOnlySubstanceUnits="true" id="M_ca2_e" metaid="a50766e1-e816-4b32-bd89-9ea5ed091798" name="M_ca2_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Ca</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H13O10P" hasOnlySubstanceUnits="true" id="M_s7p_c" metaid="fe317856-0f85-41e7-8c01-d8fce29b7d8a" name="Sedoheptulose_7_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H13O10P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N2O6P" hasOnlySubstanceUnits="true" id="M_eig3p_c" metaid="_570003c0-6fb9-48ed-908a-2f1b9254e4ad" name="D_erythro_1__Imidazol_4_yl_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H9N2O6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Ca" hasOnlySubstanceUnits="true" id="M_ca2_c" metaid="_57786765-d0e3-4a2a-ac05-231fa2bfec2d" name="M_ca2_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Ca</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO4" hasOnlySubstanceUnits="true" id="M_asp_L_p" metaid="eccbb63e-15b0-4489-8866-49653582bf25" name="L_Aspartate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H6NO4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnathr_c" metaid="caa87872-92e6-48eb-8128-373ec9bdbf40" name="tRNA_Thr_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O5" hasOnlySubstanceUnits="true" id="M_mal_L_c" metaid="_97fc5cd6-bf2d-42b1-b914-4cefd2653eaf" name="L_Malate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H4O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H69O3" hasOnlySubstanceUnits="true" id="M_3ophb_c" metaid="f749e6a4-51c6-4758-9ee2-e1082b623069" name="3_Octaprenyl_4_hydroxybenzoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C47H69O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H62N1O8P1" hasOnlySubstanceUnits="true" id="M_pe141_c" metaid="f3f86fa3-01b6-4446-b2b3-aeaddbba06eb" name="phosphatidylethanolamine__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C33H62N1O8P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H4O2S8Fe2R" hasOnlySubstanceUnits="true" id="M_sufbcd_2fe2s_c" metaid="a5250cc2-3161-4938-b306-d352fac7e26c" name="M_sufbcd_2fe2s_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: H4O2S8Fe2R</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="XH2" hasOnlySubstanceUnits="true" id="M_grxrd_c" metaid="_8b3a6c1e-90fb-4fbd-b760-309122e8d542" name="glutaredoxin__reduced_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: XH2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10NO4" hasOnlySubstanceUnits="true" id="M_acg5sa_c" metaid="_9a6a69d9-7816-41ad-8ab3-31de0f63cebd" name="N_Acetyl_L_glutamate_5_semialdehyde" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H10NO4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H52O5" hasOnlySubstanceUnits="true" id="M_12dgr120_c" metaid="_3307887d-664c-42df-99b3-c0d5d6546753" name="1_2_Diacyl_sn_glycerol__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C27H52O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17N2O3" hasOnlySubstanceUnits="true" id="M_dtbt_c" metaid="_0af8ca97-a291-4301-b6f0-9f7dadb736a3" name="Dethiobiotin" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H17N2O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H62N1O8P1" hasOnlySubstanceUnits="true" id="M_pe141_p" metaid="_4f68c804-0133-4b13-93a2-83e5d3e98b36" name="phosphatidylethanolamine__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C33H62N1O8P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C65H116O17P2" hasOnlySubstanceUnits="true" id="M_clpn141_p" metaid="b55e712c-9b04-4968-b46a-97f0ed08440c" name="cardiolipin__tetratetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C65H116O17P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13OS2" hasOnlySubstanceUnits="true" id="M_lipopb_c" metaid="_9197acaa-244b-4a66-8eed-d7562ebe699a" name="lipoate__protein_bound_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H13OS2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O6P" hasOnlySubstanceUnits="true" id="M_db4p_c" metaid="be6cc88e-8869-4f0a-95ea-1cec56d68bf0" name="3_4_dihydroxy_2_butanone_4_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H7O6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3" hasOnlySubstanceUnits="true" id="M_glu1sa_c" metaid="f8659985-6b20-4514-bdbd-5c4e7b903e27" name="L_Glutamate_1_semialdehyde" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H9NO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H114N14O40" hasOnlySubstanceUnits="true" id="M_murein4p4p_p" metaid="_6a913d64-d6ad-45f8-8a62-2825c672fe2e" name="two_linked_disacharide_tetrapeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C74H114N14O40</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="NH4" hasOnlySubstanceUnits="true" id="M_nh4_p" metaid="e3e1fbef-5cca-40a9-a98c-22d68418d224" name="Ammonium" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: NH4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_xyl_D_p" metaid="_41893ac6-e7a9-4d67-896f-7d614296c101" name="M_xyl_D_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H10O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_D_p" metaid="cc2947f7-02aa-4881-b504-703d4e90a8de" name="D_Alanine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_xyl_D_c" metaid="_55996ed3-aa03-4e98-9d22-d87f9c5ced2f" name="M_xyl_D_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H10O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H8O2S6R" hasOnlySubstanceUnits="true" id="M_sufbcd_c" metaid="c5d03c04-fb33-411e-a839-cb6400a75a7e" name="M_sufbcd_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: H8O2S6R</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_xyl_D_e" metaid="_190803c7-1935-49e4-b876-02d5c43612c7" name="M_xyl_D_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H10O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe2_c" metaid="_83518b44-6823-4dea-81ce-fabf6225aa85" name="Iron_2_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Fe</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe2_e" metaid="_490d747d-96d9-44b5-a74f-ea08c79312b2" name="Iron_2_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Fe</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H64N3O20P2" hasOnlySubstanceUnits="true" id="M_u23ga_XF_c" metaid="d830b30e-b667-4e90-b157-3346d21687d9" name="M_u23ga_XF_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C37H64N3O20P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O2" hasOnlySubstanceUnits="true" id="M_o2s_c" metaid="_03c73ba3-08aa-40cd-b94f-267fccb11f22" name="Superoxide_anion" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="NH4" hasOnlySubstanceUnits="true" id="M_nh4_e" metaid="_238ce08f-7369-4406-88eb-adef1a32991c" name="Ammonium" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: NH4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H26N7O17P3" hasOnlySubstanceUnits="true" id="M_nadph_c" metaid="_79cb1c70-0605-41de-a3db-25cfc1fba402" name="Nicotinamide_adenine_dinucleotide_phosphate___reduced" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C21H26N7O17P3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="NH4" hasOnlySubstanceUnits="true" id="M_nh4_c" metaid="f4b835be-56be-4913-9e89-389293095d56" name="Ammonium" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: NH4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe2_p" metaid="e656a6e5-41a0-4119-a49e-ef75e9115fbf" name="Iron_2_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Fe</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H22N3O17P3" hasOnlySubstanceUnits="true" id="M_2p4c2me_c" metaid="_84c625cc-fc64-4646-9307-d5026b6bba60" name="2_phospho_4__cytidine_5__diphospho__2_C_methyl_D_erythritol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C14H22N3O17P3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_D_c" metaid="be26013f-3974-45f5-86c0-9aede6e77f48" name="D_Alanine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_r5p_c" metaid="c107c6cb-e28d-4921-9a7e-0eb61b9914be" name="alpha_D_Ribose_5_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H9O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H52N6O19" hasOnlySubstanceUnits="true" id="M_anhgm3p_p" metaid="e188fdee-dc75-4563-beb0-502ac6769ee4" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tripeptide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C34H52N6O19</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H73O13P2" hasOnlySubstanceUnits="true" id="M_pgp160_c" metaid="_2e531889-f3ed-462b-9edc-1ef72593aeac" name="Phosphatidylglycerophosphate__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C38H73O13P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O10P" hasOnlySubstanceUnits="true" id="M_6pgc_c" metaid="b25c40ad-223d-4863-b211-23866e13e178" name="6_Phospho_D_gluconate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H10O10P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N2O14P3" hasOnlySubstanceUnits="true" id="M_dttp_c" metaid="_97d315e1-8977-45fa-abb6-cd2266001fbb" name="dTTP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H13N2O14P3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H55N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hoctaACP_c" metaid="cd8a2f3e-3417-498f-aedf-ccd745a14f68" name="R__3_Hydroxyoctadecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C29H55N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25N2O9PRS" hasOnlySubstanceUnits="true" id="M_actACP_c" metaid="_6d21b80a-2c5d-460d-b282-74d450bbc9d5" name="Acetoacetyl_ACP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15H25N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H52N6O19" hasOnlySubstanceUnits="true" id="M_anhgm3p_c" metaid="_4c36a102-91f7-4e9a-bfe5-7fb7765935e6" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tripeptide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C34H52N6O19</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H27N2O10PRS" hasOnlySubstanceUnits="true" id="M_egmeACP_c" metaid="ae0a7dd9-3026-414e-8379-a1c2e313a528" name="Enoylglutaryl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C17H27N2O10PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H31N2O10PRS" hasOnlySubstanceUnits="true" id="M_pimACP_c" metaid="_4a6b456d-2fb7-48bc-afc1-f4e457b15704" name="Pimeloyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C18H31N2O10PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H20N7O6" hasOnlySubstanceUnits="true" id="M_methf_c" metaid="c972eb08-db57-420d-9381-e52b69f26d30" name="5_10_Methenyltetrahydrofolate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C20H20N7O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="O2" hasOnlySubstanceUnits="true" id="M_o2_p" metaid="_08237c0b-8d28-4610-8edb-c238b34de557" name="Dioxygen" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H73O13P2" hasOnlySubstanceUnits="true" id="M_pgp160_p" metaid="_810197d9-640e-48b3-bf2f-8d401750eff4" name="Phosphatidylglycerophosphate__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C38H73O13P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8NO6P" hasOnlySubstanceUnits="true" id="M_phom_c" metaid="_15898cdc-8b5e-4ebd-9877-8cc61ccd4930" name="O_Phospho_L_homoserine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H8NO6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H83N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdodec11eg_c" metaid="_46d36596-2ce2-41b5-b835-54c7218187b4" name="CDP_1_2_dioctadec_11_enoylglycerol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C48H83N3O15P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H7O4" hasOnlySubstanceUnits="true" id="M_alac_S_c" metaid="_687953f9-6829-4dd8-823c-84bc6e6c29b3" name="S__2_Acetolactate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H7O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H75O8P" hasOnlySubstanceUnits="true" id="M_pa180_p" metaid="_32343c1c-0a3c-4091-86df-62277eff228c" name="1_2_dioctadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C39H75O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H52O5" hasOnlySubstanceUnits="true" id="M_12dgr120_p" metaid="ae07c5f0-d23b-484e-97b4-195dda7d543d" name="M_12dgr120_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C27H52O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O2" hasOnlySubstanceUnits="true" id="M_trp_L_c" metaid="_86423dcb-31bd-4177-b7eb-f7b9c3c27372" name="L_Tryptophan" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C11H12N2O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H39N5O23P2" hasOnlySubstanceUnits="true" id="M_uamag_c" metaid="_8c17a128-5d55-4f9a-9be4-f4911ab7e4fb" name="UDP_N_acetylmuramoyl_L_alanyl_D_glutamate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C28H39N5O23P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C71H107N13O38" hasOnlySubstanceUnits="true" id="M_murein3px4p_p" metaid="a00f4e63-0a18-4c52-810f-238542cdfbc1" name="two_disacharide_linked_murein_units__tripeptide_crosslinked_tetrapeptide__A2pm__D_ala___middle_of_chain_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C71H107N13O38</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21N2O7PRS" hasOnlySubstanceUnits="true" id="M_ACP_c" metaid="_472116a4-d2cf-45ba-915d-86b5cc105f06" name="acyl_carrier_protein" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C11H21N2O7PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O7PS" hasOnlySubstanceUnits="true" id="M_5mdru1p_c" metaid="_71100846-7171-4b77-8870-62eca0fd573d" name="M_5mdru1p_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H11O7PS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O2" hasOnlySubstanceUnits="true" id="M_mthgxl_c" metaid="b887965c-9452-42d7-a22e-baa0a5a843ff" name="Methylglyoxal" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H4O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H75O8P" hasOnlySubstanceUnits="true" id="M_pa180_c" metaid="_3732d255-4381-4bb1-8ebd-a90d1432fbe8" name="1_2_dioctadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C39H75O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H41N2O9PRS" hasOnlySubstanceUnits="true" id="M_3oddecACP_c" metaid="_6ffd781b-5e15-4bb0-adc8-b0b05ec36855" name="3_Oxododecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C23H41N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H65O13P2" hasOnlySubstanceUnits="true" id="M_pgp140_c" metaid="_5fb87366-9fc9-4a49-b0f1-5c18e13a6018" name="Phosphatidylglycerophosphate__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C34H65O13P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3" hasOnlySubstanceUnits="true" id="M_ser_L_c" metaid="b666fa77-cef2-4c37-8d40-a553b728e8ad" name="L_Serine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7NO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H18N2O4" hasOnlySubstanceUnits="true" id="M_rdmbzi_c" metaid="_9bf3dd91-d3c2-4be1-83b9-d15eb375d1d3" name="N1__alpha_D_ribosyl__5_6_dimethylbenzimidazole" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C14H18N2O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H36N4O16" hasOnlySubstanceUnits="true" id="M_uppg3_c" metaid="aefadabf-4806-463b-8dcf-424db614e01e" name="Uroporphyrinogen_III" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C40H36N4O16</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2Se" hasOnlySubstanceUnits="true" id="M_selhcys_c" metaid="add92886-d68c-400d-a608-87b7d2655da8" name="Selenohomocysteine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H9NO2Se</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3" hasOnlySubstanceUnits="true" id="M_hom_L_c" metaid="bf36d9c9-5f97-41cb-bd84-506bf8977cd0" name="L_Homoserine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H9NO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7N" hasOnlySubstanceUnits="true" id="M_indole_c" metaid="c9ff885b-532d-49e6-ac9d-4ab3afdef128" name="M_indole_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H7N</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H36N7O18P3S" hasOnlySubstanceUnits="true" id="M_aacoa_c" metaid="d7c74ffc-762e-4458-8aa4-990be3b32b43" name="Acetoacetyl_CoA" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C25H36N7O18P3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H31N2O11PRS" hasOnlySubstanceUnits="true" id="M_opmeACP_c" metaid="_0a001492-7fe0-47cd-babd-0c3415d27b2b" name="3_Oxo_pimeloyl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C19H31N2O11PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2" hasOnlySubstanceUnits="true" id="M_gly_p" metaid="b35981b6-aee2-4541-988d-3eeb4e9a7c26" name="Glycine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C2H5NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5O3" hasOnlySubstanceUnits="true" id="M_acac_c" metaid="f897ec0e-395a-4bf1-bba0-bcb8e72c3648" name="Acetoacetate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H5O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O7P" hasOnlySubstanceUnits="true" id="M_dcmp_c" metaid="_6c621c31-b987-4e9f-9880-794aeff18760" name="dCMP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H12N3O7P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O14P3" hasOnlySubstanceUnits="true" id="M_itp_c" metaid="_774db795-83b1-4585-8485-3bfa0156e766" name="ITP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H11N4O14P3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2" hasOnlySubstanceUnits="true" id="M_gly_e" metaid="_11049dd9-1838-42ae-90b6-d7081ea742e8" name="Glycine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C2H5NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69N1O10P1" hasOnlySubstanceUnits="true" id="M_ps161_c" metaid="ac18d7e5-0b39-4fb7-b1fc-bb08d4f1ae96" name="phosphatidylserine__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C38H69N1O10P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2R" hasOnlySubstanceUnits="true" id="M_thrtrna_c" metaid="_860a736f-5b1f-44be-8559-f3a648922a5f" name="L_Threonyl_tRNA_Thr_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H9NO2R</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O2S10Fe4R" hasOnlySubstanceUnits="true" id="M_sufbcd_2fe2s2_c" metaid="a22e912a-1f29-4df2-9e79-f57714fe2a00" name="M_sufbcd_2fe2s2_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: O2S10Fe4R</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H61N9O28P2" hasOnlySubstanceUnits="true" id="M_ugmda_c" metaid="c3bd4715-8445-4d3c-bbde-ea68d321c37b" name="UDP_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_alanine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C41H61N9O28P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2" hasOnlySubstanceUnits="true" id="M_gly_c" metaid="_1eb1bf75-0a4f-4556-b9a1-367bbb5da0f9" name="Glycine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C2H5NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H65O13P2" hasOnlySubstanceUnits="true" id="M_pgp140_p" metaid="_36585e3d-b923-4499-9905-981b8a14a1b8" name="Phosphatidylglycerophosphate__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C34H65O13P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="XH2" hasOnlySubstanceUnits="true" id="M_dsbcrd_p" metaid="_17c951f0-f66b-4570-bc25-0fc79729db39" name="protein_disulfide_isomerase_II__reduced_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: XH2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_B_c" metaid="_5eef8089-a73c-420e-a253-fd35255ab7c4" name="beta_Alanine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_xylu_D_c" metaid="cac99b80-c7f6-4b10-8f29-6c9bcbe43731" name="D_Xylulose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H10O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O2R" hasOnlySubstanceUnits="true" id="M_glntrna_c" metaid="_1afac2e2-a970-45d3-9b2a-a99818ff5717" name="L_Glutaminyl_tRNA_Gln_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H10N2O2R</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="O2" hasOnlySubstanceUnits="true" id="M_o2_e" metaid="_7a3c546d-aae9-400f-8a68-2584af93deab" name="Dioxygen" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O2" hasOnlySubstanceUnits="true" id="M_o2_c" metaid="_920db3b3-4cfd-4d03-a1bb-99fb95379c36" name="Dioxygen" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H21N7O6" hasOnlySubstanceUnits="true" id="M_mlthf_c" metaid="d7a2c78b-dbaf-49fb-97e6-b7bdf8707ee6" name="5_10_Methylenetetrahydrofolate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C20H21N7O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O2" hasOnlySubstanceUnits="true" id="M_gcald_c" metaid="_4045042c-4961-478c-9a3c-9af1e66a3996" name="Glycolaldehyde" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C2H4O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3" hasOnlySubstanceUnits="true" id="M_ser_L_p" metaid="_1194e4f2-dd8f-4074-9966-92524ee9094c" name="L_Serine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7NO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H21N3O16P2" hasOnlySubstanceUnits="true" id="M_udpLa4fn_c" metaid="_36f966e5-da63-4c99-8a43-558ae54009cb" name="M_udpLa4fn_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15H21N3O16P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H51N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ocvac11eACP_c" metaid="db6136a2-7b96-4201-be7d-8455a2ca2886" name="3_oxo_cis_vacc_11_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C29H51N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3" hasOnlySubstanceUnits="true" id="M_ser_L_e" metaid="d0f98745-1684-4a23-bb58-b12c850f41a2" name="L_Serine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7NO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H14N3O" hasOnlySubstanceUnits="true" id="M_Ncbmpts_c" metaid="c2189df2-d53f-42e3-a49f-4df323c52e6d" name="M_Ncbmpts_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H14N3O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H19O2" hasOnlySubstanceUnits="true" id="M_dca_c" metaid="_66ed4545-1d94-4af3-b8db-d431ff6d993a" name="Decanoate__n_C10_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H19O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O2" hasOnlySubstanceUnits="true" id="M_acetol_c" metaid="e01fadbd-2425-46dc-bf6a-0d89e3023690" name="Acetol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H6O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4" hasOnlySubstanceUnits="true" id="M_26dap_LL_c" metaid="_384c9764-e06f-4341-8700-cc42fb02c829" name="LL_2_6_Diaminoheptanedioate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H14N2O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H19O2" hasOnlySubstanceUnits="true" id="M_dca_p" metaid="e4ee61d6-be90-4fe4-a39a-b3fdf5f10d40" name="Decanoate__n_C10_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H19O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7N2" hasOnlySubstanceUnits="true" id="M_aprop_c" metaid="b4654be9-f0de-481b-99db-20c6c45e318b" name="alpha_Aminopropiononitrile" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7N2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H70N1O8P1" hasOnlySubstanceUnits="true" id="M_pe161_c" metaid="b4642c87-1848-4d86-a0e9-43f209ea22f7" name="phosphatidylethanolamine__dihexadec_9enoyl__n_C16_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C37H70N1O8P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H70N1O8P1" hasOnlySubstanceUnits="true" id="M_pe161_p" metaid="_06e1ce0a-e5fd-4faa-bb0a-10460b9bbb83" name="phosphatidylethanolamine__dihexadec_9enoyl__n_C16_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C37H70N1O8P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O12P3" hasOnlySubstanceUnits="true" id="M_datp_c" metaid="c8230291-6069-4824-b5c3-bd4a92f40ceb" name="dATP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H12N5O12P3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O8P" hasOnlySubstanceUnits="true" id="M_nmn_p" metaid="_90a0300f-a58a-43a6-bdaa-a8f418893a53" name="M_nmn_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C11H14N2O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H27N3O7" hasOnlySubstanceUnits="true" id="M_mincyc_p" metaid="_9eec1621-5626-4005-9798-12f0bd29d07d" name="minocycline" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C23H27N3O7</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H27N3O7" hasOnlySubstanceUnits="true" id="M_mincyc_e" metaid="_97f9c245-fc34-4fdc-82cc-125c0a03dba5" name="minocycline" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C23H27N3O7</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H31N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hhexACP_c" metaid="_99f7a9f7-c421-452d-a75f-4e1fc7a93682" name="R__3_Hydroxyhexanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C17H31N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O8P" hasOnlySubstanceUnits="true" id="M_nmn_c" metaid="c527a149-b573-43fd-a723-0b38da30fd60" name="NMN" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C11H14N2O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O8P" hasOnlySubstanceUnits="true" id="M_nmn_e" metaid="b74a8305-5c42-4e87-93fe-43e5523f2d8c" name="M_nmn_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C11H14N2O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O6" hasOnlySubstanceUnits="true" id="M_dkglc_c" metaid="_0aff4c17-50d4-459d-8d62-799a5a7a6700" name="2_deoxy_5_keto_D_gluconate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H9O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13N3O3" hasOnlySubstanceUnits="true" id="M_citr_L_c" metaid="b702e36d-a82d-44d2-b37e-3c02741b65b2" name="L_Citrulline" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H13N3O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H66O10P1" hasOnlySubstanceUnits="true" id="M_pg140_c" metaid="c76e89dc-a277-4202-95f8-3ae6b5867643" name="Phosphatidylglycerol__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C34H66O10P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H14N5O8P" hasOnlySubstanceUnits="true" id="M_25drapp_c" metaid="e80af714-1c96-4b5b-bdb7-2687affcb2e8" name="2_5_Diamino_6__ribosylamino__4__3H__pyrimidinone_5_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H14N5O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5O3" hasOnlySubstanceUnits="true" id="M_4hbz_c" metaid="_01257ba0-9cfe-4e3c-92a6-a1755daa91fc" name="4_Hydroxybenzoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H5O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N5O20P5" hasOnlySubstanceUnits="true" id="M_gdptp_c" metaid="_74530af1-b0ef-4b97-8d8d-d032e3302ef1" name="Guanosine_3__diphosphate_5__triphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H11N5O20P5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7N" hasOnlySubstanceUnits="true" id="M_indole_p" metaid="c4486849-9f1e-493a-a783-f4e0f11b44a3" name="M_indole_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H7N</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N4OR" hasOnlySubstanceUnits="true" id="M_argtrna_c" metaid="a29f6a64-1972-4bdd-ab20-a07401403bd7" name="L_Arginyl_tRNA_Arg_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H15N4OR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="S2Fe2" hasOnlySubstanceUnits="true" id="M_2fe2s_c" metaid="_042234e1-a6d4-4292-b6e0-44286a168d5f" name="2Fe_2S__iron_sulfur_cluster" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: S2Fe2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H36FeN4O16" hasOnlySubstanceUnits="true" id="M_sheme_c" metaid="_44458f90-77ca-472f-9d9c-544e52c2a5c1" name="M_sheme_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C42H36FeN4O16</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H7O3S" hasOnlySubstanceUnits="true" id="M_2kmb_c" metaid="dc176f49-8ff2-46a7-8d86-9197a8296b77" name="M_2kmb_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H7O3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H6N2O" hasOnlySubstanceUnits="true" id="M_ncam_c" metaid="_069e618e-c1cd-4e94-8c46-163f9c8650ee" name="Nicotinamide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H6N2O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H66O10P1" hasOnlySubstanceUnits="true" id="M_pg140_p" metaid="_21d0ab57-2ce0-4bb3-ac3b-3ccd08dd0f74" name="Phosphatidylglycerol__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C34H66O10P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C95H152N8O28P2" hasOnlySubstanceUnits="true" id="M_uaagmda_c" metaid="_839ad1c3-0c7f-4c19-acca-2baf0c1dfe00" name="Undecaprenyl_diphospho_N_acetylmuramoyl__N_acetylglucosamine__L_ala_D_glu_meso_2_6_diaminopimeloyl_D_ala_D_ala" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C95H152N8O28P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7N" hasOnlySubstanceUnits="true" id="M_indole_e" metaid="c7b03900-6569-43ef-b1d4-d52ac716312c" name="M_indole_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H7N</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO4" hasOnlySubstanceUnits="true" id="M_glu_L_c" metaid="c88ceaf9-ec64-4a8f-ad11-4f5278c32933" name="L_Glutamate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H8NO4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N2O18P2" hasOnlySubstanceUnits="true" id="M_udpglcur_c" metaid="ee49d88c-916d-4d33-a508-9c2c2e573e93" name="UDP_D_glucuronate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15H19N2O18P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4" hasOnlySubstanceUnits="true" id="M_dgsn_c" metaid="_8a68773e-a15e-434a-9255-30db16dd9f60" name="Deoxyguanosine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H13N5O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O8P" hasOnlySubstanceUnits="true" id="M_gmp_c" metaid="_1fec28c5-4bfe-4f14-88cf-9c69eb01035b" name="GMP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H12N5O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H20N3O8S" hasOnlySubstanceUnits="true" id="M_lgt_S_c" metaid="_0f9a8114-4c5e-4b9c-96bb-3f1fd1496125" name="R__S_Lactoylglutathione" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C13H20N3O8S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H24N6O15P2" hasOnlySubstanceUnits="true" id="M_dnad_c" metaid="_54379ba1-6b67-419c-b014-16b8f6e4f0ec" name="Deamino_NAD_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C21H24N6O15P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H16NO5" hasOnlySubstanceUnits="true" id="M_pnto_R_c" metaid="a8479452-3800-4d7d-9011-e72a1d15395e" name="R__Pantothenate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H16NO5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CH3NO" hasOnlySubstanceUnits="true" id="M_frmd_c" metaid="_8fdc8aae-84a9-44e2-bfa6-b23c27efad70" name="Formamide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: CH3NO</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H81O13P2" hasOnlySubstanceUnits="true" id="M_pgp180_c" metaid="_3c1a78a0-2626-4e14-a3f8-920fe080e89b" name="Phosphatidylglycerophosphate__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C42H81O13P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O3" hasOnlySubstanceUnits="true" id="M_glyclt_p" metaid="_008a959d-4c73-4490-9e90-bfaaa2800594" name="Glycolate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C2H3O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="NO3" hasOnlySubstanceUnits="true" id="M_no3_p" metaid="a9461d95-59e4-4416-be08-825cfd9ab462" name="Nitrate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: NO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42N7O17P3S" hasOnlySubstanceUnits="true" id="M_hxcoa_c" metaid="_62173060-2365-4b0a-844b-ebe9570612c9" name="Hexanoyl_CoA__n_C6_0CoA_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C27H42N7O17P3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H30N5O9" hasOnlySubstanceUnits="true" id="M_LalaDgluMdapDala_c" metaid="bf130d8a-ea65-4f7a-8fba-05c81f75a16c" name="L_alanine_D_glutamate_meso_2_6_diaminoheptanedioate_D_alanine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C18H30N5O9</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O6" hasOnlySubstanceUnits="true" id="M_tartr_D_c" metaid="_3c55486e-a3b2-41b5-9259-17fa9bced04f" name="M_tartr_D_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H4O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_glc_D_p" metaid="fc4e897f-6c9e-4db6-9e88-e152a0314e66" name="D_Glucose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H12O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc3p_p" metaid="_3d54e1ba-ed15-451c-9697-d90757980854" name="Glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7O6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO4" hasOnlySubstanceUnits="true" id="M_glu_L_p" metaid="_2502dd0a-d150-47fd-8c37-bcf8aca3ee2e" name="L_Glutamate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H8NO4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C114H172N22O59" hasOnlySubstanceUnits="true" id="M_murein5px4px4p_p" metaid="_982b8cc4-953e-4d0a-9e96-4b7c42b10abd" name="three_disacharide_linked_murein_units__pentapeptide_crosslinked_tetrapeptide__A2pm__D_ala__tetrapeptide_corsslinked_tetrapeptide__A2pm__D_ala____middle_of_chain_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C114H172N22O59</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="XH2" hasOnlySubstanceUnits="true" id="M_dsbdrd_c" metaid="a64e1365-cc16-429a-b6d5-c065eab028b0" name="fused_thiol_disulfide_interchange_protein__reduced_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: XH2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO4" hasOnlySubstanceUnits="true" id="M_chitos_c" metaid="_2bcac2b8-afeb-48f4-ae21-030887e3a747" name="Chitosan" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H11NO4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="SFe2" hasOnlySubstanceUnits="true" id="M_2fe1s_c" metaid="_17a6cca5-606c-4941-b5d6-7835d25c528a" name="2Fe_1S__desulfurated_iron_sulfur_cluster" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: SFe2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O7P" hasOnlySubstanceUnits="true" id="M_e4p_c" metaid="_39835147-d3d9-49a8-885f-283d08d181fd" name="D_Erythrose_4_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H7O7P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc3p_e" metaid="e5abd030-9340-4a4e-bbbd-5b21d8656a66" name="Glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7O6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="NO3" hasOnlySubstanceUnits="true" id="M_no3_c" metaid="f978f7a7-8bf7-4482-b9c2-beca681339e9" name="Nitrate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: NO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H55O4" hasOnlySubstanceUnits="true" id="M_2hp6mobq_me_c" metaid="_33497ea1-1610-4c76-9877-727932b040a4" name="2_Hexaprenyl_3_methyl_5_hydroxy_6_methoxy_1_4_benzoquinone" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C38H55O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O3" hasOnlySubstanceUnits="true" id="M_glyclt_e" metaid="_554d2a97-1bee-4264-9fa6-09be7456bcbb" name="Glycolate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C2H3O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O3" hasOnlySubstanceUnits="true" id="M_glyclt_c" metaid="_65b2183a-ddcf-4381-9de2-a107d713f3a8" name="Glycolate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C2H3O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H30N5O9" hasOnlySubstanceUnits="true" id="M_LalaDgluMdapDala_p" metaid="_1d4db780-a420-49a8-83b6-7216e38f38dd" name="L_alanine_D_glutamate_meso_2_6_diaminoheptanedioate_D_alanine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C18H30N5O9</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="NO3" hasOnlySubstanceUnits="true" id="M_no3_e" metaid="e581c969-9254-4298-8248-0014f6c0c620" name="Nitrate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: NO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc3p_c" metaid="_6feed938-b90a-4460-8d02-c8d50ef986ac" name="Glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7O6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H81O13P2" hasOnlySubstanceUnits="true" id="M_pgp180_p" metaid="_2858a7ce-a73d-4680-9ac4-c5dac0db95a5" name="Phosphatidylglycerophosphate__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C42H81O13P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO4" hasOnlySubstanceUnits="true" id="M_glu_L_e" metaid="b2a967d6-406d-4bcc-ab0f-b663177bbcdc" name="L_Glutamate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H8NO4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H31N2O10PRS" hasOnlySubstanceUnits="true" id="M_epmeACP_c" metaid="_21d1ec1b-e598-4833-9f17-a385008ae05b" name="Enoylpimeloyl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C19H31N2O10PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="H2" hasOnlySubstanceUnits="true" id="M_h2_p" metaid="f9691f5b-e9a3-46e9-ba1f-01fc7b113133" name="M_h2_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: H2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_glc_D_c" metaid="_6565bacc-687b-449e-a5f4-9ca05d63f802" name="D_Glucose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H12O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_glc_D_e" metaid="_72aab22e-24dc-4b6f-8b30-b0522ba63937" name="D_Glucose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H12O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NOR" hasOnlySubstanceUnits="true" id="M_phetrna_c" metaid="c3fe7524-0ceb-4b49-936a-7221e11250e1" name="L_Phenylalanyl_tRNA_Phe_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H11NOR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H53N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ooctdACP_c" metaid="_13fdd979-fb86-4511-bba9-1aac7d2c3f2e" name="3_Oxooctadecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C29H53N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O7" hasOnlySubstanceUnits="true" id="M_glcn_c" metaid="cb536510-dcdf-4b75-a366-17ae03734737" name="D_Gluconate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H11O7</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O2" hasOnlySubstanceUnits="true" id="M_ppa_c" metaid="_9674bdfc-fb67-4d2a-8e5a-6b29aa955e0e" name="Propionate__n_C3_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H5O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H18NO8" hasOnlySubstanceUnits="true" id="M_acmum_p" metaid="_8d4998e5-1b2b-460a-b8bd-129c29763583" name="M_acmum_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C11H18NO8</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H74O10P1" hasOnlySubstanceUnits="true" id="M_pg160_c" metaid="_121f3ff0-ac59-41a0-a978-2201a7442d0c" name="Phosphatidylglycerol__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C38H74O10P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6NO6P" hasOnlySubstanceUnits="true" id="M_pser_L_c" metaid="e14edc1e-83a9-4b8f-8b17-a9be3ffae083" name="O_Phospho_L_serine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H6NO6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3" hasOnlySubstanceUnits="true" id="M_athr_L_c" metaid="_1c12eff7-8faa-474b-a5cd-871c7482cb12" name="L_Allo_threonine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H9NO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3S" hasOnlySubstanceUnits="true" id="M_cgly_p" metaid="_3f734818-c32c-4729-a252-3045cff50a39" name="Cys_Gly" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H10N2O3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N6O5S" hasOnlySubstanceUnits="true" id="M_ahcys_c" metaid="_303ab19e-02a1-48ac-8d2c-e25e1dbe9c1e" name="S_Adenosyl_L_homocysteine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C14H20N6O5S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="H2" hasOnlySubstanceUnits="true" id="M_h2_e" metaid="bcf85acc-a44f-467a-9cc5-c5e5f281e208" name="M_h2_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: H2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45N2O8PRS" hasOnlySubstanceUnits="true" id="M_tdeACP_c" metaid="_83fee56a-50df-467a-8ab0-75d7032b0bcb" name="cis_tetradec_7_enoyl__acyl_carrier_protein___n_C14_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C25H45N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H2" hasOnlySubstanceUnits="true" id="M_h2_c" metaid="_2155aa07-cf0e-4b2f-a153-5d4c88585a86" name="H2" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: H2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10N2O11P" hasOnlySubstanceUnits="true" id="M_orot5p_c" metaid="_39237433-67e9-4f38-a4bd-d779b10786ce" name="Orotidine_5__phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H10N2O11P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_man1p_c" metaid="_3c7cb235-19e6-4f35-8408-9af3a85ca92b" name="D_Mannose_1_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H11O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="XH" hasOnlySubstanceUnits="true" id="M_flxr_c" metaid="_7a8b6c4f-b4c2-4987-9e52-5356b96bfc4b" name="M_flxr_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: XH</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O3" hasOnlySubstanceUnits="true" id="M_3mop_c" metaid="a523d445-008c-4f73-91d3-478484d82d72" name="S__3_Methyl_2_oxopentanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H9O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H56FeN4O5" hasOnlySubstanceUnits="true" id="M_hemeO_c" metaid="_0862868f-02c0-4967-861e-a89874c6b49a" name="Heme_O" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C49H56FeN4O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O7" hasOnlySubstanceUnits="true" id="M_glcn_p" metaid="_30675c26-1429-4eb7-a42f-3b346589fbef" name="D_Gluconate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H11O7</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H74O10P1" hasOnlySubstanceUnits="true" id="M_pg160_p" metaid="_41f5eda1-869c-44af-a7a1-e2ee7a28e24f" name="Phosphatidylglycerol__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C38H74O10P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3S" hasOnlySubstanceUnits="true" id="M_cgly_c" metaid="_8f4859cd-9f82-4c9a-88b1-2dd331db4644" name="Cys_Gly" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H10N2O3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O4" hasOnlySubstanceUnits="true" id="M_fum_c" metaid="_31430382-6fc5-4576-ae42-16748a9951bf" name="Fumarate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H2O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_f6p_c" metaid="e58dcf26-8f99-4c9c-a634-506b81f9fb2a" name="D_Fructose_6_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H11O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47N2O8PRS" hasOnlySubstanceUnits="true" id="M_t3c9palmeACP_c" metaid="_9aeb9984-cc71-424e-8288-087fa414f07d" name="trans_3_cis_9_palmitoleoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C27H47N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O4" hasOnlySubstanceUnits="true" id="M_fum_e" metaid="fc9ab27f-4e10-4baa-b4d7-a2d9134f3e3f" name="Fumarate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H2O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_ru5p_L_c" metaid="_5aa83291-7ce9-4bc9-909f-2193bc0ed427" name="M_ru5p_L_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H9O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12Cl2N2O5" hasOnlySubstanceUnits="true" id="M_cm_p" metaid="_397a31ba-d391-49b7-b384-000d062a6aaa" name="Chloramphenicol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C11H12Cl2N2O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H58N4O12" hasOnlySubstanceUnits="true" id="M_rfamp_e" metaid="_352e74f1-4166-49d0-bb20-fb3eb7aeb53f" name="rifampin" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C43H58N4O12</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C1O2X" hasOnlySubstanceUnits="true" id="M_moadcoo_c" metaid="a8316226-bed9-4f26-93a8-6be58383b8b6" name="MoaD_Protein_with_carboxylate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C1O2X</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51N2O8PRS" hasOnlySubstanceUnits="true" id="M_palmACP_c" metaid="_3762fc7b-6549-4a88-9003-48b60822fd9b" name="Palmitoyl_ACP__n_C16_0ACP_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C27H51N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12Cl2N2O5" hasOnlySubstanceUnits="true" id="M_cm_e" metaid="_9a640f21-052a-4b92-9827-f460860e5f2a" name="Chloramphenicol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C11H12Cl2N2O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H58N4O12" hasOnlySubstanceUnits="true" id="M_rfamp_p" metaid="_9e523d1e-bcfb-4063-b0b4-9b52feb69de7" name="rifampin" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C43H58N4O12</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O4" hasOnlySubstanceUnits="true" id="M_fum_p" metaid="_074c5051-13ae-413f-946f-848579c350a9" name="Fumarate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H2O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7NO3" hasOnlySubstanceUnits="true" id="M_2aobut_c" metaid="_846910d3-7931-4ddb-9936-20ee14b3ad7e" name="L_2_Amino_3_oxobutanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H7NO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H64O5" hasOnlySubstanceUnits="true" id="M_12dgr161_c" metaid="_73cd75d1-afde-4e2b-9ae1-eee238056f1f" name="1_2_Diacyl_sn_glycerol__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C35H64O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H51N2O8PRS" hasOnlySubstanceUnits="true" id="M_t3c11vaceACP_c" metaid="_2e9bdb87-6192-421d-bd4b-73afeb5524eb" name="trans_3_cis_11_vacceoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C29H51N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12NO9P" hasOnlySubstanceUnits="true" id="M_nicrnt_c" metaid="cf878e02-dec2-4a25-aafa-e0c88bc7cc46" name="Nicotinate_D_ribonucleotide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C11H12NO9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O7" hasOnlySubstanceUnits="true" id="M_icit_p" metaid="_2ea942c4-3bb3-4f7b-a6d2-b3dd291513f3" name="M_icit_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H5O7</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H24N2O8" hasOnlySubstanceUnits="true" id="M_ttrcyc_p" metaid="c872ba42-6e97-4150-8915-a81262ca281c" name="tetracycline" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C22H24N2O8</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O10P2" hasOnlySubstanceUnits="true" id="M_13dpg_c" metaid="_270a294f-95f4-44eb-b2b5-d1521a2fff09" name="3_Phospho_D_glyceroyl_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H4O10P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H24N2O8" hasOnlySubstanceUnits="true" id="M_ttrcyc_e" metaid="f670aae4-f0dd-4f6b-8ed1-a4fa8390d25a" name="tetracycline" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C22H24N2O8</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H53N2O8PRS" hasOnlySubstanceUnits="true" id="M_toctd2eACP_c" metaid="_8280755e-4003-4945-8e15-4f0cb979c977" name="trans_octadec_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C29H53N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O4" hasOnlySubstanceUnits="true" id="M_2ahbut_c" metaid="d2a9e733-d780-46e4-830b-4945c038cd20" name="S__2_Aceto_2_hydroxybutanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H9O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H122O61" hasOnlySubstanceUnits="true" id="M_dextrin_e" metaid="aba1bc8e-b8b7-490e-956a-4dee1f2680ab" name="M_dextrin_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C72H122O61</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O6" hasOnlySubstanceUnits="true" id="M_g15l_p" metaid="_0a17ce51-04cc-417a-ab06-c85a5e0c8db2" name="D_Glucono_1_5_lactone" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H10O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O7" hasOnlySubstanceUnits="true" id="M_icit_c" metaid="_390ea3f2-ac4d-4790-9ee7-cdb1988ba3c1" name="Isocitrate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H5O7</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaarg_c" metaid="_46cb99e1-98d9-44f4-8f95-544977a6f5e7" name="tRNA_Arg_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O6PS" hasOnlySubstanceUnits="true" id="M_dkmpp_c" metaid="d3778e9a-8347-4952-b345-6ecea063cafe" name="M_dkmpp_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H9O6PS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H16NO7" hasOnlySubstanceUnits="true" id="M_anhm_c" metaid="d8f281e8-5887-440f-9c17-f97971d3c49e" name="1_6_anhydrous_N_Acetylmuramate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C11H16NO7</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O3" hasOnlySubstanceUnits="true" id="M_dad_5_c" metaid="_162bf943-8215-436c-9a89-d5c63f6d3dfb" name="5__Deoxyadenosine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H13N5O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Mn" hasOnlySubstanceUnits="true" id="M_mn2_e" metaid="_0ea01ae0-7a5d-47a4-8207-c196a812ded6" name="Mn2_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Mn</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Mn" hasOnlySubstanceUnits="true" id="M_mn2_c" metaid="_83d9933b-0372-4a51-bfc7-169bdd775534" name="Manganese_II_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Mn</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O6" hasOnlySubstanceUnits="true" id="M_dglca_c" metaid="_03dac608-6eae-4ee4-91b3-0618ed2fc166" name="5_deoxy_D_glucuronate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H9O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O3" hasOnlySubstanceUnits="true" id="M_lac_D_c" metaid="_92fe2025-bab0-45f4-89f0-5a654c84b81c" name="D_Lactate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H5O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O3" hasOnlySubstanceUnits="true" id="M_dhbpt_c" metaid="_2ef223f7-d5f3-4373-8f36-0fbb847f6ab2" name="6_7_Dihydrobiopterin" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H13N5O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15N3O8P" hasOnlySubstanceUnits="true" id="M_fpram_c" metaid="_11f9ced6-220d-4c17-bd17-96e8243fe635" name="2__Formamido__N1__5_phospho_D_ribosyl_acetamidine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H15N3O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H104N2O23P2" hasOnlySubstanceUnits="true" id="M_lipidA_XF_c" metaid="edce8bf3-d3c8-44d2-a24c-327cfbec2374" name="M_lipidA_XF_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C56H104N2O23P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H2O6P" hasOnlySubstanceUnits="true" id="M_pep_c" metaid="_2765b289-a330-4856-81c4-71992fa0bb32" name="Phosphoenolpyruvate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H2O6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NOSR" hasOnlySubstanceUnits="true" id="M_mettrna_c" metaid="_94574803-7c62-41d4-8341-a609b551a430" name="L_Methionyl_tRNA__Met_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H11NOSR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Mn" hasOnlySubstanceUnits="true" id="M_mn2_p" metaid="_63cac064-c94d-4dde-b64a-11d3f308d2f5" name="Mn2_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Mn</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H36N7O17P3S" hasOnlySubstanceUnits="true" id="M_ppcoa_c" metaid="a27fc8f7-130b-4386-849e-70cb867096c9" name="Propanoyl_CoA" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C24H36N7O17P3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H39N2O8PRS" hasOnlySubstanceUnits="true" id="M_t3c5ddeceACP_c" metaid="_4bc7d4c1-4433-455a-8181-396b0a525b28" name="trans_3_cis_5_dodecenoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C23H39N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H58N1O8P1" hasOnlySubstanceUnits="true" id="M_pe120_c" metaid="_2c84ea61-f646-49c6-ac1e-dbc1f2fdf85d" name="phosphatidylethanolamine__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C29H58N1O8P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N3O" hasOnlySubstanceUnits="true" id="M_histd_c" metaid="d5fb9dd9-a2f3-407e-9b0d-a719c112bc83" name="L_Histidinol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H12N3O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H56O5" hasOnlySubstanceUnits="true" id="M_12dgr141_c" metaid="_16a0df8e-1911-417d-b125-2918f2299f9a" name="1_2_Diacyl_sn_glycerol__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C31H56O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H58N1O8P1" hasOnlySubstanceUnits="true" id="M_pe120_p" metaid="_2efe61fc-09ae-4a2b-b42e-7f9d89a4bb36" name="phosphatidylethanolamine__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C29H58N1O8P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H3NO4" hasOnlySubstanceUnits="true" id="M_quln_c" metaid="_7e704a7e-2d52-4f55-a31c-bb6bf13405bc" name="Quinolinate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H3NO4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H2O6P" hasOnlySubstanceUnits="true" id="M_2pglyc_c" metaid="a9c779bc-73bb-429c-82ac-f1d5e8105b9e" name="2_Phosphoglycolate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C2H2O6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3" hasOnlySubstanceUnits="true" id="M_thr_L_e" metaid="_7ed40c3c-689a-4997-b5ad-0079ba185554" name="L_Threonine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H9NO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3" hasOnlySubstanceUnits="true" id="M_thr_L_c" metaid="ccef9837-5d96-4e60-9c0c-2672a5629645" name="L_Threonine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H9NO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H25O2" hasOnlySubstanceUnits="true" id="M_ttdcea_p" metaid="f59f3bc5-3c3c-4fd6-ae5b-939942a79ce0" name="tetradecenoate__n_C14_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C14H25O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8O4" hasOnlySubstanceUnits="true" id="M_2ippm_c" metaid="d51257c2-db77-41ea-9b03-b8d41edcae98" name="2_Isopropylmaleate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H8O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO7P" hasOnlySubstanceUnits="true" id="M_glu5p_c" metaid="_4523a949-71c1-409d-9cba-ec22cd14f73c" name="L_Glutamate_5_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H8NO7P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4" hasOnlySubstanceUnits="true" id="M_26dap_M_e" metaid="_560a0eeb-b33c-4ace-aef9-bcac1be88ff4" name="M_26dap_M_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H14N2O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14NO5" hasOnlySubstanceUnits="true" id="M_gam_p" metaid="_7d19cc7c-930d-466e-845e-2aedfc790de2" name="M_gam_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H14NO5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H27N7O14P2" hasOnlySubstanceUnits="true" id="M_nadh_c" metaid="feac70b0-8dd4-49dd-9afb-0fc93df5401c" name="Nicotinamide_adenine_dinucleotide___reduced" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C21H27N7O14P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H25O2" hasOnlySubstanceUnits="true" id="M_ttdcea_e" metaid="bafb266d-7642-47fc-bdc2-40a2f41bf73b" name="tetradecenoate__n_C14_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C14H25O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C63H103NO12P2" hasOnlySubstanceUnits="true" id="M_unaga_c" metaid="_97140357-6131-49e4-9c24-ca9e51a3081f" name="M_unaga_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C63H103NO12P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaphe_c" metaid="_36e668f0-8836-43fc-b8c4-e22366d250a1" name="tRNA_Phe_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O6P" hasOnlySubstanceUnits="true" id="M_damp_c" metaid="f801f755-6314-40e9-9e9d-68dd8967bcbf" name="dAMP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H12N5O6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4" hasOnlySubstanceUnits="true" id="M_26dap_M_p" metaid="_8537f091-4c5b-4e94-9386-71ef84199284" name="M_26dap_M_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H14N2O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H25O2" hasOnlySubstanceUnits="true" id="M_ttdcea_c" metaid="_7387439c-8c10-4deb-b715-adda9dd0959a" name="M_ttdcea_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C14H25O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14NO5" hasOnlySubstanceUnits="true" id="M_gam_e" metaid="bf3397ff-7c27-49cf-a5e5-8f48f161aba5" name="M_gam_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H14NO5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O4" hasOnlySubstanceUnits="true" id="M_din_c" metaid="_9c2d087d-1c06-4a51-9bc1-8b8202068d0c" name="Deoxyinosine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H12N4O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H2O7P" hasOnlySubstanceUnits="true" id="M_3php_c" metaid="_0fb5b963-9894-4c7e-900d-7d5b7f4ccbb1" name="3_Phosphohydroxypyruvate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H2O7P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4" hasOnlySubstanceUnits="true" id="M_26dap_M_c" metaid="_6b4708cc-8d37-4523-a33a-8a3f548e9865" name="meso_2_6_Diaminoheptanedioate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H14N2O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7NO3" hasOnlySubstanceUnits="true" id="M_aspsa_c" metaid="_1995c6c7-5118-4172-82bb-296c56d148c8" name="L_Aspartate_4_semialdehyde" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H7NO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="NO" hasOnlySubstanceUnits="true" id="M_no_c" metaid="f5066035-7862-4549-9d2b-5e71f281bf18" name="Nitric_oxide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: NO</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H74O3" hasOnlySubstanceUnits="true" id="M_2ommbl_c" metaid="_40ed71e3-12af-489c-a5e3-a5ba53cb72bc" name="2_Octaprenyl_3_methyl_6_methoxy__1_4_benzoquinol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C48H74O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25N4O8" hasOnlySubstanceUnits="true" id="M_LalaDgluMdap_p" metaid="e73ed5ad-98a2-4070-80bc-d3ece99cd822" name="L_alanine_D_glutamate_meso_2_6_diaminoheptanedioate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15H25N4O8</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="NO" hasOnlySubstanceUnits="true" id="M_no_e" metaid="a0e6dc03-ad15-426d-9a8e-80908dccacac" name="Nitric_oxide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: NO</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25N4O8" hasOnlySubstanceUnits="true" id="M_LalaDgluMdap_c" metaid="_8624a039-983f-4473-82b6-1b7be44491fa" name="L_alanine_D_glutamate_meso_2_6_diaminoheptanedioate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15H25N4O8</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CO" hasOnlySubstanceUnits="true" id="M_co_c" metaid="f711aaca-47ad-450e-8cca-6070cf65cd51" name="M_co_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: CO</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O10P2" hasOnlySubstanceUnits="true" id="M_dcdp_c" metaid="d547ceea-a425-42bc-87d6-39f4026f90a9" name="dCDP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H12N3O10P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2" hasOnlySubstanceUnits="true" id="M_for_e" metaid="_1cf5bbb7-1e75-4de6-bf05-dc6db17d2a86" name="Formate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: CHO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H77N1O10P1" hasOnlySubstanceUnits="true" id="M_ps181_c" metaid="b0f4bfe5-188c-46b3-a87f-2c85f2a79d71" name="phosphatidylserine__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C42H77N1O10P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C87H139N7O23P2" hasOnlySubstanceUnits="true" id="M_uagmda_c" metaid="_52361ad1-ff9e-4601-b62f-10d13922c6b9" name="Undecaprenyl_diphospho_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_alanine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C87H139N7O23P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O11P2" hasOnlySubstanceUnits="true" id="M_gdp_c" metaid="_4d576e1f-6b4a-47cc-963f-9390631ffd78" name="GDP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H12N5O11P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O14P3" hasOnlySubstanceUnits="true" id="M_ctp_c" metaid="e2a3d3fa-1d81-45c3-8f1b-92f4ffeecca8" name="CTP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H12N3O14P3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4S" hasOnlySubstanceUnits="true" id="M_cyst_L_c" metaid="_04430647-1956-47c6-b6e4-6ddb82c1762f" name="L_Cystathionine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H14N2O4S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2" hasOnlySubstanceUnits="true" id="M_for_c" metaid="_90d52229-a7c1-4b06-b990-b044c20d6001" name="Formate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: CHO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H22N2O17P2" hasOnlySubstanceUnits="true" id="M_udpg_c" metaid="_25040098-e003-4d31-b33b-a7110bc635b2" name="UDPglucose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C15H22N2O17P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8O14P3" hasOnlySubstanceUnits="true" id="M_prpp_c" metaid="_1fa598cf-8d1c-40fa-ae87-674bb649493b" name="5_Phospho_alpha_D_ribose_1_diphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H8O14P3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10N5O" hasOnlySubstanceUnits="true" id="M_preq1_c" metaid="_7561f96b-0fd2-4731-9323-d56c511ab333" name="7_aminomethyl_7_deazaguanine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H10N5O</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C73H132O17P2" hasOnlySubstanceUnits="true" id="M_clpn161_p" metaid="_563f51c7-0c46-4fc5-8a8d-ba9a4903ad18" name="cardiolipin__tetrahexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C73H132O17P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe3_e" metaid="_48392e55-55a3-43d1-b536-869f6a74fd42" name="Iron_3_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Fe</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H56O5" hasOnlySubstanceUnits="true" id="M_12dgr141_p" metaid="_754f9919-8169-46b9-8786-2863fde130ee" name="M_12dgr141_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C31H56O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe3_c" metaid="_8a3ed28f-207c-43fe-b93d-1cc888d93a36" name="Iron_3_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Fe</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H20NO6P" hasOnlySubstanceUnits="true" id="M_g3pc_p" metaid="_3038c5c8-ce15-40c6-abc5-8979b9a20954" name="sn_Glycero_3_phosphocholine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H20NO6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H72O3" hasOnlySubstanceUnits="true" id="M_2ombzl_c" metaid="_198940b7-84bf-4c2e-8459-5c043ce406c2" name="2_Octaprenyl_6_methoxy_1_4_benzoquinol" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C47H72O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H33N2O8PRS" hasOnlySubstanceUnits="true" id="M_toct2eACP_c" metaid="a191ac13-d59a-4a6b-ae86-5a90fba15916" name="trans_Oct_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C19H33N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C120H186N24O63" hasOnlySubstanceUnits="true" id="M_murein5p5p5p_p" metaid="_58b3d38e-2db7-4756-83ac-4ccc4b40fed5" name="three_linked_disacharide_pentapeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C120H186N24O63</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10NO2SR" hasOnlySubstanceUnits="true" id="M_fmettrna_c" metaid="be2f4cde-d70c-4406-8a4e-b5a64ac4fcd0" name="N_Formylmethionyl_tRNA" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H10NO2SR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="NO" hasOnlySubstanceUnits="true" id="M_no_p" metaid="b5ab317d-edc9-4068-9a7a-7877a6a0be75" name="Nitric_oxide" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: NO</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H33N7O19P3S" hasOnlySubstanceUnits="true" id="M_malcoa_c" metaid="e598fbb1-d731-4b58-ac81-16ff15473763" name="Malonyl_CoA" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C24H33N7O19P3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe3_p" metaid="a6c68052-dae6-45cc-8564-bfa30186a4a8" name="Iron_3_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: Fe</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="X" hasOnlySubstanceUnits="true" id="M_dsbaox_p" metaid="_301d5e8f-ca9f-481d-8160-a26c73c5f724" name="periplasmic_protein_disulfide_isomerase_I__oxidized_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: X</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H35O7P1" hasOnlySubstanceUnits="true" id="M_1hdec9eg3p_c" metaid="f10511bc-e638-4271-9657-1a007c59f626" name="1_hexadec_9_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C19H35O7P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H3O3" hasOnlySubstanceUnits="true" id="M_pyr_e" metaid="_2d2e9441-87cd-4cb5-9dae-d9b322fab05c" name="Pyruvate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H3O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39O7P1" hasOnlySubstanceUnits="true" id="M_1odec11eg3p_c" metaid="_355949af-0df1-4d5d-9200-f9726a162b09" name="1_octadec_11_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C21H39O7P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H3O3" hasOnlySubstanceUnits="true" id="M_pyr_c" metaid="_7a730f38-2843-43f2-a9c2-db9dbd8454a6" name="Pyruvate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H3O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9NO8P" hasOnlySubstanceUnits="true" id="M_acg5p_c" metaid="_9587ca03-006b-4462-bba4-1653f9d3be4c" name="N_Acetyl_L_glutamyl_5_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H9NO8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO4" hasOnlySubstanceUnits="true" id="M_asp_L_c" metaid="_8ef34f64-9157-434e-9d4e-2f71a589e3a1" name="L_Aspartate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H6NO4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO4" hasOnlySubstanceUnits="true" id="M_asp_L_e" metaid="_97882726-764d-40b7-8ecd-54c5ae404ee5" name="L_Aspartate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H6NO4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H89O4P" hasOnlySubstanceUnits="true" id="M_udcpp_c" metaid="fbdecdc5-da38-4485-9402-e37a7ee8e96d" name="Undecaprenyl_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C55H89O4P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="H" hasOnlySubstanceUnits="true" id="M_h_p" metaid="dad4a909-6ffc-4ebb-a221-6e8a92044868" name="proton_H_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: H</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_L_p" metaid="_43a0d9fd-6b9b-4ece-a292-f121ca1df4ed" name="L_Alanine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H4NO2" hasOnlySubstanceUnits="true" id="M_nac_e" metaid="_43e8eaa8-5a8e-4ab1-9f04-6aa38022fcc0" name="Nicotinate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H4NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3" hasOnlySubstanceUnits="true" id="M_glu5sa_c" metaid="_0902e050-92cb-4616-b47f-da9cba6a8230" name="L_Glutamate_5_semialdehyde" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H9NO3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H4NO2" hasOnlySubstanceUnits="true" id="M_nac_c" metaid="c2dbb7ce-9fe2-454a-af2e-5fb6ab06ed23" name="Nicotinate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H4NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="X" hasOnlySubstanceUnits="true" id="M_grxox_c" metaid="fc14c6e0-1cb3-43ed-bf25-0050931862ea" name="glutaredoxin__oxidized_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: X</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H72O5" hasOnlySubstanceUnits="true" id="M_12dgr181_c" metaid="_37ab8510-c554-4d80-877b-373eb15f23bf" name="1_2_Diacyl_sn_glycerol__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C39H72O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H4NO2" hasOnlySubstanceUnits="true" id="M_nac_p" metaid="a45e0051-33de-4c18-9c02-cb86aed92e9c" name="Nicotinate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H4NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H89O4P" hasOnlySubstanceUnits="true" id="M_udcpp_p" metaid="_07c547ef-ba13-4bff-bbab-46534805b2a6" name="Undecaprenyl_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C55H89O4P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H72O5" hasOnlySubstanceUnits="true" id="M_12dgr181_p" metaid="_7df07bcf-bf48-4acf-a654-02364352ec1e" name="M_12dgr181_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C39H72O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H31N9O15P2" hasOnlySubstanceUnits="true" id="M_fad_c" metaid="cd16f790-67a3-4fc2-a2cd-aecf6e72c44a" name="Flavin_adenine_dinucleotide_oxidized" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C27H31N9O15P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O7P2" hasOnlySubstanceUnits="true" id="M_dmpp_c" metaid="b2544a1f-0dc7-49d5-9a1b-18fa03419b09" name="Dimethylallyl_diphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H9O7P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO7P" hasOnlySubstanceUnits="true" id="M_4pasp_c" metaid="_53e3625c-2d16-4306-9cb8-acf6724f9cd6" name="4_Phospho_L_aspartate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H6NO7P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H13N6O3" hasOnlySubstanceUnits="true" id="M_dhpt_c" metaid="_0c240f4f-7f99-4dbc-ac4b-d27d264700ae" name="Dihydropteroate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C14H13N6O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ocmrs7eACP_c" metaid="e8804b0a-f001-40a8-b73c-7f148cd1c30e" name="3_oxo_cis_myristol_7_eoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C25H43N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO3R" hasOnlySubstanceUnits="true" id="M_glutrna_c" metaid="c63b44f5-a227-40a5-8110-461e7664c5e2" name="L_Glutamyl_tRNA_Glu_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H8NO3R</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O5" hasOnlySubstanceUnits="true" id="M_oaa_c" metaid="_54e0d9f5-b91e-48f1-b964-c6d4504b8933" name="Oxaloacetate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H2O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_L_c" metaid="a136a98d-77aa-4926-b835-cb7b7364bd5b" name="L_Alanine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O6" hasOnlySubstanceUnits="true" id="M_xtsn_c" metaid="_13634181-c76a-4a81-b729-e1e18323b2ec" name="Xanthosine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H12N4O6</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O5" hasOnlySubstanceUnits="true" id="M_oaa_e" metaid="_39f1b8aa-d3a3-4cb2-84a8-96c9406e664e" name="M_oaa_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H2O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaala_c" metaid="_241262b3-1524-4949-b2f2-307c77e80759" name="tRNA_Ala_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O3" hasOnlySubstanceUnits="true" id="M_3hpp_p" metaid="_1cd48d3e-3831-4e76-ac5c-b6237e335ed3" name="3_Hydroxypropanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H5O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_L_e" metaid="e2883b30-80ea-47a4-a3a5-03271a3893cd" name="L_Alanine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_mi1p_D_c" metaid="f1cf004a-6ae1-4dfa-8855-6d68f21c58fe" name="1D_myo_Inositol_1_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H11O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6NO5S2" hasOnlySubstanceUnits="true" id="M_scys_L_c" metaid="_7ebc2b90-6180-45f7-bd7b-7121cc072a5e" name="S_Seleno_L_cysteine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H6NO5S2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O5" hasOnlySubstanceUnits="true" id="M_oaa_p" metaid="_0c6ba5c2-a68f-4439-9bb4-e7b1077b2030" name="M_oaa_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H2O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N3O9P" hasOnlySubstanceUnits="true" id="M_5aizc_c" metaid="e0424e3d-345a-4d11-881b-4500f38d4b43" name="5_amino_1__5_phospho_D_ribosyl_imidazole_4_carboxylate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C9H11N3O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaval_c" metaid="_9307e0c3-9ddb-4e62-ae32-9693117c070e" name="tRNA_Val_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H7O4" hasOnlySubstanceUnits="true" id="M_dhna_c" metaid="c6a93da8-05cc-4361-bfec-283bfdd5c597" name="M_dhna_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C11H7O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51O8P1" hasOnlySubstanceUnits="true" id="M_pa120_p" metaid="e3fff18b-7796-462c-98e1-3d485f513e96" name="1_2_didodecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C27H51O8P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O3" hasOnlySubstanceUnits="true" id="M_3hpp_e" metaid="b0d55aa8-bf10-42c8-b8ea-123b123a6cdf" name="3_Hydroxypropanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H5O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H" hasOnlySubstanceUnits="true" id="M_h_c" metaid="_68418409-f335-431c-8996-4d0f8aa940b0" name="proton_H_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: H</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O3" hasOnlySubstanceUnits="true" id="M_3hpp_c" metaid="c5750266-8367-4dcd-b8b6-0c79a496084e" name="3_Hydroxypropanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H5O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaglu_c" metaid="d6f2c2e1-8337-449e-a46c-53bb916b88db" name="tRNA__Glu_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_gal1p_c" metaid="f6679c5a-159e-4867-a60f-268f845fd101" name="alpha_D_Galactose_1_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H11O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="H" hasOnlySubstanceUnits="true" id="M_h_e" metaid="f1b6cbf1-69eb-4bd8-bc37-e876e4dc85e7" name="proton_H_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: H</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H3O7" hasOnlySubstanceUnits="true" id="M_osucc_c" metaid="_4a139b8b-b190-4e29-8295-00af65fb89c0" name="M_osucc_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H3O7</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="XH" hasOnlySubstanceUnits="true" id="M_flxso_c" metaid="_140e86df-cba4-483b-8e4d-ea8c89da50a2" name="M_flxso_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: XH</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51O8P1" hasOnlySubstanceUnits="true" id="M_pa120_c" metaid="a35ecd9e-5d62-4720-9a48-86c83d293bd9" name="1_2_didodecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C27H51O8P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O3S2" hasOnlySubstanceUnits="true" id="M_tsul_c" metaid="d5bf1430-b236-471e-bffd-330ad08312c6" name="Thiosulfate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: O3S2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N2O2" hasOnlySubstanceUnits="true" id="M_lys_L_c" metaid="fa6e293e-3fc4-40c4-b78f-a3ceef2b3e7d" name="L_Lysine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H15N2O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N2O2" hasOnlySubstanceUnits="true" id="M_lys_L_e" metaid="_4ea2de50-4355-4717-98d8-2977165565eb" name="L_Lysine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H15N2O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="O3S2" hasOnlySubstanceUnits="true" id="M_tsul_e" metaid="b17c51b1-e8d8-4454-8a75-5cac7f4af518" name="Thiosulfate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: O3S2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="HO3P" hasOnlySubstanceUnits="true" id="M_ppt_p" metaid="f0b9118e-7dd4-4e5b-a9a9-1599f516994b" name="M_ppt_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HO3P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4O5" hasOnlySubstanceUnits="true" id="M_akg_c" metaid="ef5bb962-1082-46f1-90e2-7b6c96207e48" name="2_Oxoglutarate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H4O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O15P3" hasOnlySubstanceUnits="true" id="M_xtp_c" metaid="_4c1d2621-fb1a-4c64-96df-a2c128dc8ed0" name="XTP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H11N4O15P3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8N2O2" hasOnlySubstanceUnits="true" id="M_acybut_c" metaid="_409ab852-6cdf-4bd0-a2b1-99105412ba43" name="gamma_Amino_gamma_cyanobutanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H8N2O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NOR" hasOnlySubstanceUnits="true" id="M_protrna_c" metaid="_12a0bbef-367e-4a3f-a6ce-427bceda6fd3" name="L_Prolyl_tRNA_Pro_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H9NOR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="O3S2" hasOnlySubstanceUnits="true" id="M_tsul_p" metaid="_3b16619b-907b-45e5-a6da-20824985c4e5" name="Thiosulfate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: O3S2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H39N4O16" hasOnlySubstanceUnits="true" id="M_scl_c" metaid="c7883cb2-fde3-45fa-91b6-770f6b03edcb" name="sirohydrochlorin" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C42H39N4O16</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8O5" hasOnlySubstanceUnits="true" id="M_3c4mop_c" metaid="d5d937ae-07a7-41fa-a701-79824c479f48" name="3_Carboxy_4_methyl_2_oxopentanoate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H8O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N2O11P2" hasOnlySubstanceUnits="true" id="M_dtdp_c" metaid="eb377850-c371-43a8-9858-d993a35f49e9" name="dTDP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H13N2O11P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N2O2" hasOnlySubstanceUnits="true" id="M_lys_L_p" metaid="_2e07cfe9-2dca-49f6-b2a4-e17cae15f282" name="L_Lysine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H15N2O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4O5" hasOnlySubstanceUnits="true" id="M_akg_e" metaid="_6411d276-b49e-4441-9c4c-c94102396cce" name="2_Oxoglutarate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H4O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H12N2O5P" hasOnlySubstanceUnits="true" id="M_pyam5p_c" metaid="f650fd4e-8782-49c2-bda0-c40585363fee" name="Pyridoxamine_5__phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H12N2O5P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NOR" hasOnlySubstanceUnits="true" id="M_alatrna_c" metaid="e56d57ec-8f7a-440b-a12b-6e4631b95919" name="L_Alanyl_tRNA_Ala_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7NOR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4O5" hasOnlySubstanceUnits="true" id="M_akg_p" metaid="a67f052f-35bd-43c1-adb8-4e43508bf222" name="2_Oxoglutarate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H4O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H46N7O17P3S" hasOnlySubstanceUnits="true" id="M_occoa_c" metaid="_0f007fc3-d373-4035-a2a1-4ea49468e43a" name="Octanoyl_CoA__n_C8_0CoA_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C29H46N7O17P3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O12P2" hasOnlySubstanceUnits="true" id="M_tagdp_D_c" metaid="_894c8e6c-31b5-4de0-bf03-4652ee16400b" name="D_Tagatose_1_6_biphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H10O12P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H33N2O10PRS" hasOnlySubstanceUnits="true" id="M_pmeACP_c" metaid="db986ad5-99cc-40d9-9744-16526c914d14" name="Pimeloyl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C19H33N2O10PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O8P" hasOnlySubstanceUnits="true" id="M_imp_c" metaid="d69bee01-9927-4531-8711-2d454cad6a4a" name="IMP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H11N4O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N6O5Se" hasOnlySubstanceUnits="true" id="M_seahcys_c" metaid="_4258087e-c242-4d51-9ebb-48744feb508d" name="Se_Adenosylselenohomocysteine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C14H20N6O5Se</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H82O10P1" hasOnlySubstanceUnits="true" id="M_pg180_c" metaid="_96c00e78-4cd1-43d7-8325-80821e27a87e" name="Phosphatidylglycerol__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C42H82O10P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H33N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ooctACP_c" metaid="c85f425a-ae23-4a02-b515-8ba08eda764e" name="3_Oxooctanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C19H33N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H29N2O11PRS" hasOnlySubstanceUnits="true" id="M_hgmeACP_c" metaid="_6e93e55a-7e7f-4345-9c06-863a26d45a85" name="3_Hydroxyglutaryl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C17H29N2O11PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17O7P2" hasOnlySubstanceUnits="true" id="M_grdp_c" metaid="_49fb8505-c10b-486b-82f3-5692426ba994" name="Geranyl_diphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H17O7P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H23N5O16P2" hasOnlySubstanceUnits="true" id="M_gdpmann_c" metaid="de438222-54cc-4726-952e-75035bf84528" name="GDP_D_mannose" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C16H23N5O16P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H3O3" hasOnlySubstanceUnits="true" id="M_pyr_p" metaid="c4099479-3078-4c0b-8bff-7948647ffa56" name="Pyruvate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H3O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HS2R" hasOnlySubstanceUnits="true" id="M_iscssh_c" metaid="_5ba18a87-4bba-4353-95f1-513b68844dfa" name="IscS_with_bound_sulfur" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HS2R</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12O13P2" hasOnlySubstanceUnits="true" id="M_s17bp_c" metaid="dba98b8f-c61e-49d1-a284-4714f266848d" name="M_s17bp_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H12O13P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H82O10P1" hasOnlySubstanceUnits="true" id="M_pg180_p" metaid="_6bd73a39-fbae-4d25-bdc5-5fd6441fda1d" name="Phosphatidylglycerol__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C42H82O10P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47N2O8PRS" hasOnlySubstanceUnits="true" id="M_myrsACP_c" metaid="df44ad25-ac95-45d0-9647-879f707a7471" name="Myristoyl_ACP__n_C14_0ACP_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C25H47N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H56N8O27P2" hasOnlySubstanceUnits="true" id="M_um4p_c" metaid="a0d3e7b3-1f92-41ea-8f6c-ba87600e87fb" name="UDP_N_acetylmuramoyl_L_alanyl_D_gamma_glutamyl_meso_2_6_diaminopimelate_D_alanine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C38H56N8O27P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14NO9P" hasOnlySubstanceUnits="true" id="M_acgam6p_c" metaid="dc2c18e5-6558-4019-ad49-1e3b80ebef8c" name="N_Acetyl_D_glucosamine_6_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C8H14NO9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="XH2" hasOnlySubstanceUnits="true" id="M_dsbgrd_p" metaid="eff717fd-49e3-488e-8606-499039426a48" name="M_dsbgrd_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: XH2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_leu_L_p" metaid="_815c4d68-bc29-42b2-aee9-6e71f5fd471e" name="L_Leucine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H13NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="AsO4" hasOnlySubstanceUnits="true" id="M_aso4_c" metaid="e0a1b8f9-6211-4b7a-b8bb-01cd95f33365" name="Arsenate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: AsO4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="X" hasOnlySubstanceUnits="true" id="M_dsbcox_p" metaid="_20ca6384-7107-4748-920a-e081ce8740bf" name="protein_disulfide_isomerase_II__oxidized_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: X</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_D_c" metaid="_1d0c9062-4b33-4ade-836b-0f41149578d2" name="M_cys_D_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7NO2S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C81H148O17P2" hasOnlySubstanceUnits="true" id="M_clpn181_p" metaid="_1c51d3b9-7219-4a23-a8cd-4d419ce90c58" name="cardiolipin__tetraoctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C81H148O17P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_D_e" metaid="b01d433a-64f0-4020-a983-b8e0634c2f39" name="M_cys_D_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7NO2S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5NO4S" hasOnlySubstanceUnits="true" id="M_3sala_c" metaid="_63991681-2ab2-40a1-8153-0d0cfba427e9" name="M_3sala_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H5NO4S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_leu_L_e" metaid="_567f5eb0-dc47-4e7a-853f-e3754d6e0810" name="L_Leucine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H13NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H18N2O16P2" hasOnlySubstanceUnits="true" id="M_udpLa4o_c" metaid="_73df25c6-e744-404d-a867-5f34259d0693" name="M_udpLa4o_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C14H18N2O16P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H64O5" hasOnlySubstanceUnits="true" id="M_12dgr161_p" metaid="_82d8a338-3515-4257-84e3-2e9c6b224bb1" name="M_12dgr161_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C35H64O5</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_leu_L_c" metaid="b0ac6125-caf8-4276-8069-6f5d009bead4" name="L_Leucine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H13NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5N" hasOnlySubstanceUnits="true" id="M_bzonit_c" metaid="_75292c17-90aa-4b78-9352-2043ad74c04d" name="Benzonitrile" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C7H5N</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N3O4P" hasOnlySubstanceUnits="true" id="M_4ampm_c" metaid="_26c01e93-50ec-4b08-a1e1-191ffe0bc728" name="4_Amino_2_methyl_5_phosphomethylpyrimidine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H8N3O4P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H29N2O12" hasOnlySubstanceUnits="true" id="M_anhgm_c" metaid="_77e3b37d-7cba-4b89-94ee-8fd98c3abce5" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramic_acid" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C19H29N2O12</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H126N2O37P2" hasOnlySubstanceUnits="true" id="M_kdo2lipid4_XF_c" metaid="_60e9bc22-f9f6-4f58-8f58-98f644ba003f" name="M_kdo2lipid4_XF_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C72H126N2O37P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H114N14O40" hasOnlySubstanceUnits="true" id="M_murein5p3p_p" metaid="d096ffe1-da0f-4e1d-bd61-620f8fd34348" name="two_linked_disacharide_pentapeptide_and_tripeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C74H114N14O40</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O11P2" hasOnlySubstanceUnits="true" id="M_idp_c" metaid="_621697eb-74bf-4ad1-885c-c3c9cebb13c7" name="IDP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H11N4O11P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6NO2" hasOnlySubstanceUnits="true" id="M_1pyr5c_c" metaid="_5a7d2518-c748-4b90-b2ee-4e14720b3e61" name="1_Pyrroline_5_carboxylate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H6NO2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H126N2O37P2" hasOnlySubstanceUnits="true" id="M_kdo2lipid4_XF_e" metaid="f14e0454-e072-40c1-879e-1965b3ff0fc7" name="M_kdo2lipid4_XF_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C72H126N2O37P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H13NO9P" hasOnlySubstanceUnits="true" id="M_pran_c" metaid="_51841d19-27f5-4c5a-b36c-f035d475c09d" name="N__5_Phospho_D_ribosyl_anthranilate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C12H13NO9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_xu5p_D_c" metaid="_907b93b7-6be0-44dd-9165-b1bc108b8e60" name="D_Xylulose_5_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C5H9O8P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H22N2O10PRS" hasOnlySubstanceUnits="true" id="M_malACP_c" metaid="e3f679de-fe9b-4b89-93ca-4d57782a66e6" name="Malonyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C14H22N2O10PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H3O3" hasOnlySubstanceUnits="true" id="M_msa_c" metaid="_0d762fd3-71c4-4529-b200-7bc4f8b1f35b" name="Malonate_semialdehyde" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H3O3</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O6P" hasOnlySubstanceUnits="true" id="M_dhap_c" metaid="df0429d8-48ee-4ebd-8476-05f607e62cfb" name="Dihydroxyacetone_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H5O6P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O7" hasOnlySubstanceUnits="true" id="M_cit_c" metaid="_83a1b111-befa-49a2-84c4-ab6eb3cb52af" name="Citrate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H5O7</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H29N2O12" hasOnlySubstanceUnits="true" id="M_anhgm_p" metaid="e768bf82-dfbd-493b-b2b8-fd48dd4b3921" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramic_acid" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C19H29N2O12</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N10O19P4" hasOnlySubstanceUnits="true" id="M_ap4a_c" metaid="_51621837-3db4-461c-ba68-daa702e55f16" name="P1_P4_Bis_5__adenosyl__tetraphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C20H24N10O19P4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5N2O2" hasOnlySubstanceUnits="true" id="M_urcan_c" metaid="_5c743639-01c9-4034-88a4-fd1a3a711f30" name="Urocanate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H5N2O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O7" hasOnlySubstanceUnits="true" id="M_cit_e" metaid="_1e3735ba-e736-42df-8d6f-8a9542a04881" name="Citrate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H5O7</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H126N2O37P2" hasOnlySubstanceUnits="true" id="M_kdo2lipid4_XF_p" metaid="_865f8957-d223-4884-b75c-07b819961598" name="M_kdo2lipid4_XF_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C72H126N2O37P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H38N4O4" hasOnlySubstanceUnits="true" id="M_pppg9_c" metaid="a39d6345-6a0d-4358-9088-cf1204117095" name="Protoporphyrinogen_IX" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C34H38N4O4</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H122O61" hasOnlySubstanceUnits="true" id="M_14aglucan_e" metaid="_43ccbf86-2d88-499a-9f01-2dd79b4d4a79" name="M_14aglucan_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C72H122O61</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H122O61" hasOnlySubstanceUnits="true" id="M_14aglucan_c" metaid="_5749ed56-6e05-4901-9b4b-b5dfee5733c8" name="1_4_alpha_D_Glucosyl_n" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C72H122O61</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NOR" hasOnlySubstanceUnits="true" id="M_glytrna_c" metaid="_4a83b6ff-cd79-43e3-8aa4-8e0d9bfde226" name="Glycyl_tRNA_Gly_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C2H5NOR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49N2O8PRS" hasOnlySubstanceUnits="true" id="M_hdeACP_c" metaid="da832ba9-9348-4a4b-9fcf-8128e12a24f7" name="cis_hexadec_9_enoyl__acyl_carrier_protein___n_C16_1_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C27H49N2O8PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O9P2" hasOnlySubstanceUnits="true" id="M_dadp_c" metaid="_0ea2039b-4061-4345-8af5-ada4eac793ec" name="dADP" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H12N5O9P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H122O61" hasOnlySubstanceUnits="true" id="M_14aglucan_p" metaid="_906cd203-bd17-4164-9158-fbbed1e862ac" name="M_14aglucan_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C72H122O61</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O7" hasOnlySubstanceUnits="true" id="M_cit_p" metaid="d14e510b-4acd-44f7-88e3-d883529a9812" name="Citrate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H5O7</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O2" hasOnlySubstanceUnits="true" id="M_hxa_c" metaid="efbea65b-9d47-4614-8b70-9ca95f446dc9" name="Hexanoate__n_C6_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H11O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnatyr_c" metaid="_1bd65fd4-64bf-4feb-a711-1460105a0c36" name="tRNA_Tyr_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="CH3O3S" hasOnlySubstanceUnits="true" id="M_mso3_e" metaid="fa3f8603-57c4-4e14-a648-8cd4efaddbc4" name="methanesulfonate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: CH3O3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CH3O3S" hasOnlySubstanceUnits="true" id="M_mso3_c" metaid="ee1ab707-2158-424d-9184-aae220a5e737" name="methanesulfonate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: CH3O3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4N2O2" hasOnlySubstanceUnits="true" id="M_ura_c" metaid="c46235c5-0aa5-444e-83e7-94c55e9f4e91" name="Uracil" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H4N2O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O14P" hasOnlySubstanceUnits="true" id="M_chtbs6p_c" metaid="_9bdd4880-3d07-4a9a-a72b-5cef7fac4128" name="M_chtbs6p_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C16H27N2O14P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H25N3O17P2" hasOnlySubstanceUnits="true" id="M_uacgam_c" metaid="b30f5402-fc0a-4542-81ec-6eb62f3d22d1" name="UDP_N_acetyl_D_glucosamine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C17H25N3O17P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4N2O2" hasOnlySubstanceUnits="true" id="M_ura_e" metaid="ccfc70ef-41a5-42a6-81c1-b46663f039d8" name="M_ura_e" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H4N2O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H25N3O16P2" hasOnlySubstanceUnits="true" id="M_udpacfuc_c" metaid="d3296540-f850-4c00-8d52-8a6584778037" name="M_udpacfuc_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C17H25N3O16P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O2" hasOnlySubstanceUnits="true" id="M_hxa_p" metaid="aabefeb0-b032-4613-90e2-50e217087b0b" name="Hexanoate__n_C6_0_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H11O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="CH3O3S" hasOnlySubstanceUnits="true" id="M_mso3_p" metaid="a6f41b1d-5495-4a4a-81c6-a2f8f207215c" name="methanesulfonate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: CH3O3S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4N2O2" hasOnlySubstanceUnits="true" id="M_ura_p" metaid="_8bdfb689-18da-4a6b-8278-2a2c65065ca6" name="M_ura_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H4N2O2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H59O8P1" hasOnlySubstanceUnits="true" id="M_pa140_c" metaid="_5a4391db-b9ee-403d-bbbf-69573a3f3e23" name="1_2_ditetradecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C31H59O8P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N5O10P2" hasOnlySubstanceUnits="true" id="M_pap_c" metaid="_6eda61d5-8a33-4a54-b717-9f489f619aca" name="Adenosine_3__5__bisphosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C10H11N5O10P2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnapro_c" metaid="_6922d10c-bdf3-4ac4-9008-42f8753800e1" name="tRNA_Pro_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: HR</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_D_p" metaid="_4824fa5f-73d8-45e7-b781-7d9390953608" name="M_cys_D_p" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C3H7NO2S</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H14N2" hasOnlySubstanceUnits="true" id="M_ptrc_c" metaid="c453ad0a-9c46-44c6-99fc-d1a00c8a4979" name="Putrescine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H14N2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H14N2" hasOnlySubstanceUnits="true" id="M_ptrc_e" metaid="_9a6a8e7b-11d7-443a-a435-e3864359232b" name="Putrescine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H14N2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H16N4O4PS" hasOnlySubstanceUnits="true" id="M_thmmp_c" metaid="_13decc39-a41f-4a2e-a73a-36731e84d6d0" name="Thiamin_monophosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C12H16N4O4PS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ocpalm9eACP_c" metaid="_0884f9ed-92ea-4902-b209-cc1a46219385" name="3_oxo_cis_palm_9_eoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C27H47N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_g6p_c" metaid="c4353cf2-27e9-4c56-b9ac-e5ee8c23e8dc" name="D_Glucose_6_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C6H11O9P</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H59O8P1" hasOnlySubstanceUnits="true" id="M_pa140_p" metaid="_5d254239-e98b-4a67-bddc-19ff12646b0f" name="1_2_ditetradecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C31H59O8P1</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hmrsACP_c" metaid="_70619344-3e7b-4386-bb9f-0daba264f997" name="R__3_Hydroxytetradecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C25H47N2O9PRS</p> </body> </notes> </species> <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H14N2" hasOnlySubstanceUnits="true" id="M_ptrc_p" metaid="_86f3a98d-4598-4a29-85f5-f393f0e6e519" name="Putrescine" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C4H14N2</p> </body> </notes> </species> <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H21N5O15P2" hasOnlySubstanceUnits="true" id="M_gdp4d6dm_c" metaid="a954935d-5ef2-4be6-9881-cd849b42fd81" name="M_gdp4d6dm_c" sboTerm="SBO:0000240"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>formula: C16H21N5O15P2</p> </body> </notes> </species> </listOfSpecies> <listOfParameters> <parameter constant="true" id="UPPER_BOUND_99999_0" units="mmol_per_gDW_per_hr" value="99999"/> <parameter constant="true" id="LOWER_BOUND_0_0" units="mmol_per_gDW_per_hr" value="0"/> <parameter constant="true" id="LOWER_BOUND_99999_0" units="mmol_per_gDW_per_hr" value="-99999"/> </listOfParameters> <listOfReactions> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUPRT" metaid="_14369fd2-8f83-4ef5-a5bc-80f277a1cbbf" name="glutamine_phosphoribosyldiphosphate_amidotransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_000770</p> <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> <p>EC_NUMBER: 2.4.2.14</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_14369fd2-8f83-4ef5-a5bc-80f277a1cbbf"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.14"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000770"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pram_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG180abcpp" metaid="_309b13d3-cbb6-4182-ac1d-46340890b347" name="phosphatidylglycerol_transport_via_ABC_system__n_C18_0__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_309b13d3-cbb6-4182-ac1d-46340890b347"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pg180_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pg180_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HYXNtex" metaid="fc02e5bf-c6fd-48eb-8077-c7b72c8d14ea" name="Hypoxanthine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#fc02e5bf-c6fd-48eb-8077-c7b72c8d14ea"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_hxan_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_hxan_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LEUtex" metaid="_4335a7b1-bbd5-44dd-9c9a-ebcc1fa9676b" name="L_leucine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4335a7b1-bbd5-44dd-9c9a-ebcc1fa9676b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_leu_L_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_leu_L_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METTRS" metaid="ad24d68c-cf9b-45ab-abd3-56446f8d42ed" name="Methionyl_tRNA_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006950</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 6.1.1.10</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ad24d68c-cf9b-45ab-abd3-56446f8d42ed"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.10"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006950"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_trnamet_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_mettrna_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_glu_L_e" metaid="_80df0d73-fb34-4b1b-b43b-cb5a2bc7c012" name="R_EX_glu_L_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_80df0d73-fb34-4b1b-b43b-cb5a2bc7c012"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_glu_L_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUCYS" metaid="_82876c4f-119d-442e-8003-fd0b8b8c557f" name="gamma_glutamylcysteine_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003340</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 6.3.2.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_82876c4f-119d-442e-8003-fd0b8b8c557f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003340"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glucys_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRAMPC" metaid="e5b61c92-a688-4271-af80-91f6cc7df401" name="phosphoribosyl_AMP_cyclohydrolase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020260</p> <p>SUBSYSTEM: Histidine_Metabolism</p> <p>EC_NUMBER: 3.5.4.19</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e5b61c92-a688-4271-af80-91f6cc7df401"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.19"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020260"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_prbamp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_prfp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_VALtex" metaid="_0813fcbe-e60c-4afd-ab14-2197c512b3a7" name="L_valine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0813fcbe-e60c-4afd-ab14-2197c512b3a7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_val_L_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_val_L_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE141abcpp" metaid="d06025bc-2fe5-4f60-9f7f-554494955a65" name="phosphatidylethanolamine_transport_via_ABC_system__n_C14_1__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d06025bc-2fe5-4f60-9f7f-554494955a65"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pe141_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pe141_p" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_MEOH" metaid="_103d41e9-a0d8-48d4-998c-2885cb732810" name="R_DM_MEOH" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_103d41e9-a0d8-48d4-998c-2885cb732810"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_meoh_e" stoichiometry="1"/> </listOfReactants> <listOfProducts/> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CU2tex" metaid="c67872a0-b10c-4820-85dc-1079bd7171f9" name="copper__Cu_2__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c67872a0-b10c-4820-85dc-1079bd7171f9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cu2_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cu2_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYC3Ptex" metaid="_24207fcd-c1e8-4a47-9993-82ceb08ce6a3" name="sn_Glycerol_3_phosphate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_24207fcd-c1e8-4a47-9993-82ceb08ce6a3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glyc3p_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glyc3p_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SELGTHR" metaid="e1e2fe01-c3b9-4fa2-9d8c-63d260a5f5df" name="R_SELGTHR" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e1e2fe01-c3b9-4fa2-9d8c-63d260a5f5df"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gthrd_c" stoichiometry="4"/> <speciesReference constant="true" species="M_slnt_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gthox_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="3"/> <speciesReference constant="true" species="M_dgslnt_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DXPS" metaid="_92a20d90-2d2e-469d-80f1-b4ef7ed6ae3a" name="1_deoxy_D_xylulose_5_phosphate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020600</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.2.1.7</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_92a20d90-2d2e-469d-80f1-b4ef7ed6ae3a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.2.1.7"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020600"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DMPO_LACCASE" metaid="f394e9de-d142-4627-8a3e-83ae22843555" name="Dimethoxyphenol_oxidase_laccase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_013090</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 1.10.3.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f394e9de-d142-4627-8a3e-83ae22843555"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.10.3.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013090"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dmoxpol_c" stoichiometry="4"/> <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_tmoxdpq_c" stoichiometry="4"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLTGY2pp" metaid="c93308b1-aad3-402b-a862-11afbb3fc3fd" name="murein_lytic_transglycosylase__murein4p3p___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_003940 ) OR ( XFCFBP8418_019770 )</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c93308b1-aad3-402b-a862-11afbb3fc3fd"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003940"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019770"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_murein4p3p_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_anhgm3p_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD160" metaid="_5ca3fed7-9650-46a3-b5f9-3d2379ccfba2" name="Phosphatidylserine_decarboxylase__n_C16_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 4.1.1.65</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5ca3fed7-9650-46a3-b5f9-3d2379ccfba2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ps160_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pe160_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD60" metaid="_2f4d3818-add9-4c52-bc66-934853d16392" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C6_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 4.2.1.59</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2f4d3818-add9-4c52-bc66-934853d16392"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3hhexACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thex2eACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_QULNS" metaid="_89adc41d-91eb-4b1f-9627-6c8c241e29f7" name="quinolinate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_000540</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.5.1.72</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_89adc41d-91eb-4b1f-9627-6c8c241e29f7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.72"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000540"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> <speciesReference constant="true" species="M_iasp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_quln_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NADH16pp" metaid="_981fc70e-7cb2-49e3-a7b4-5f8349994de4" name="NADH_dehydrogenase__ubiquinone_8___3_protons___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025600 AND XFCFBP8418_025610 AND XFCFBP8418_025620 AND XFCFBP8418_025630 AND XFCFBP8418_025640 AND XFCFBP8418_025650 AND XFCFBP8418_025660 AND XFCFBP8418_025670 AND XFCFBP8418_025680 AND XFCFBP8418_025690 AND XFCFBP8418_025700 AND XFCFBP8418_025720 AND XFCFBP8418_025730</p> <p>SUBSYSTEM: Oxidative_Phosphorylation</p> <p>EC_NUMBER: 1.6.5.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_981fc70e-7cb2-49e3-a7b4-5f8349994de4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.6.5.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025700"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025600"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025650"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025660"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025670"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025680"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025720"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025610"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025620"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025730"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025630"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025640"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="4"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="3"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BHEXAMD" metaid="_1b6f2247-9e71-47cc-b8ad-f4b0ece10040" name="Beta_hexosaminidase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_001510 ) OR ( XFCFBP8418_021350 )</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 3.2.1.52</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1b6f2247-9e71-47cc-b8ad-f4b0ece10040"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.52"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001510"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021350"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_chtbs_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_acgam_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MCITL2" metaid="_9ea3f7d5-e2ae-4c22-bad9-07e33c547b13" name="methylisocitrate_lyase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_022790</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 4.1.3.30</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9ea3f7d5-e2ae-4c22-bad9-07e33c547b13"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.3.30"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022790"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_micit_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PEtex" metaid="_2a13a352-80f4-40cc-8e34-d8de3874af53" name="glycero_3_phosphoethanolamine_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2a13a352-80f4-40cc-8e34-d8de3874af53"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_g3pe_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_g3pe_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPK" metaid="_0f92d4f9-8ea4-4a3d-a6b8-2dbc86ec5f98" name="aspartate_kinase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020380</p> <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> <p>EC_NUMBER: 2.7.2.4</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0f92d4f9-8ea4-4a3d-a6b8-2dbc86ec5f98"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.2.4"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020380"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_4pasp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD161" metaid="c09709b6-e435-448f-8a39-24621fed6636" name="Phosphatidylserine_decarboxylase__n_C16_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 4.1.1.65</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c09709b6-e435-448f-8a39-24621fed6636"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ps161_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pe161_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AKGt2rtex" metaid="adebd6ac-199d-4bb3-806c-78c44400a694" name="R_AKGt2rtex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#adebd6ac-199d-4bb3-806c-78c44400a694"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_akg_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_akg_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDEP4pp" metaid="_432105e1-fc64-4ad2-accf-a32b00339618" name="murein_D_D_endopeptidase__murein4px4px4p___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_432105e1-fc64-4ad2-accf-a32b00339618"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> <speciesReference constant="true" species="M_murein4px4px4p_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_murein4px4p4p_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G1PTT" metaid="_82e3a877-0072-405f-96d7-b5b8aee32c62" name="glucose_1_phosphate_thymidylyltransferase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026240</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.7.7.24</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_82e3a877-0072-405f-96d7-b5b8aee32c62"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.24"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026240"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dttp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_g1p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dtdpglu_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP120abcpp" metaid="_95955cb8-0c3d-4efc-b5d3-d271056c82c2" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C12_0__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_95955cb8-0c3d-4efc-b5d3-d271056c82c2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pgp120_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pgp120_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPS" metaid="bf5b3eb0-b23b-46c6-93dd-4e37adc2cbb2" name="phosphoenolpyruvate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_022440</p> <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> <p>EC_NUMBER: 2.7.9.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#bf5b3eb0-b23b-46c6-93dd-4e37adc2cbb2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.9.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022440"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_2MAHMP" metaid="_0d3bc6e1-faff-4cdc-98ef-b3db11a2d1fe" name="2_Methyl_4_amino_5_hydroxymethylpyrimidine_diphosphatase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003250</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0d3bc6e1-faff-4cdc-98ef-b3db11a2d1fe"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003250"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2mahmp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_4ampm_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SULtex" metaid="d9cb977b-1ed7-46f2-880c-4b9e492145be" name="R_SULtex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d9cb977b-1ed7-46f2-880c-4b9e492145be"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_so4_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_so4_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPM" metaid="_3d261807-574e-441f-8141-b58af7afcbd4" name="R_PPM" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026200</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 5.4.2.7</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3d261807-574e-441f-8141-b58af7afcbd4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.2.7"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026200"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_r1p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ORNtpp" metaid="_97b03bc1-d9f6-42f5-9213-cbc5a80501c9" name="R_ORNtpp" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007710</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_97b03bc1-d9f6-42f5-9213-cbc5a80501c9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_orn_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_orn_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLCptspp" metaid="a5036fe0-e602-4b03-8a02-61ed7ee43202" name="R_GLCptspp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a5036fe0-e602-4b03-8a02-61ed7ee43202"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glc_D_p" stoichiometry="1"/> <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_g6p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_URA_e" metaid="fd91adc6-3242-4c4f-873b-895cc743cf86" name="R_EX_URA_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#fd91adc6-3242-4c4f-873b-895cc743cf86"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_ura_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_USHDXF" metaid="e9865075-87c4-4211-acd9-1e784b54ed83" name="R_USHDXF" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_012350</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.1.2.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e9865075-87c4-4211-acd9-1e784b54ed83"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012350"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_u23ga_XF_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_lipidX_XF_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASR" metaid="_6bb0e45a-0673-4f17-8b22-2d9261e8b641" name="R_ASR" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_015110</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6bb0e45a-0673-4f17-8b22-2d9261e8b641"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015110"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gthrd_c" stoichiometry="2"/> <speciesReference constant="true" species="M_aso4_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gthox_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_aso3_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPBNGS" metaid="_202ef9f6-693d-4498-add8-ed21231eea8b" name="porphobilinogen_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_019180</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 4.2.1.24</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_202ef9f6-693d-4498-add8-ed21231eea8b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.24"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019180"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_5aop_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppbng_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM3PApp" metaid="_25b1fdbc-6f3b-48a0-8511-cb128926cb1d" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tripeptide_amidase__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011590</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: 3.5.1.28</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_25b1fdbc-6f3b-48a0-8511-cb128926cb1d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.28"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011590"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> <speciesReference constant="true" species="M_anhgm3p_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_anhgm_p" stoichiometry="1"/> <speciesReference constant="true" species="M_LalaDgluMdap_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYC3Pabc" metaid="_28e0eb51-089b-40cc-b17e-e2a1f37062ae" name="R_GLYC3Pabc" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024670</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: 3.6.3.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_28e0eb51-089b-40cc-b17e-e2a1f37062ae"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc3p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACOAR" metaid="a31cc524-015e-4a3a-81b5-41ae0b05130c" name="acetoacetyl_CoA_reductase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025580</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 1.1.1.36</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a31cc524-015e-4a3a-81b5-41ae0b05130c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.36"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025580"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_aacoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_r3hbcoa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAAD" metaid="_49d1cf96-0b01-4869-91d6-edc4d3d3de31" name="D_Amino_acid_dehydrogenase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010710</p> <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> <p>EC_NUMBER: 1.4.99.6</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_49d1cf96-0b01-4869-91d6-edc4d3d3de31"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.4.99.6"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ala_D_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARD" metaid="d312bee4-2cbd-42d8-9bae-17ee32fee20c" name="R_ARD" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020240</p> <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> <p>EC_NUMBER: 1.13.11.53</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d312bee4-2cbd-42d8-9bae-17ee32fee20c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.13.11.53"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020240"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dhmtp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_mtpp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co_c" stoichiometry="1"/> <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA180abcpp" metaid="_5091b6e2-ef92-4479-8b11-9e1d4b778674" name="phosphatidate_transport_via_ABC_system__n_C18_0__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5091b6e2-ef92-4479-8b11-9e1d4b778674"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pa180_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pa180_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD80" metaid="_77926968-2528-4de7-9b9f-0f7c44626c73" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C8_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 4.2.1.59</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_77926968-2528-4de7-9b9f-0f7c44626c73"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3hoctACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_toct2eACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP120pp" metaid="_6a689f43-ecf3-4264-b0e7-b714b4d7c095" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C14_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 3.1.3.27</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6a689f43-ecf3-4264-b0e7-b714b4d7c095"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> <speciesReference constant="true" species="M_pgp120_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> <speciesReference constant="true" species="M_pg120_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYCtpp" metaid="f2bf7fbc-77d4-4531-aea8-6f578ae146df" name="glycerol_transport_via_channel__periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020710</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f2bf7fbc-77d4-4531-aea8-6f578ae146df"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glyc_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLNTRS" metaid="_49002df7-93bb-449e-b598-c830b9a5a437" name="Glutaminyl_tRNA_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004140</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 6.1.1.18</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_49002df7-93bb-449e-b598-c830b9a5a437"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.18"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004140"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trnagln_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glntrna_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDP4KPS" metaid="a8dc7f00-c76a-4ac1-bc13-be9336ed82eb" name="UDP_4_keto_pentose_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020820</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 4.1.1.35</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a8dc7f00-c76a-4ac1-bc13-be9336ed82eb"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.35"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020820"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udpglcur_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udp4kp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASNN" metaid="_4fbdee0a-5742-4787-a3e1-55709a4b4a7a" name="L_asparaginase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024050</p> <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> <p>EC_NUMBER: 3.5.1.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4fbdee0a-5742-4787-a3e1-55709a4b4a7a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024050"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_asn_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR40" metaid="_117d8d3d-f0b7-4778-91dd-c9a830f0490b" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C4_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.100</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_117d8d3d-f0b7-4778-91dd-c9a830f0490b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_actACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3haACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACOCMT" metaid="_66369825-8159-41b0-aef5-5421b139c375" name="R_ACOCMT" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025290</p> <p>SUBSYSTEM: Glutamate_Metabolism</p> <p>EC_NUMBER: 2.1.3.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_66369825-8159-41b0-aef5-5421b139c375"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.3.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025290"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_acorn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cbp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_accitr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOAT2XF" metaid="f302aa33-53e3-478f-adb3-5467cf4fb26a" name="R_MOAT2XF" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015030</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.4.99.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f302aa33-53e3-478f-adb3-5467cf4fb26a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.99.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015030"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ckdo_c" stoichiometry="1"/> <speciesReference constant="true" species="M_kdolipid4_XF_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_kdo2lipid4_XF_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPA" metaid="_5a29b271-98c0-4cfd-910c-c667f06ba935" name="inorganic_diphosphatase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_010630 ) OR ( XFCFBP8418_012360 ) OR ( XFCFBP8418_019680 )</p> <p>SUBSYSTEM: Anaplerotic_Reactions</p> <p>EC_NUMBER: 3.6.1.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5a29b271-98c0-4cfd-910c-c667f06ba935"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019680"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012360"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD140" metaid="_01dad332-1a3c-4153-8df5-b37ea27b2473" name="Phosphatidylserine_decarboxylase__n_C14_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 4.1.1.65</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_01dad332-1a3c-4153-8df5-b37ea27b2473"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ps140_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pe140_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TRPS3r" metaid="_60f46c0e-3148-4c43-8d24-e134cba85758" name="R_TRPS3r" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003820 AND XFCFBP8418_003830</p> <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> <p>EC_NUMBER: 4.2.1.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_60f46c0e-3148-4c43-8d24-e134cba85758"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003830"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003820"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3ig3p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_indole_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IPPS" metaid="_08649866-a11a-42f5-9c63-bc67e65b4fce" name="2_isopropylmalate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_017930</p> <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> <p>EC_NUMBER: 2.3.3.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_08649866-a11a-42f5-9c63-bc67e65b4fce"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.3.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017930"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3mob_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3c3hmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLNS" metaid="bccbebed-11f0-42cd-a1d9-24cdac9ca01d" name="glutamine_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_017710</p> <p>SUBSYSTEM: Glutamate_Metabolism_</p> <p>EC_NUMBER: 6.3.1.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#bccbebed-11f0-42cd-a1d9-24cdac9ca01d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.1.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHTNA2" metaid="a33b4b51-cc6e-451d-8e71-4a5283381588" name="R_CHTNA2" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010730</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 3.2.1.14</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a33b4b51-cc6e-451d-8e71-4a5283381588"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.14"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010730"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_chitin_polymer_e" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_e" stoichiometry="49"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_chtbs_e" stoichiometry="50"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD141" metaid="_4e296aea-508c-400f-8105-5b544b9797ba" name="Phosphatidylserine_decarboxylase__n_C14_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 4.1.1.65</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4e296aea-508c-400f-8105-5b544b9797ba"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ps141_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pe141_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LYSabcpp" metaid="_051d2f7e-278f-4b19-81f8-746cc4f031ae" name="L_lysine_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: 3.6.3.21</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_051d2f7e-278f-4b19-81f8-746cc4f031ae"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.21"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_lys_L_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_lys_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_DAD_5" metaid="_49f56dfb-077f-4510-8638-b0fce0a1f7e3" name="R_DM_DAD_5" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_49f56dfb-077f-4510-8638-b0fce0a1f7e3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dad_5_c" stoichiometry="1"/> </listOfReactants> <listOfProducts/> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_FOR" metaid="_2c90897c-1dc2-4313-847b-b063fec53fee" name="R_DM_FOR" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2c90897c-1dc2-4313-847b-b063fec53fee"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_for_e" stoichiometry="1"/> </listOfReactants> <listOfProducts/> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KARA1" metaid="b0cfc4f4-6093-446d-9500-4a3e2fc3316b" name="ketol_acid_reductoisomerase__2_3_dihydroxy_3_methylbutanoate_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_017890</p> <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> <p>EC_NUMBER: 1.1.1.86</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b0cfc4f4-6093-446d-9500-4a3e2fc3316b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.86"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_23dhmb_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_alac_S_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_4PCPpp" metaid="_7c20c035-8866-4746-b496-301120428604" name="R_4PCPpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: 3.4.17.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7c20c035-8866-4746-b496-301120428604"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> <speciesReference constant="true" species="M_LalaDgluMdapDala_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_LalaDgluMdap_p" stoichiometry="1"/> <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NAabcO" metaid="_90b16213-e7d2-411d-b1ed-0013b8613160" name="R_NAabcO" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021120 AND XFCFBP8418_021130</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_90b16213-e7d2-411d-b1ed-0013b8613160"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021120"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021130"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_na1_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_na1_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_2KMBT" metaid="f1a1c730-db43-4466-a772-458b812137cd" name="R_2KMBT" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005040</p> <p>SUBSYSTEM: Methionine_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f1a1c730-db43-4466-a772-458b812137cd"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005040"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2kmb_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_2ogm_c" stoichiometry="1"/> <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPTA" metaid="e95b15cd-248a-4abb-a36f-35144913809a" name="aspartate_aminotransferase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_014480</p> <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> <p>EC_NUMBER: 2.6.1.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e95b15cd-248a-4abb-a36f-35144913809a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014480"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PAPSR" metaid="_94d10b09-024a-445a-8d66-a125d9fb50c2" name="R_PAPSR" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_002720 ) OR ( XFCFBP8418_002720 AND XFCFBP8418_013260 )</p> <p>SUBSYSTEM: Cysteine_Metabolism</p> <p>EC_NUMBER: 1.8.4.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_94d10b09-024a-445a-8d66-a125d9fb50c2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.4.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002720"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002720"/> </fbc:and> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_paps_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pap_c" stoichiometry="1"/> <speciesReference constant="true" species="M_so3_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MI1PP" metaid="_0d316631-0afb-4f33-b35e-c64235d6181e" name="myo_inositol_1_phosphatase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005240</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 3.1.3.25</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0d316631-0afb-4f33-b35e-c64235d6181e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.25"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005240"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_mi1p_D_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_inost_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRtex" metaid="_539d49b0-6c42-4f0d-a4db-99cd9e9170ec" name="L_threonine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_539d49b0-6c42-4f0d-a4db-99cd9e9170ec"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_thr_L_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_thr_L_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTPDPK" metaid="ad8b408e-94ae-44ef-9198-2abaf8be91de" name="GTP_diphosphokinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004340</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.7.6.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ad8b408e-94ae-44ef-9198-2abaf8be91de"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.6.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004340"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gdptp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IPDPS" metaid="ec6cff5d-8296-47ac-8a91-e527cab00288" name="1_hydroxy_2_methyl_2__E__butenyl_4_diphosphate_reductase__ipdp_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004660</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.17.7.4</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ec6cff5d-8296-47ac-8a91-e527cab00288"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.7.4"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004660"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2mb4p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ipdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THZPSN3" metaid="_79d778ee-f268-475b-904d-75de8270c000" name="R_THZPSN3" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011380</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.8.1.10</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_79d778ee-f268-475b-904d-75de8270c000"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.8.1.10"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011380"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dhgly_c" stoichiometry="1"/> <speciesReference constant="true" species="M_iscssh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> <speciesReference constant="true" species="M_iscs_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_4mpetz_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGDC" metaid="fa70a149-fa80-4865-a57a-8ec9bf0cab35" name="arginine_decarboxylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015380</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 4.1.1.19</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#fa70a149-fa80-4865-a57a-8ec9bf0cab35"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.19"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015380"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_agm_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CPH4S" metaid="a3fa9d7a-5460-4c20-ad12-9d3ba1c2f250" name="6_carboxy_5_6_7_8_tetrahydropterin_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015860</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 4.1.2.50</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a3fa9d7a-5460-4c20-ad12-9d3ba1c2f250"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.50"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015860"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ahdt_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_acald_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cph4_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pppi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FGLU" metaid="_81c035f4-7607-4bb9-b2c0-a35fed0105e0" name="formimidoylglutamase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Histidine_Metabolism</p> <p>EC_NUMBER: 3.5.3.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_81c035f4-7607-4bb9-b2c0-a35fed0105e0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.3.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_forglu_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_frmd_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYTRS" metaid="_7606a995-7800-4ec6-abe8-9acad743b6ef" name="Glycyl_tRNA_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_000870 AND XFCFBP8418_000880</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 6.1.1.14</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7606a995-7800-4ec6-abe8-9acad743b6ef"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.14"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000880"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000870"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_trnagly_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glytrna_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FEENTERtonex" metaid="_12a36d85-5cbd-4a3e-b15f-500bd8fa2600" name="R_FEENTERtonex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_014300 ) OR ( No_Assignment AND XFCFBP8418_014310 )</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_12a36d85-5cbd-4a3e-b15f-500bd8fa2600"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014300"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014310"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:and> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> <speciesReference constant="true" species="M_feenter_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_feenter_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MALS" metaid="_91b2e54f-265a-45e4-a8de-d215e3c74426" name="malate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Anaplerotic_Reactions</p> <p>EC_NUMBER: 2.3.3.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_91b2e54f-265a-45e4-a8de-d215e3c74426"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.3.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glx_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_mal_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_14GLUCANabcpp" metaid="c89c8704-8b34-431c-a0b6-f45ed6f5893b" name="R_14GLUCANabcpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment AND No_Assignment2 AND XFCFBP8418_004950 AND XFCFBP8418_024670</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c89c8704-8b34-431c-a0b6-f45ed6f5893b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment2"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004950"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_14aglucan_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_14aglucan_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FRUtex" metaid="d305996b-e7c1-40e5-bfa7-0ae4b7bf8e4a" name="D_fructose_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d305996b-e7c1-40e5-bfa7-0ae4b7bf8e4a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_fru_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_fru_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BTS5" metaid="d6e0e695-c2ba-4aa1-b31c-6a06dfa60da2" name="Biotin_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_014650</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.8.1.6</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d6e0e695-c2ba-4aa1-b31c-6a06dfa60da2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.8.1.6"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014650"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dtbt_c" stoichiometry="1"/> <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2fe2s_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dad_5_c" stoichiometry="1"/> <speciesReference constant="true" species="M_btn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2fe1s_c" stoichiometry="1"/> <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDCPDPpp" metaid="edf59a77-9d26-46f1-ab8e-1da894ac3f51" name="undecaprenyl_diphosphatase__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_017720</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 3.6.1.27</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#edf59a77-9d26-46f1-ab8e-1da894ac3f51"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.27"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017720"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_udcpdp_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> <speciesReference constant="true" species="M_udcpp_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MTRI" metaid="_6fb97570-f876-42d0-87aa-3dd19fb12fc0" name="R_MTRI" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_012050</p> <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> <p>EC_NUMBER: 5.3.1.23</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6fb97570-f876-42d0-87aa-3dd19fb12fc0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.23"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012050"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_5mdr1p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_5mdru1p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Niabcpp" metaid="_6d7bcd38-06ed-4a02-83d8-9a04a3cdf12b" name="R_Niabcpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: 3.6.3.24</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6d7bcd38-06ed-4a02-83d8-9a04a3cdf12b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.24"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ni2_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ni2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDEP1pp" metaid="_2ee3178f-cd5c-46ed-957e-64b4d013309c" name="murein_L_D_endopeptidase__murein3px3p___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2ee3178f-cd5c-46ed-957e-64b4d013309c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_murein3px3p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_murein3p3p_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THDPS" metaid="_4c9752db-6ac6-41d6-ac69-c036ee50633f" name="tetrahydrodipicolinate_succinylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015100</p> <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> <p>EC_NUMBER: 2.3.1.117</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4c9752db-6ac6-41d6-ac69-c036ee50633f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.117"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015100"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_succoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thdp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_sl2a6o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR60" metaid="_161e1c42-26df-4803-9482-c44d8809627b" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C6_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.100</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_161e1c42-26df-4803-9482-c44d8809627b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3ohexACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3hhexACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KARA2" metaid="_7137640b-08fb-4d48-a493-848e538f96e4" name="ketol_acid_reductoisomerase__2_Acetolactate_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_017890</p> <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> <p>EC_NUMBER: 1.1.1.86</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7137640b-08fb-4d48-a493-848e538f96e4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.86"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_2ahbut_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_23dhmp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL60t2pp" metaid="_8114a03e-0693-4d24-b01b-0073a5bdf075" name="fatty_acid_CoA_ligase__hexanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.2.1.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8114a03e-0693-4d24-b01b-0073a5bdf075"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hxa_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hxcoa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_14GLUCANtex" metaid="_6fad67d1-09ba-4d18-95e0-5bf1cc1498b7" name="R_14GLUCANtex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6fad67d1-09ba-4d18-95e0-5bf1cc1498b7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_14aglucan_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_14aglucan_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD120" metaid="_76125732-dfb4-4bed-a454-8c2ed827159b" name="Phosphatidylserine_decarboxylase__n_C12_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 4.1.1.65</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_76125732-dfb4-4bed-a454-8c2ed827159b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ps120_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pe120_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CD2t3pp" metaid="_6a6be6f5-942a-4c62-acf5-19dfca4f0912" name="cadmium__Cd_2__transport_out_via_proton_antiport__periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010570</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6a6be6f5-942a-4c62-acf5-19dfca4f0912"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010570"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cd2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cd2_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TRPTRS" metaid="_40319eaf-9e30-43a6-8522-e4712915748d" name="Tryptophanyl_tRNA_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007540</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 6.1.1.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_40319eaf-9e30-43a6-8522-e4712915748d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007540"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_trnatrp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trp_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trptrna_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INSTtex" metaid="cdc4a2be-7fbd-47c8-bbc2-eee17a32869f" name="inositol_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#cdc4a2be-7fbd-47c8-bbc2-eee17a32869f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_inost_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_inost_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPT" metaid="ac1bd227-b716-4bab-8df7-0a75519b747f" name="R_ASPT" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002100</p> <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> <p>EC_NUMBER: 4.3.1.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ac1bd227-b716-4bab-8df7-0a75519b747f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.1.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002100"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SERTRS" metaid="f804cee3-3765-4d25-9e4a-ea4f4f6cadb3" name="Seryl_tRNA_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020870</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 6.1.1.11</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f804cee3-3765-4d25-9e4a-ea4f4f6cadb3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.11"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020870"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trnaser_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_sertrna_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGCDr" metaid="e85307f9-e4f6-4d24-9b95-facdb10b26c3" name="phosphoglycerate_dehydrogenase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020190</p> <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> <p>EC_NUMBER: 1.1.1.95</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e85307f9-e4f6-4d24-9b95-facdb10b26c3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.95"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020190"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3pg_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3php_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NOVBCNtpp" metaid="_5ca19ded-359b-4743-946b-f3d0123a11cc" name="Novobiocin_transport_via_TolC_system" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5ca19ded-359b-4743-946b-f3d0123a11cc"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> <speciesReference constant="true" species="M_novbcn_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_novbcn_e" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROTRS" metaid="_38f0455e-f7aa-40da-b02b-4a5a0eef5801" name="Prolyl_tRNA_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007370</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 6.1.1.15</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_38f0455e-f7aa-40da-b02b-4a5a0eef5801"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.15"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007370"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_trnapro_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_protrna_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DUTPDP" metaid="_33f29952-a3e2-4221-b99e-dd06006a5693" name="dUTP_diphosphatase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015440</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.6.1.23</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_33f29952-a3e2-4221-b99e-dd06006a5693"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.23"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015440"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dutp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dump_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDRPDr" metaid="_3db595ad-5b6f-402f-b8aa-1e235cb8fd82" name="R_MDRPDr" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020230</p> <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> <p>EC_NUMBER: 4.2.1.109</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3db595ad-5b6f-402f-b8aa-1e235cb8fd82"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.109"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020230"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_5mdru1p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dkmpp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD40" metaid="_37eaf0db-57f8-422f-922e-522d13770c11" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C4_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 4.2.1.59</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_37eaf0db-57f8-422f-922e-522d13770c11"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3haACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_but2eACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADSK" metaid="_85d5b406-f57f-4a73-a44b-6d017b59b2cf" name="adenylyl_sulfate_kinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002680</p> <p>SUBSYSTEM: Cysteine_Metabolism</p> <p>EC_NUMBER: 2.7.1.25</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_85d5b406-f57f-4a73-a44b-6d017b59b2cf"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.25"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002680"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_aps_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_paps_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS120pp" metaid="ffa558f1-d74d-4319-8b63-06f62ee79683" name="cardiolipin_synthase__periplasmic__n_C12_0_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ffa558f1-d74d-4319-8b63-06f62ee79683"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pg120_p" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> <speciesReference constant="true" species="M_clpn120_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MCTP2App" metaid="dd16bec1-cf8a-4c14-bab2-2885cf18c2f2" name="murein_crosslinking_transpeptidase_1A__A2pm__D_ala___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004370 ) OR ( XFCFBP8418_008630 ) OR ( XFCFBP8418_010420 ) OR ( XFCFBP8418_011310 )</p> <p>SUBSYSTEM: Murein_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#dd16bec1-cf8a-4c14-bab2-2885cf18c2f2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008630"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010420"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004370"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011310"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_murein5p5p5p_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ala_D_p" stoichiometry="2"/> <speciesReference constant="true" species="M_murein5px4px4p_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NOtex" metaid="_126d4486-6fa6-4692-86ce-1a5e2e9b50cb" name="nitric_oxide_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_126d4486-6fa6-4692-86ce-1a5e2e9b50cb"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_no_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_no_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Mntex" metaid="_9278d2b5-4c10-4130-b169-9dbfd6a40161" name="R_Mntex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9278d2b5-4c10-4130-b169-9dbfd6a40161"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_mn2_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_mn2_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADSS" metaid="df3e285e-9030-481d-8b06-a7ffb62ea79f" name="adenylosuccinate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007280</p> <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> <p>EC_NUMBER: 6.3.4.4</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#df3e285e-9030-481d-8b06-a7ffb62ea79f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.4"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007280"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dcamp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPt2_2pp" metaid="_0cc2f9de-5d1d-4e44-ad6b-89dda6af0c75" name="R_ASPt2_2pp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025480</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0cc2f9de-5d1d-4e44-ad6b-89dda6af0c75"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025480"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> <speciesReference constant="true" species="M_asp_L_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALATA_L" metaid="f85ea233-7154-4528-9ab6-5937dd7ca44a" name="L_alanine_transaminase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004540</p> <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> <p>EC_NUMBER: 2.6.1.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f85ea233-7154-4528-9ab6-5937dd7ca44a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004540"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DADK" metaid="_235f4e1e-11ac-4a32-a0a9-c87385ecabab" name="deoxyadenylate_kinase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026070</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.7.4.11</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_235f4e1e-11ac-4a32-a0a9-c87385ecabab"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.11"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_damp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dadp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SOTA" metaid="b07c5ae3-e117-4a7c-814f-c83d7c3e8d21" name="R_SOTA" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003360</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 2.6.1.81</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b07c5ae3-e117-4a7c-814f-c83d7c3e8d21"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.81"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003360"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_sucorn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_sucgsa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOHMT" metaid="_30aa2606-8808-4ee6-b4d3-e1953050bd8d" name="3_methyl_2_oxobutanoate_hydroxymethyltransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026560</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.1.2.11</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_30aa2606-8808-4ee6-b4d3-e1953050bd8d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.11"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026560"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3mob_c" stoichiometry="1"/> <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_2dhp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ABUTtex" metaid="_19670ffc-772f-4621-82ba-26b98dad7052" name="4_aminobutyrate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_19670ffc-772f-4621-82ba-26b98dad7052"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_4abut_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_4abut_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGDC_r" metaid="eec6cf3f-516d-4536-ad2a-73e98b8c0ef7" name="R_AGDC_r" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003030</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 3.5.1.25</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#eec6cf3f-516d-4536-ad2a-73e98b8c0ef7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.25"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003030"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acgam6p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gam6p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DDCAtex" metaid="a4794958-bba0-4dc7-a430-957e7a1309f8" name="Fatty_acid__dodecanoate__transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a4794958-bba0-4dc7-a430-957e7a1309f8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ddca_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ddca_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAGAATXF" metaid="_92feb24f-ded7-468f-8410-4bc2fc8122be" name="R_UAGAATXF" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024900</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.3.1.129</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_92feb24f-ded7-468f-8410-4bc2fc8122be"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.129"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024900"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_uacgam_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3hdecACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_u3aga_XF_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYALDtex" metaid="baa6d16a-533f-48ab-bb79-4bf53824fedf" name="R_GLYALDtex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#baa6d16a-533f-48ab-bb79-4bf53824fedf"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glyald_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glyald_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTP10" metaid="_251cd69f-59b0-4bbf-b9f8-66c81ff22528" name="R_NTP10" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006890</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.6.1.15</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_251cd69f-59b0-4bbf-b9f8-66c81ff22528"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.15"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_itp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_idp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RPI" metaid="_84ca884c-785c-4589-85e2-e29eef61eec5" name="ribose_5_phosphate_isomerase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_001410</p> <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> <p>EC_NUMBER: 5.3.1.6</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_84ca884c-785c-4589-85e2-e29eef61eec5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.6"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001410"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ru5p_D_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PCabcpp" metaid="d99d80ac-fea2-4614-8aaa-d22c5dd79db6" name="sn_glycerol_3_phosphocholine_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d99d80ac-fea2-4614-8aaa-d22c5dd79db6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_g3pc_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_g3pc_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DSBDR" metaid="_442b5b18-fb55-4449-85d6-4a8667c22950" name="DsbD_reductase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_006350 ) OR ( XFCFBP8418_006350 AND XFCFBP8418_013260 )</p> <p>SUBSYSTEM: Electron_transfer</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_442b5b18-fb55-4449-85d6-4a8667c22950"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006350"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006350"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> </fbc:and> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dsbdox_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dsbdrd_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_VALabcpp" metaid="_4d8072c0-c917-4e4e-a984-3634d31f3449" name="L_valine_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4d8072c0-c917-4e4e-a984-3634d31f3449"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_val_L_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_val_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RPE" metaid="ff31b7d8-2c37-4322-b512-edbde18d8a5e" name="ribulose_5_phosphate_3_epimerase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026760</p> <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> <p>EC_NUMBER: 5.1.3.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ff31b7d8-2c37-4322-b512-edbde18d8a5e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.3.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026760"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ru5p_D_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_xu5p_D_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ANS" metaid="_32366fd1-5082-48d5-9646-3b28a7410c5b" name="anthranilate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_000460 AND XFCFBP8418_026730</p> <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> <p>EC_NUMBER: 4.1.3.27</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_32366fd1-5082-48d5-9646-3b28a7410c5b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.3.27"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000460"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026730"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_chor_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_anth_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RBP4E" metaid="_5779744d-e37e-46e1-9e95-8626d440d7cd" name="R_RBP4E" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5779744d-e37e-46e1-9e95-8626d440d7cd"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ru5p_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_xu5p_D_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASNS1" metaid="_7696c780-6ae3-4c99-bea7-10c42051dcf3" name="asparagine_synthase__glutamine_hydrolysing_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015130</p> <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> <p>EC_NUMBER: 6.3.5.4</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7696c780-6ae3-4c99-bea7-10c42051dcf3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.5.4"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015130"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_asn_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METAT" metaid="_1a1c7d09-cd76-4de7-9a5d-34f2985e9750" name="methionine_adenosyltransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007840</p> <p>SUBSYSTEM: Methionine_Metabolism</p> <p>EC_NUMBER: 2.5.1.6</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1a1c7d09-cd76-4de7-9a5d-34f2985e9750"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.6"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007840"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR80" metaid="_678394b3-e582-47f4-8c48-c9f82945157a" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C8_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.100</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_678394b3-e582-47f4-8c48-c9f82945157a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3ooctACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3hoctACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOATXF" metaid="_799bdd79-bad4-4a86-bf82-e735bb863477" name="R_MOATXF" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015030</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.4.99.12</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_799bdd79-bad4-4a86-bf82-e735bb863477"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.99.12"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015030"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ckdo_c" stoichiometry="1"/> <speciesReference constant="true" species="M_lipidA_XF_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_kdolipid4_XF_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PCtex" metaid="_0ca2baad-8ff8-4b02-ba9a-e729b34adff4" name="glycero_3_phosphocholine_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0ca2baad-8ff8-4b02-ba9a-e729b34adff4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_g3pc_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_g3pc_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MINCYCtpp" metaid="_727f254d-6d71-41dc-bc05-174f23061000" name="Minocycline_transport_via_TolC_system" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_727f254d-6d71-41dc-bc05-174f23061000"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_mincyc_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_mincyc_e" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IPMDr" metaid="b277d274-82b8-4a71-93f9-cdcfa5c407cf" name="3_isopropylmalate_dehydrogenase_reversible" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021500</p> <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> <p>EC_NUMBER: 1.1.1.85</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b277d274-82b8-4a71-93f9-cdcfa5c407cf"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.85"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021500"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3c2hmp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3c4mop_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SBPA" metaid="_48b9cc5a-09a5-43de-b499-b30b85b199b8" name="R_SBPA" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011030</p> <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_48b9cc5a-09a5-43de-b499-b30b85b199b8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011030"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_s17bp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_e4p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FBP" metaid="_95eaacc1-00ea-4f90-8f6f-8f850fed1a29" name="fructose_bisphosphatase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_95eaacc1-00ea-4f90-8f6f-8f850fed1a29"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_fdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AOXSr2" metaid="_9400c890-2a59-4627-8ad7-0b5bd92d25c9" name="8_amino_7_oxononanoate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004000</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.3.1.47</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9400c890-2a59-4627-8ad7-0b5bd92d25c9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.47"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004000"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pimACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_8aonn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ORNtex" metaid="_30d623cd-3157-42a3-857b-b4161c1f0c44" name="ornithine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007710</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_30d623cd-3157-42a3-857b-b4161c1f0c44"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_orn_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_orn_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PIuabcpp" metaid="_7758ea08-9ec7-40bd-80df-08c4841b230d" name="phosphate_transport_via_ABC_system__uptake__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_019420 AND XFCFBP8418_019430 AND XFCFBP8418_019440 AND XFCFBP8418_019450</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7758ea08-9ec7-40bd-80df-08c4841b230d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019420"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019430"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019440"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019450"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="2"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HSTPTr" metaid="_9e184f17-f727-4bc1-b67b-703973f1bb91" name="histidinol_phosphate_transaminase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020310</p> <p>SUBSYSTEM: Histidine_Metabolism</p> <p>EC_NUMBER: 2.6.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9e184f17-f727-4bc1-b67b-703973f1bb91"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020310"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_imacp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_hisp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SERTRS2" metaid="d1db8a88-2e24-4a99-bfa5-e80896799f4d" name="Seryl_tRNA_synthetase__selenocystein_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020870</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 6.1.1.11</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d1db8a88-2e24-4a99-bfa5-e80896799f4d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.11"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020870"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trnasecys_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_sertrna_sec_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_O2tex" metaid="c3700227-200a-4301-b3ac-fe1269c357f5" name="oxygen_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c3700227-200a-4301-b3ac-fe1269c357f5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_o2_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_o2_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUTRS" metaid="b8637038-f275-43b8-aa77-1e32c48fd80a" name="Glutamyl_tRNA_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011070</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 6.1.1.17</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b8637038-f275-43b8-aa77-1e32c48fd80a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.17"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011070"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trnaglu_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glutrna_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUTRR" metaid="_6633a907-f3e1-4193-98fb-693bd2edb998" name="glutamyl_tRNA_reductase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_012920</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 1.2.1.70</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6633a907-f3e1-4193-98fb-693bd2edb998"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.70"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012920"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glutrna_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glu1sa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trnaglu_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FADRx2" metaid="_1a31ffcd-1cd7-4991-ac9c-75f24efdafd8" name="R_FADRx2" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002700 AND XFCFBP8418_002710</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.5.1.30</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1a31ffcd-1cd7-4991-ac9c-75f24efdafd8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.30"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002710"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002700"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AKGt2rpp" metaid="_56babd7d-178d-4e30-bbe7-37be8f99c75c" name="2_oxoglutarate_reversible_transport_via_symport__periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_014890</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_56babd7d-178d-4e30-bbe7-37be8f99c75c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_akg_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDCP4pp" metaid="_4f680622-675b-4d0b-befc-1ac754cc150a" name="murein_D_D_carboxypeptidase__murein5p4p___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_018620 ) OR ( XFCFBP8418_020420 )</p> <p>SUBSYSTEM: Murein_Biosynthesis</p> <p>EC_NUMBER: 3.4.16.4</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4f680622-675b-4d0b-befc-1ac754cc150a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.16.4"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020420"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_murein5p4p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_murein4p4p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_GCALD" metaid="c82549a2-429a-4622-b277-a2d927e5780d" name="R_DM_GCALD" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c82549a2-429a-4622-b277-a2d927e5780d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gcald_c" stoichiometry="1"/> </listOfReactants> <listOfProducts/> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OCDCEAtexi" metaid="_308a73d2-096d-4b14-be3e-96175ac517ba" name="R_OCDCEAtexi" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_308a73d2-096d-4b14-be3e-96175ac517ba"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ocdcea_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ocdcea_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CMtpp" metaid="a13b6201-035d-4799-b18e-bf3f1fa52249" name="Chloramphenicol_transport_via_TolC_system" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a13b6201-035d-4799-b18e-bf3f1fa52249"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> <speciesReference constant="true" species="M_cm_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cm_e" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PMEACPE" metaid="_68a9ebb6-f1c6-44c4-a5c8-7dcee09ae7ba" name="Pimeloyl__ACP__methyl_ester_esterase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004010</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 3.1.1.85</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_68a9ebb6-f1c6-44c4-a5c8-7dcee09ae7ba"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.1.85"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004010"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pmeACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_meoh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pimACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADK1" metaid="_49cdf00d-bed3-479b-b154-c0f5fb59388e" name="adenylate_kinase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026070</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.7.4.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_49cdf00d-bed3-479b-b154-c0f5fb59388e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_adp_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP140pp" metaid="_7a8ec943-7c19-4990-a3f3-03e43ff54b22" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C14_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 3.1.3.27</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7a8ec943-7c19-4990-a3f3-03e43ff54b22"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pgp140_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> <speciesReference constant="true" species="M_pg140_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GRTT" metaid="_9978b685-ed01-4b71-bb18-16a6d0e1db8b" name="geranyltranstransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005980</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.5.1.10</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9978b685-ed01-4b71-bb18-16a6d0e1db8b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.10"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005980"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ipdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_grdp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_frdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUCtex" metaid="_6083e642-12b7-4961-a2ab-988dc5346324" name="R_FUCtex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6083e642-12b7-4961-a2ab-988dc5346324"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_fuc_L_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_fuc_L_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM3PH" metaid="_5bcf5dcc-ce35-4973-8e5d-a3acbefbccb7" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tripeptide_beta__1_4_N_acetylglucosaminidase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021350</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5bcf5dcc-ce35-4973-8e5d-a3acbefbccb7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021350"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_anhgm3p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_anhm3p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acgam_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYOX" metaid="baa53e94-4e56-4a8a-800d-80dc093d5834" name="hydroxyacylglutathione_hydrolase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_019610</p> <p>SUBSYSTEM: Methylglyoxal_degradation</p> <p>EC_NUMBER: 3.1.2.6</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#baa53e94-4e56-4a8a-800d-80dc093d5834"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.6"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019610"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_lgt_S_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gthrd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_lac_D_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FBA" metaid="d57285eb-dacd-4631-8872-dbaec147930d" name="fructose_bisphosphate_aldolase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011030</p> <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> <p>EC_NUMBER: 4.1.2.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d57285eb-dacd-4631-8872-dbaec147930d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011030"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_fdp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DOXRBCNtpp" metaid="b12b499f-3972-4815-a88a-a9317ef5d311" name="Doxorubicin_transport_via_TolC_system" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b12b499f-3972-4815-a88a-a9317ef5d311"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> <speciesReference constant="true" species="M_doxrbcn_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_doxrbcn_e" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AP4AS" metaid="e2a33de6-8ba2-4520-9b91-68d823beb82f" name="R_AP4AS" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023900</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e2a33de6-8ba2-4520-9b91-68d823beb82f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023900"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="2"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ap4a_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADK3" metaid="_3c33c4b5-38c9-4e55-a928-726c79ddb1d2" name="adentylate_kinase__GTP_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026070</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.7.4.4</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3c33c4b5-38c9-4e55-a928-726c79ddb1d2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.4"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACOATA" metaid="d134947b-2d61-43dc-ad87-3586854783f4" name="Acetyl_CoA_ACP_transacylase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_017940</p> <p>SUBSYSTEM: Membrane_Lipid_Metabolism</p> <p>EC_NUMBER: 2.3.1.38</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d134947b-2d61-43dc-ad87-3586854783f4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.38"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017940"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADK4" metaid="d80fc4ec-a1a3-48fc-b5d9-663765d5ee43" name="adentylate_kinase__ITP_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026070</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d80fc4ec-a1a3-48fc-b5d9-663765d5ee43"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_itp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_idp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_APRAUR" metaid="_70c48d46-da92-46e2-baa8-b8192e76e959" name="5_amino_6__5_phosphoribosylamino_uracil_reductase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_009790</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.193</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_70c48d46-da92-46e2-baa8-b8192e76e959"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.193"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009790"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_5apru_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_5aprbu_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S2FE2ST" metaid="d88fa6b4-43b9-414c-84e2-b3f14db7a4c3" name="R_S2FE2ST" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950 AND XFCFBP8418_012150</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d88fa6b4-43b9-414c-84e2-b3f14db7a4c3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012150"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="4"/> <speciesReference constant="true" species="M_sufbcd_2fe2s_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_2fe2s_c" stoichiometry="1"/> <speciesReference constant="true" species="M_sufbcd_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LPADSSXF" metaid="c6e32931-814b-41c7-a454-7f0a8ecffa84" name="R_LPADSSXF" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024910</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.4.1.182</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c6e32931-814b-41c7-a454-7f0a8ecffa84"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.1.182"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_u23ga_XF_c" stoichiometry="1"/> <speciesReference constant="true" species="M_lipidX_XF_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_lipidAds_XF_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GDPDPK" metaid="d6fbd975-bf2e-4c02-a28a-48d1ab9741ae" name="GDP_diphosphokinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004340 ) OR ( XFCFBP8418_008750 )</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.7.6.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d6fbd975-bf2e-4c02-a28a-48d1ab9741ae"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.6.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008750"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppgpp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AICART" metaid="_743b940c-dc47-4773-af74-6f8f53223744" name="phosphoribosylaminoimidazolecarboxamide_formyltransferase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_001030</p> <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> <p>EC_NUMBER: 2.1.2.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_743b940c-dc47-4773-af74-6f8f53223744"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001030"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_aicar_c" stoichiometry="1"/> <speciesReference constant="true" species="M_10fthf_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_fprica_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S2FE2SS" metaid="df79ddf3-b54a-400f-9ed3-c4a7a1293421" name="R_S2FE2SS" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950 AND XFCFBP8418_002960 AND XFCFBP8418_025330</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#df79ddf3-b54a-400f-9ed3-c4a7a1293421"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025330"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_sufbcd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_sufsesh_c" stoichiometry="2"/> <speciesReference constant="true" species="M_fe2_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="7"/> <speciesReference constant="true" species="M_sufse_c" stoichiometry="2"/> <speciesReference constant="true" species="M_sufbcd_2fe2s_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S2FE2SR" metaid="ad865030-3d0f-46b0-ae92-d51f2fe675ea" name="R_S2FE2SR" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950 AND XFCFBP8418_002960 AND XFCFBP8418_025330</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ad865030-3d0f-46b0-ae92-d51f2fe675ea"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025330"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_sufbcd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_sufsesh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2fe1s_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="5"/> <speciesReference constant="true" species="M_sufse_c" stoichiometry="1"/> <speciesReference constant="true" species="M_sufbcd_2fe2s_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MECDPDH5" metaid="_3dcaee8e-0581-4fd2-a58e-36c336cea301" name="R_MECDPDH5" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_012250 AND XFCFBP8418_023100</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.17.7.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3dcaee8e-0581-4fd2-a58e-36c336cea301"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.7.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012250"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023100"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_2mecdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_flxr_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2mb4p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_flxso_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPNDH" metaid="_4504abff-43dd-4a5c-8d7d-c99bfd5232d8" name="prephenate_dehydratase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021090</p> <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> <p>EC_NUMBER: 4.2.1.51</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4504abff-43dd-4a5c-8d7d-c99bfd5232d8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.51"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021090"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pphn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_phpyr_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_COBALT2t3pp" metaid="_413f9a7c-17cb-4b24-a54b-9139a7907c2c" name="cobalt__Co_2__transport_out_via_proton_antiport__periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010570</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_413f9a7c-17cb-4b24-a54b-9139a7907c2c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010570"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cobalt2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cobalt2_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MPTG2" metaid="ea8026d5-3079-404e-ae94-de7266c66bb9" name="murein_polymerizing_transglycosylase_2__three_linked_units_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004700 AND XFCFBP8418_008630 ) OR ( XFCFBP8418_004700 AND XFCFBP8418_010420 ) OR ( XFCFBP8418_004700 AND XFCFBP8418_020460 )</p> <p>SUBSYSTEM: Murein_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ea8026d5-3079-404e-ae94-de7266c66bb9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020460"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008630"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010420"/> </fbc:and> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_uaagmda_c" stoichiometry="1"/> <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_udcpdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_murein5p5p5p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GAPD" metaid="b831af11-11e9-46cd-a767-98d8e6ae317b" name="glyceraldehyde_3_phosphate_dehydrogenase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007260</p> <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> <p>EC_NUMBER: 1.2.1.12</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b831af11-11e9-46cd-a767-98d8e6ae317b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.12"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007260"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_13dpg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PYK" metaid="_043c5f9c-0c78-4d01-b3a3-8e821cd2855f" name="pyruvate_kinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011050</p> <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> <p>EC_NUMBER: 2.7.1.40</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_043c5f9c-0c78-4d01-b3a3-8e821cd2855f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.40"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011050"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_QUIN2tex" metaid="_31c3858e-2a09-490c-83ca-e7646693cc58" name="R_QUIN2tex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_31c3858e-2a09-490c-83ca-e7646693cc58"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_quin_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_quin_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHTBSptspp" metaid="a7cd7347-243a-4ea4-86c6-cc55b9b7ce10" name="R_CHTBSptspp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003580</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a7cd7347-243a-4ea4-86c6-cc55b9b7ce10"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_chtbs_p" stoichiometry="1"/> <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_chtbs6p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPPGO" metaid="_3a1ca359-53dd-4137-a384-4c4aed4c2efb" name="protoporphyrinogen_oxidase__aerobic_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.3.3.4</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3a1ca359-53dd-4137-a384-4c4aed4c2efb"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.3.4"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_o2_c" stoichiometry="1.5"/> <speciesReference constant="true" species="M_pppg9_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppp9_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="3"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSP_L" metaid="_486e5a3f-1611-4213-a1af-da0364cd412c" name="phosphoserine_phosphatase__L_serine_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Methionine_Metabolism</p> <p>EC_NUMBER: 3.1.3.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_486e5a3f-1611-4213-a1af-da0364cd412c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pser_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG140abcpp" metaid="d569cf55-f1ce-4fac-a614-263236ad327b" name="phosphatidylglycerol_transport_via_ABC_system__n_C14_0__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d569cf55-f1ce-4fac-a614-263236ad327b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pg140_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pg140_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BHEXAMD_p" metaid="b1754b01-de38-4b32-909c-2c8a0bf2f851" name="R_BHEXAMD_p" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b1754b01-de38-4b32-909c-2c8a0bf2f851"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_chtbs_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_acgam_p" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IG3PS" metaid="_8316c47c-13b2-4967-96d9-149ef52f5e2b" name="Imidazole_glycerol_3_phosphate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020270 AND XFCFBP8418_020290</p> <p>SUBSYSTEM: Histidine_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8316c47c-13b2-4967-96d9-149ef52f5e2b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020290"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020270"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_prlp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_aicar_c" stoichiometry="1"/> <speciesReference constant="true" species="M_eig3p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ZN2t3pp" metaid="_89074f04-5c71-4b22-87a4-e9cc5b218486" name="zinc__Zn_2__transport_out_via_proton_antiport__periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010570</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_89074f04-5c71-4b22-87a4-e9cc5b218486"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010570"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_zn2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_zn2_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MCTP1Bpp" metaid="_43d8c899-b964-402b-8cc3-5b322c5cebdd" name="murein_crosslinking_transpeptidase_1B__A2pm__A2pm___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_008630 ) OR ( XFCFBP8418_010420 )</p> <p>SUBSYSTEM: Murein_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_43d8c899-b964-402b-8cc3-5b322c5cebdd"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008630"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010420"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_murein5px3p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_alaala_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG181abcpp" metaid="ae101868-39b2-4394-b08d-b200e2aeacda" name="phosphatidylglycerol_transport_via_ABC_system__n_C18_1__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ae101868-39b2-4394-b08d-b200e2aeacda"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pg181_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pg181_p" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHNPTE" metaid="_9c5a9fe1-95bb-4d1c-96ca-65e1bbf685c0" name="R_DHNPTE" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007450</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 5.1.99.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9c5a9fe1-95bb-4d1c-96ca-65e1bbf685c0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.99.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007450"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dhnpt_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dhmpt_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HYXNtpp" metaid="_4a5f98fb-3bd4-4023-8a75-76dcf7743a8e" name="R_HYXNtpp" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4a5f98fb-3bd4-4023-8a75-76dcf7743a8e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_hxan_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_hxan_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_E4P" metaid="_16143a2a-81df-4625-8e0d-024f7c1d9265" name="R_DM_E4P" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_16143a2a-81df-4625-8e0d-024f7c1d9265"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_e4p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts/> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ILEtex" metaid="_7fb97607-e83e-4f04-a22b-61d665599138" name="L_isoleucine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7fb97607-e83e-4f04-a22b-61d665599138"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ile_L_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ile_L_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYTK1" metaid="b35cfab3-f230-41ae-ba8f-262dcad25287" name="cytidylate_kinase__CMP_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004870</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.7.4.14</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b35cfab3-f230-41ae-ba8f-262dcad25287"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.14"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004870"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cdp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOX2abcpp" metaid="_62738479-cf85-4018-aec9-41eed2607914" name="R_METSOX2abcpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_62738479-cf85-4018-aec9-41eed2607914"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_metsox_R_L_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_metsox_R_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TRPS2" metaid="d4ee51b8-8b6e-4e04-a97f-5f9d65da4c9a" name="R_TRPS2" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003820 AND XFCFBP8418_003830</p> <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> <p>EC_NUMBER: 4.2.1.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d4ee51b8-8b6e-4e04-a97f-5f9d65da4c9a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003830"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003820"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_indole_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trp_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DCTPD" metaid="_27d1f9b3-342a-4707-8c9e-b20105bc33ac" name="dCTP_deaminase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011560</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.5.4.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_27d1f9b3-342a-4707-8c9e-b20105bc33ac"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011560"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dctp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dutp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL140t2pp" metaid="d0a9a803-5d82-4d2a-8f86-12aad13447e7" name="fatty_acid_CoA_ligase__tetradecanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.2.1.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d0a9a803-5d82-4d2a-8f86-12aad13447e7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ttdca_p" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_tdcoa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA181abcpp" metaid="_2882c2e6-f3ce-42a7-9e5b-a3a5b2a932ba" name="phosphatidate_transport_via_ABC_system__n_C18_1__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2882c2e6-f3ce-42a7-9e5b-a3a5b2a932ba"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pa181_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pa181_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYKr" metaid="_01d621a5-aaa8-4c78-95a3-bd1c60708a0a" name="glycerol_kinase__reversible_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020720</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 2.7.1.30</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_01d621a5-aaa8-4c78-95a3-bd1c60708a0a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.30"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020720"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glyc_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP120" metaid="_5f9dd26b-c6e9-445b-8eb1-8aec7dd5ab14" name="phosphatidylglycerol_phosphate_phosphatase__n_C14_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 3.1.3.27</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5f9dd26b-c6e9-445b-8eb1-8aec7dd5ab14"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pgp120_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pg120_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUt4pp" metaid="_719fa133-2460-4968-a297-4a346376a133" name="R_GLUt4pp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_000650</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_719fa133-2460-4968-a297-4a346376a133"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000650"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_na1_p" stoichiometry="1"/> <speciesReference constant="true" species="M_glu_L_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_na1_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GUAtpp" metaid="b9b2cd98-3901-4d60-8afc-ebd4c46d93cd" name="R_GUAtpp" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b9b2cd98-3901-4d60-8afc-ebd4c46d93cd"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gua_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gua_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NODOy" metaid="bea88a6d-157a-4674-a63a-db6fec619225" name="nitric_oxide_dioxygenase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_014590</p> <p>SUBSYSTEM: Nitrogen_Metabolism</p> <p>EC_NUMBER: 1.14.12.17</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#bea88a6d-157a-4674-a63a-db6fec619225"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.14.12.17"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014590"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_o2_c" stoichiometry="2"/> <speciesReference constant="true" species="M_no_c" stoichiometry="2"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_no3_c" stoichiometry="2"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DTMPK" metaid="_0da9684f-202c-4ba5-b34c-5a0cf61f6192" name="dTMP_kinase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006690</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.7.4.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0da9684f-202c-4ba5-b34c-5a0cf61f6192"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006690"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dtmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dtdp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SUCOAS" metaid="ea388af7-db37-4569-8f66-ef10468d4987" name="succinyl_CoA_synthetase__ADP_forming_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011960 AND XFCFBP8418_011970</p> <p>SUBSYSTEM: Citric_Acid_Cycle</p> <p>EC_NUMBER: 6.2.1.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ea388af7-db37-4569-8f66-ef10468d4987"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011970"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011960"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_succoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYTK2" metaid="e66be1e9-3407-4b0b-ac83-de6a60fa30fe" name="cytidylate_kinase__dCMP_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004870</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.7.4.14</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e66be1e9-3407-4b0b-ac83-de6a60fa30fe"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.14"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004870"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dcmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dcdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PNTK" metaid="da5808be-1ffe-4b03-837f-0c48cf839c38" name="pantothenate_kinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_018190</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.7.1.33</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#da5808be-1ffe-4b03-837f-0c48cf839c38"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.33"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018190"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pnto_R_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_4ppan_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PAPPT3" metaid="c1fdd5ff-6f8e-4c9e-a65a-87170bae8b65" name="phospho_N_acetylmuramoyl_pentapeptide_transferase__meso_2_6_diaminopimelate_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011280</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.7.8.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c1fdd5ff-6f8e-4c9e-a65a-87170bae8b65"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011280"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_udcpp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ugmda_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_uagmda_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HEPT1" metaid="_121569c1-aca4-4a43-a54e-7ab8a6ad28d1" name="R_HEPT1" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_019540</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_121569c1-aca4-4a43-a54e-7ab8a6ad28d1"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019540"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_adphep_LD_c" stoichiometry="1"/> <speciesReference constant="true" species="M_lipidA_XF_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hlipidA_XF_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR161tipp" metaid="abe99089-4242-4fb7-92aa-8e1384b39616" name="R_12DGR161tipp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#abe99089-4242-4fb7-92aa-8e1384b39616"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_12dgr161_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_12dgr161_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NNAMr" metaid="_45edd948-9a91-4a3d-ae9c-7d5a9ef1047b" name="nicotinamidase__reversible" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020780</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 3.5.1.19</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_45edd948-9a91-4a3d-ae9c-7d5a9ef1047b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.19"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020780"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ncam_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nac_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PD5" metaid="e0007e94-29e4-4615-90ae-66b2a8ea76f4" name="glycerol_3_phosphate_dehydrogenase__ubiquinone_8_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020700</p> <p>SUBSYSTEM: Glycerol_Degradation</p> <p>EC_NUMBER: 1.1.5.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e0007e94-29e4-4615-90ae-66b2a8ea76f4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.5.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020700"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTPCI" metaid="_8228c5ad-649a-49e1-be1f-4c1f6da9d41b" name="GTP_cyclohydrolase_I" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_001100</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 3.5.4.16</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8228c5ad-649a-49e1-be1f-4c1f6da9d41b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.16"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001100"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ahdt_c" stoichiometry="1"/> <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HEPT3" metaid="_61f4e47d-1ec6-4b63-8e55-8290a85c1049" name="R_HEPT3" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_019540</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_61f4e47d-1ec6-4b63-8e55-8290a85c1049"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019540"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_adphep_LD_c" stoichiometry="1"/> <speciesReference constant="true" species="M_phhlipidA_XF_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hphhlipidA_XF_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PD2" metaid="f56c2f7a-1537-4b9c-bbf8-8645b86821d8" name="glycerol_3_phosphate_dehydrogenase__NADP_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_018110</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 1.1.1.94</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f56c2f7a-1537-4b9c-bbf8-8645b86821d8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.94"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018110"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NACtex" metaid="_5f683c5e-d94b-4fef-839b-3363659b8be3" name="Nicotinic_acid_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5f683c5e-d94b-4fef-839b-3363659b8be3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nac_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nac_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_P5CG" metaid="_01ee6104-d3d1-4fbc-ba9e-8651bff7eb2f" name="R_P5CG" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Glutamate_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_01ee6104-d3d1-4fbc-ba9e-8651bff7eb2f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glu5sa_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_1pyr5c_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CDGS" metaid="_297a559f-86bd-4d65-9a6d-81df9ee5d9ea" name="7_deaza_7_carboxyguanine_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_016450</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 4.3.99.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_297a559f-86bd-4d65-9a6d-81df9ee5d9ea"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.99.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016450"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cph4_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cdg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_P5CD" metaid="bf8bce5c-5964-426a-8ddd-934248037087" name="1_pyrroline_5_carboxylate_dehydrogenase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 1.5.1.12</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#bf8bce5c-5964-426a-8ddd-934248037087"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.12"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_1pyr5c_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CDGR" metaid="b12453cd-1703-4b8e-8a28-dd0d81dc44ad" name="7_cyano_7_deazaguanine_reductase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021550</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.7.1.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b12453cd-1703-4b8e-8a28-dd0d81dc44ad"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.7.1.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021550"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="2"/> <speciesReference constant="true" species="M_preq0_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="2"/> <speciesReference constant="true" species="M_preq1_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DGK1" metaid="_9f81734d-b4bd-41d4-8ddf-79e9695a25a9" name="deoxyguanylate_kinase__dGMP_ATP_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002650</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.7.4.12</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9f81734d-b4bd-41d4-8ddf-79e9695a25a9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.12"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002650"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dgmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dgdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT120" metaid="_8fbb9223-3e34-4dca-b9f7-5d7ab75b20e5" name="R_G3PAT120" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.3.1.15</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8fbb9223-3e34-4dca-b9f7-5d7ab75b20e5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ddcaACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_1ddecg3p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PHETRS" metaid="d7ced00b-f100-410f-aaeb-4d131894d762" name="Phenylalanyl_tRNA_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011750 AND XFCFBP8418_011760</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 6.1.1.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d7ced00b-f100-410f-aaeb-4d131894d762"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011750"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011760"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_phe_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trnaphe_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_phetrna_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGLYCP" metaid="b7c0d0ef-b131-43f4-8db4-e4314519c5a0" name="Phosphoglycolate_phosphatase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005170</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 3.1.3.18</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b7c0d0ef-b131-43f4-8db4-e4314519c5a0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.18"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005170"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2pglyc_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glyclt_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGtex" metaid="c0a2be14-66bf-4a69-91bb-52745a063137" name="L_arginine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c0a2be14-66bf-4a69-91bb-52745a063137"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_arg_L_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_arg_L_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAMAS" metaid="_6ebf5651-80a6-4232-ac63-3082145b32ca" name="UDP_N_acetylmuramoyl_L_alanine_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011250</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.3.2.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6ebf5651-80a6-4232-ac63-3082145b32ca"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011250"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_uamr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_uama_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADNUC" metaid="_36c795ab-3c17-4599-a6b7-1b9a0fd6f7ec" name="adenosine_hydrolase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 3.2.2.7</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_36c795ab-3c17-4599-a6b7-1b9a0fd6f7ec"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.2.7"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ade_c" stoichiometry="1"/> <speciesReference constant="true" species="M_rib_D_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADNt2pp" metaid="c3206781-27f3-4c37-9dc2-c78669cf6757" name="R_ADNt2pp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c3206781-27f3-4c37-9dc2-c78669cf6757"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_adn_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NOtpp" metaid="_78e5aea7-2ac6-4a3c-830f-daf94491487e" name="NO_transport__diffusion_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_78e5aea7-2ac6-4a3c-830f-daf94491487e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_no_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_no_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XYLtex" metaid="fa6915be-2f49-4f71-8fcd-6aebad75ef47" name="R_XYLtex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#fa6915be-2f49-4f71-8fcd-6aebad75ef47"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_xyl_D_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_xyl_D_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_P5CR" metaid="_158dba30-14f5-401a-b1d8-12dcb1535288" name="pyrroline_5_carboxylate_reductase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_013370</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 1.5.1.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_158dba30-14f5-401a-b1d8-12dcb1535288"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013370"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_1pyr5c_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL120t2pp" metaid="_94eba020-6f77-43c1-9fe5-bb1bd7e6aad6" name="fatty_acid_CoA_ligase__dodecanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.2.1.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_94eba020-6f77-43c1-9fe5-bb1bd7e6aad6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> <speciesReference constant="true" species="M_ddca_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ddcacoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LYSTRS" metaid="_018c56f1-8d37-413b-bb73-e5f0af6dc277" name="Lysyl_tRNA_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023900</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 6.1.1.6</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_018c56f1-8d37-413b-bb73-e5f0af6dc277"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.6"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023900"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_lys_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trnalys_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_lystrna_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLTGY4pp" metaid="b2dfa850-588a-40c9-a419-56474c2e0f12" name="murein_lytic_transglycosylase__murein4px4p4p___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_003940 ) OR ( XFCFBP8418_019770 )</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b2dfa850-588a-40c9-a419-56474c2e0f12"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003940"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019770"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_murein4px4p4p_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_murein4px4p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDPGLCUR4EP" metaid="_272c6c48-7392-44f5-8b9d-7f29e040131e" name="R_UDPGLCUR4EP" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020820</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 5.1.3.6</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_272c6c48-7392-44f5-8b9d-7f29e040131e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.3.6"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020820"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_udpglcur_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_udpgalur_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PTPAT" metaid="f30e63e6-c461-4c82-be34-8bca956defa3" name="pantetheine_phosphate_adenylyltransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025440</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.7.7.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f30e63e6-c461-4c82-be34-8bca956defa3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025440"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pan4p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dpcoa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GRXR" metaid="a46ca013-5f71-401c-8638-1c1d74832e05" name="glutaredoxin_reductase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_012410</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.8.4.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a46ca013-5f71-401c-8638-1c1d74832e05"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.4.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012410"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gthrd_c" stoichiometry="2"/> <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gthox_c" stoichiometry="1"/> <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUDxi" metaid="bc91dd32-ffce-4384-a9af-332161bfeedb" name="R_GLUDxi" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_001660</p> <p>SUBSYSTEM: Glutamate_Metabolism</p> <p>EC_NUMBER: 1.4.1.4</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#bc91dd32-ffce-4384-a9af-332161bfeedb"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.4.1.4"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001660"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OCBT" metaid="_5964bf74-d6e5-4ce0-93d3-c13c6acea5bc" name="ornithine_carbamoyltransferase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025290</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 2.1.3.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5964bf74-d6e5-4ce0-93d3-c13c6acea5bc"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.3.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025290"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_orn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cbp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_citr_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MEPCT" metaid="_17165073-998e-4383-8135-c93aeb2917b9" name="2_C_methyl_D_erythritol_4_phosphate_cytidylyltransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_022200</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.7.7.6</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_17165073-998e-4383-8135-c93aeb2917b9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.6"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022200"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2me4p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_4c2me_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UM4PL" metaid="_53df3af8-acf6-4da2-bf15-451e744c9a05" name="UDP_N_acetylmuramate_L_alanyl_gamma_D_glutamyl_meso_diaminopimelate_D_alanine_ligase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026060</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: 6.3.2.45</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_53df3af8-acf6-4da2-bf15-451e744c9a05"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.45"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026060"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_uamr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_LalaDgluMdapDala_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_um4p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP141" metaid="_73fd0d3c-0584-4c1b-948f-a56883aee2d2" name="phosphatidylglycerol_phosphate_phosphatase__n_C14_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 3.1.3.27</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_73fd0d3c-0584-4c1b-948f-a56883aee2d2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pgp141_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pg141_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_o2_e" metaid="_646a44a4-5b92-488c-9b8e-b9fe9e3dfa92" name="R_EX_o2_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_646a44a4-5b92-488c-9b8e-b9fe9e3dfa92"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_o2_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADMDCr" metaid="_4822dbc6-d580-47d8-9c1c-9835a304b3e9" name="Adenosylmethionine_decarboxylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002270</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 4.1.1.50</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4822dbc6-d580-47d8-9c1c-9835a304b3e9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.50"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002270"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ametam_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP140" metaid="e4b730ae-8294-4c36-b8a6-d0a83b9a9a82" name="phosphatidylglycerol_phosphate_phosphatase__n_C14_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 3.1.3.27</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e4b730ae-8294-4c36-b8a6-d0a83b9a9a82"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pgp140_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pg140_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACCOACr" metaid="_9a723345-b105-440f-adb5-ccdf64f4e741" name="R_ACCOACr" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003020 AND XFCFBP8418_014550 AND XFCFBP8418_014560 AND XFCFBP8418_026800</p> <p>SUBSYSTEM: Membrane_Lipid_Metabolism</p> <p>EC_NUMBER: 6.4.1.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9a723345-b105-440f-adb5-ccdf64f4e741"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.4.1.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026800"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014560"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003020"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014550"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_hco3_c" stoichiometry="1"/> <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_malcoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ULA4NFT" metaid="_6b3c7323-6ecc-41de-ac76-774c1351a483" name="R_ULA4NFT" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006440</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.1.1.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6b3c7323-6ecc-41de-ac76-774c1351a483"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006440"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_10fthf_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udpLa4n_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udpLa4fn_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_URAtex" metaid="f361a2e8-85b7-41d8-9aeb-6581c6c97fdd" name="R_URAtex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f361a2e8-85b7-41d8-9aeb-6581c6c97fdd"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ura_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ura_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDEP2pp" metaid="_53a270fc-b2b1-44b6-850e-cd29a6c12160" name="murein_D_D_endopeptidase__murein3px4p___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_53a270fc-b2b1-44b6-850e-cd29a6c12160"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> <speciesReference constant="true" species="M_murein3px4p_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_murein4p3p_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRAIS" metaid="_8aceeb76-a43c-4b0b-80c2-3932021ab547" name="phosphoribosylaminoimidazole_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006650</p> <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> <p>EC_NUMBER: 6.3.3.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8aceeb76-a43c-4b0b-80c2-3932021ab547"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.3.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006650"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_fpram_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_air_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_cobalt2_e" metaid="_089057f2-9126-4ed3-9ed5-549b47a61c69" name="R_EX_cobalt2_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_089057f2-9126-4ed3-9ed5-549b47a61c69"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_cobalt2_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SULabcpp" metaid="eb51e90d-10c2-448b-96d2-005c175b90c1" name="sulfate_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004070 AND XFCFBP8418_004080 AND XFCFBP8418_004090 AND XFCFBP8418_004100</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#eb51e90d-10c2-448b-96d2-005c175b90c1"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004100"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004090"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004080"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_so4_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_so4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP160abcpp" metaid="_2bcff870-8734-42d6-a979-38b35526bbce" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C16_0__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2bcff870-8734-42d6-a979-38b35526bbce"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pgp160_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pgp160_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACALDtpp" metaid="_4c8dad63-4c56-4843-8e1b-dcd6a2151f97" name="R_ACALDtpp" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: Spontaneous</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4c8dad63-4c56-4843-8e1b-dcd6a2151f97"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_acald_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_acald_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSDtex" metaid="_17999d1d-0dac-4cb1-a5b1-b1cb4734d30e" name="R_CYSDtex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_17999d1d-0dac-4cb1-a5b1-b1cb4734d30e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cys_D_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cys_D_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DMQMT" metaid="f192174a-4e57-4847-bd91-879239e05dbe" name="3_Dimethylubiquinonol_3_methyltransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005180</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.1.1.64</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f192174a-4e57-4847-bd91-879239e05dbe"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.64"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005180"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2omhmbl_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ahcys_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SPMDabcpp" metaid="c5945588-1dab-4e2e-ac23-11a842cff4b9" name="spermidine_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: 3.6.3.31</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c5945588-1dab-4e2e-ac23-11a842cff4b9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.31"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_spmd_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_spmd_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPO5" metaid="c9b32a8b-ef71-4fc9-84f2-8f381ce673cc" name="L_aspartate_oxidase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_000550</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c9b32a8b-ef71-4fc9-84f2-8f381ce673cc"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000550"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> <speciesReference constant="true" species="M_iasp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAGCVT" metaid="d78d7c18-3e2f-4bb8-ae04-6dcad5b190d1" name="UDP_N_acetylglucosamine_1_carboxyvinyltransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003450</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.5.1.7</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d78d7c18-3e2f-4bb8-ae04-6dcad5b190d1"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.7"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003450"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_uacgam_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_uaccg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPO3" metaid="df514e5b-3ab3-485e-99b3-e3f85b6fb9d6" name="R_ASPO3" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_000550</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#df514e5b-3ab3-485e-99b3-e3f85b6fb9d6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000550"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_iasp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_h2o_e" metaid="_61cec249-2342-4783-8c02-2d66ef9bd2b7" name="R_EX_h2o_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_61cec249-2342-4783-8c02-2d66ef9bd2b7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_h2o_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MTHFR2" metaid="_152f1441-c730-4edb-8fe8-db9ebe5ffd36" name="5_10_methylenetetrahydrofolate_reductase__NADH_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023810</p> <p>SUBSYSTEM: Folate_Metabolism</p> <p>EC_NUMBER: 1.5.1.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_152f1441-c730-4edb-8fe8-db9ebe5ffd36"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023810"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_5mthf_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Actex" metaid="_79c4f963-40f3-4233-8ecd-eaab21f9a788" name="R_Actex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_79c4f963-40f3-4233-8ecd-eaab21f9a788"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_na1_e" stoichiometry="1"/> <speciesReference constant="true" species="M_ac_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ac_p" stoichiometry="1"/> <speciesReference constant="true" species="M_na1_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G1PACT" metaid="_253f3d72-ff88-4265-a00e-0c4e07886924" name="glucosamine_1_phosphate_N_acetyltransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023670</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.3.1.157</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_253f3d72-ff88-4265-a00e-0c4e07886924"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.157"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023670"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gam1p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acgam1p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2Stpp" metaid="_97e52e9f-73df-4d9e-92d4-050a7fbb8b07" name="R_H2Stpp" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: Spontaneous</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_97e52e9f-73df-4d9e-92d4-050a7fbb8b07"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2s_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2s_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS140pp" metaid="_84c0c025-1c66-4a5a-9f81-a073f398525c" name="cardiolipin_synthase__periplasmic__n_C14_0_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_84c0c025-1c66-4a5a-9f81-a073f398525c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pg140_p" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> <speciesReference constant="true" species="M_clpn140_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UHGADAXF" metaid="_39eef7af-9647-4237-b574-67b855d7791e" name="R_UHGADAXF" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011190</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 3.5.1.108</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_39eef7af-9647-4237-b574-67b855d7791e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.108"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011190"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_u3aga_XF_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> <speciesReference constant="true" species="M_u3hga_XF_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPO6" metaid="ecfae277-ee16-4d2b-8dda-a9810b0053c2" name="L_aspartate_oxidase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_000550</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ecfae277-ee16-4d2b-8dda-a9810b0053c2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000550"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_iasp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PANTS" metaid="_16d88e10-4b9d-4556-a796-6b1258ad22fa" name="pantothenate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026550</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 6.3.2.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_16d88e10-4b9d-4556-a796-6b1258ad22fa"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026550"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pant_R_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ala_B_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pnto_R_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_co2_e" metaid="_2711df0f-e364-4cea-8eee-b6f411cdfa9e" name="R_EX_co2_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2711df0f-e364-4cea-8eee-b6f411cdfa9e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_co2_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSP" metaid="_4641d575-ba0f-40e8-a26d-932fb2108f61" name="R_PSP" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> <p>EC_NUMBER: 3.1.3.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4641d575-ba0f-40e8-a26d-932fb2108f61"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pser_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD180" metaid="b94c0c09-7ccb-4593-b50a-9da601600d3c" name="Phosphatidylserine_decarboxylase__n_C18_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 4.1.1.65</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b94c0c09-7ccb-4593-b50a-9da601600d3c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ps180_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pe180_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM4PApp" metaid="_045cf426-4bf4-480a-b9dc-8320ce07417a" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tetrapeptide_amidase__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011590</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: 3.5.1.29</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_045cf426-4bf4-480a-b9dc-8320ce07417a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.29"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011590"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_anhgm_p" stoichiometry="1"/> <speciesReference constant="true" species="M_LalaDgluMdapDala_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD181" metaid="a5849849-8097-47e6-9bf0-a05c53ddde4b" name="Phosphatidylserine_decarboxylase__n_C18_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 4.1.1.65</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a5849849-8097-47e6-9bf0-a05c53ddde4b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ps181_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pe181_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NODOx" metaid="c3fb34ba-15f5-4a90-a6b6-2d5547d91e2b" name="nitric_oxide_dioxygenase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_014590</p> <p>SUBSYSTEM: Nitrogen_Metabolism</p> <p>EC_NUMBER: 1.14.12.17</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c3fb34ba-15f5-4a90-a6b6-2d5547d91e2b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.14.12.17"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014590"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_o2_c" stoichiometry="2"/> <speciesReference constant="true" species="M_no_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_no3_c" stoichiometry="2"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2tpp" metaid="fed4783d-7b15-4b74-88bc-2fbfb4de6b6f" name="R_H2tpp" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: Spontaneous</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#fed4783d-7b15-4b74-88bc-2fbfb4de6b6f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_nh4_e" metaid="_14ff9c79-46cc-4a9b-8e19-bec5265cf89e" name="R_EX_nh4_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_14ff9c79-46cc-4a9b-8e19-bec5265cf89e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_nh4_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR160tipp" metaid="_9ddb6a17-a564-4404-aa8d-38886cdd19b9" name="R_12DGR160tipp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9ddb6a17-a564-4404-aa8d-38886cdd19b9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_12dgr160_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_12dgr160_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OMBZLM" metaid="_01570b3c-6b93-4c60-9833-0752ff28d461" name="2_Octaprenyl_6_methoxy_benzoquinol_methylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002810</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.1.1.201</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_01570b3c-6b93-4c60-9833-0752ff28d461"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.201"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002810"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2ombzl_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2ommbl_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ahcys_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TSULabcpp" metaid="_8460b634-1a44-4244-a0ef-84ccf29747a9" name="thiosulfate_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004070 AND XFCFBP8418_004080 AND XFCFBP8418_004090 AND XFCFBP8418_004100</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8460b634-1a44-4244-a0ef-84ccf29747a9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004100"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004090"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004080"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_tsul_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_tsul_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRTRS" metaid="b8eab933-0fa6-4c20-bedd-edae289ea018" name="Threonyl_tRNA_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011800</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 6.1.1.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b8eab933-0fa6-4c20-bedd-edae289ea018"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011800"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_trnathr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thr_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thrtrna_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRAGSr" metaid="_013f4f8f-0241-4957-bada-351b1d2228a8" name="phosphoribosylglycinamide_synthase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_001040</p> <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> <p>EC_NUMBER: 6.3.4.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_013f4f8f-0241-4957-bada-351b1d2228a8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001040"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pram_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gar_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP160" metaid="_2eb409c6-b02a-4490-962f-92cb2676f703" name="phosphatidylglycerol_phosphate_phosphatase__n_C16_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 3.1.3.27</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2eb409c6-b02a-4490-962f-92cb2676f703"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pgp160_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pg160_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYStex" metaid="ab144e88-6902-4e91-ae5a-c420ed7d4cc7" name="L_cysteine_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ab144e88-6902-4e91-ae5a-c420ed7d4cc7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cys_L_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cys_L_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HCO3E" metaid="c28c9d1c-57dd-419d-925b-53bc5d6054f3" name="HCO3_equilibration_reaction" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010460</p> <p>SUBSYSTEM: Cyanate_degradation</p> <p>EC_NUMBER: 4.2.1.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c28c9d1c-57dd-419d-925b-53bc5d6054f3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010460"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_hco3_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP161" metaid="_69083ce4-81a0-4c4a-beaa-6b65e08b2e1b" name="phosphatidylglycerol_phosphate_phosphatase__n_C16_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 3.1.3.27</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_69083ce4-81a0-4c4a-beaa-6b65e08b2e1b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pgp161_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pg161_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TMPKr" metaid="_0198f89e-6891-4d38-bcb7-5edf188f5c07" name="thiamine_phosphate_kinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_009740</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.7.4.16</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0198f89e-6891-4d38-bcb7-5edf188f5c07"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.16"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009740"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_thmmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thmpp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_FRMD" metaid="ce369cc1-6ad5-4d1b-bf90-592514d09e8b" name="R_DM_FRMD" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ce369cc1-6ad5-4d1b-bf90-592514d09e8b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_frmd_c" stoichiometry="1"/> </listOfReactants> <listOfProducts/> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS9" metaid="_5bc43a5a-6127-4454-ba97-cb53be9790ed" name="R_AACPS9" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025958</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.2.1.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5bc43a5a-6127-4454-ba97-cb53be9790ed"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025958"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_octa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ocACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OPHBDC" metaid="_4df281e2-fe01-4f86-b3c4-59a537c52c37" name="Octaprenyl_hydroxybenzoate_decarboxylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4df281e2-fe01-4f86-b3c4-59a537c52c37"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3ophb_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_2oph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL141t2pp" metaid="_0b52d4fd-a030-47fb-99bf-0a40e19a3cb4" name="fatty_acid_CoA_ligase__tetradecenoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.2.1.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0b52d4fd-a030-47fb-99bf-0a40e19a3cb4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ttdcea_p" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_tdecoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADNtex" metaid="_5401ac99-0289-4bde-806c-67175d1ede26" name="Adenosine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5401ac99-0289-4bde-806c-67175d1ede26"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_adn_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_adn_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACt2rex" metaid="c7e5b008-44fc-4774-91ff-3ac43427dd93" name="R_ACt2rex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c7e5b008-44fc-4774-91ff-3ac43427dd93"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ac_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ac_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDPG4E" metaid="_4d72f9cb-f661-4f28-9738-3104f805018d" name="UDPglucose_4_epimerase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 5.1.3.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4d72f9cb-f661-4f28-9738-3104f805018d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.3.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_udpg_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_udpgal_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP11" metaid="_39c287d2-22d6-4e29-ba3e-c41135c6196b" name="Nucleoside_triphosphate_pyrophosphorylase__xtp_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002620</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.6.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_39c287d2-22d6-4e29-ba3e-c41135c6196b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002620"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_xtp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_xmp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP10" metaid="ac88c72c-c847-4b90-a7cf-67d2b7d7baba" name="Nucleoside_triphosphate_pyrophosphorylase__ditp_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002620</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.6.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ac88c72c-c847-4b90-a7cf-67d2b7d7baba"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002620"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ditp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dimp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AKP1" metaid="_5f39b478-414d-4cff-80b0-3471249098b5" name="alkaline_phosphatase__Dihydroneopterin_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006010</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 3.1.3.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5f39b478-414d-4cff-80b0-3471249098b5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006010"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ahdt_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="3"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="3"/> <speciesReference constant="true" species="M_dhnpt_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDCP3App" metaid="_46a42bc0-a5a3-4663-b4f2-098b6013a76d" name="murein_L_D_carboxypeptidase__murein5px3p___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> <p>SUBSYSTEM: Murein_Biosynthesis</p> <p>EC_NUMBER: 3.4.17.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_46a42bc0-a5a3-4663-b4f2-098b6013a76d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_murein5px3p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_murein3px3p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_alaala_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_fru_e" metaid="bd070f57-ef0c-4e22-8ebb-4b130fee5e15" name="R_EX_fru_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#bd070f57-ef0c-4e22-8ebb-4b130fee5e15"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_fru_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G5SD" metaid="_5e5a6203-6e16-45a3-ac35-68474577faeb" name="glutamate_5_semialdehyde_dehydrogenase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025220</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 1.2.1.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5e5a6203-6e16-45a3-ac35-68474577faeb"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025220"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glu5p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glu5sa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG120abcpp" metaid="_1975a1ad-dcdc-4c11-8cc8-585ca1e0189d" name="phosphatidylglycerol_transport_via_ABC_system__n_C12_0__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1975a1ad-dcdc-4c11-8cc8-585ca1e0189d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pg120_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pg120_p" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALATRS" metaid="_10bf1fc9-8ae9-4c5e-b9a5-1272e728f66b" name="Alanyl_tRNA_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015200</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 6.1.1.7</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_10bf1fc9-8ae9-4c5e-b9a5-1272e728f66b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.7"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015200"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trnaala_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_alatrna_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UGLT" metaid="f5315705-4bdc-4bd0-bde5-4086d5e04555" name="UDPglucose__hexose_1_phosphate_uridylyltransferase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 2.7.7.12</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f5315705-4bdc-4bd0-bde5-4086d5e04555"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.12"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gal1p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udpg_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_g1p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udpgal_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGDI_1" metaid="_9a35f452-ad2d-45eb-968e-861d802e0d77" name="R_AGDI_1" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004890</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 3.5.3.12</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9a35f452-ad2d-45eb-968e-861d802e0d77"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.3.12"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_agm_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_Ncbmpts_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ICYSDS" metaid="c5d2b5ae-ffc2-4230-b55c-96ce23335f77" name="ISC_Cysteine_desulfuration" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002960</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c5d2b5ae-ffc2-4230-b55c-96ce23335f77"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_iscs_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_iscssh_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS160pp" metaid="_5537e257-21c6-450f-a2aa-66f24e786a4b" name="cardiolipin_synthase__periplasmic__n_C16_0_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5537e257-21c6-450f-a2aa-66f24e786a4b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pg160_p" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_clpn160_p" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UGMDDS" metaid="_6a1f65bb-3745-42d0-938e-35e94dab6724" name="UDP_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_alanine_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011290</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.3.2.10</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6a1f65bb-3745-42d0-938e-35e94dab6724"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.10"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011290"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_alaala_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ugmd_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ugmda_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALAt2pp" metaid="_3b2d1e9b-1c85-4c12-82dd-7cff859a2796" name="L_alanine_transport_in_via_proton_symport__periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3b2d1e9b-1c85-4c12-82dd-7cff859a2796"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ala_L_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS8" metaid="_083a9bec-2e42-4a56-9543-5e74f0b5fbec" name="R_AACPS8" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025957</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.2.1.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_083a9bec-2e42-4a56-9543-5e74f0b5fbec"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025957"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dca_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dcaACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ETOHtrpp" metaid="be0ab22f-7c5e-46a5-912b-90282c14ca8d" name="R_ETOHtrpp" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: Spontaneous</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#be0ab22f-7c5e-46a5-912b-90282c14ca8d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_etoh_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_etoh_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA161" metaid="c5cb8e82-ea82-41ec-97c0-030e7cfc14c8" name="Phosphatidylserine_syntase__n_C16_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.8.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c5cb8e82-ea82-41ec-97c0-030e7cfc14c8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cdpdhdec9eg_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ps161_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS7" metaid="_881173e0-e214-4f00-9868-da894511bbf9" name="R_AACPS7" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025956</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.2.1.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_881173e0-e214-4f00-9868-da894511bbf9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025956"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ddca_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ddcaACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA160" metaid="_3af0fb3a-041f-49ca-a021-1dff6738a72b" name="Phosphatidylserine_syntase__n_C16_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.8.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3af0fb3a-041f-49ca-a021-1dff6738a72b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cdpdhdecg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ps160_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS6" metaid="_72e77e6a-c3b9-43cc-b100-5758dbd25509" name="R_AACPS6" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025955</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.2.1.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_72e77e6a-c3b9-43cc-b100-5758dbd25509"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025955"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ocdca_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ocdcaACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MMSAD3" metaid="c4305d14-50b5-4e44-9117-70f366f9fc84" name="methylmalonate_semialdehyde_dehydrogenase__malonic_semialdehyde_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 1.2.1.18</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c4305d14-50b5-4e44-9117-70f366f9fc84"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.18"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_msa_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS5" metaid="cc8eef06-b2af-4f40-a78c-dd54928aa991" name="R_AACPS5" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025954</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.2.1.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#cc8eef06-b2af-4f40-a78c-dd54928aa991"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025954"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ocdcea_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_octeACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS4" metaid="_5058549f-0714-424c-bdba-27365bbd9aef" name="R_AACPS4" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025953</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.2.1.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5058549f-0714-424c-bdba-27365bbd9aef"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025953"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_hdcea_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hdeACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LYSt3r" metaid="_4eee9502-90f0-4fef-b8f3-ceedca7c6099" name="R_LYSt3r" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_013540</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4eee9502-90f0-4fef-b8f3-ceedca7c6099"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013540"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_lys_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_lys_L_e" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS3" metaid="ebe987f4-b5a1-4b5c-b3a0-ee9e21ca82ba" name="R_AACPS3" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025952</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.2.1.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ebe987f4-b5a1-4b5c-b3a0-ee9e21ca82ba"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025952"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_hdca_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_palmACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OCOAT1r" metaid="_42a21866-b7d0-4ff6-8ee2-8d37d998c3ec" name="3_oxoacid_CoA_transferase__Succinyl_CoA__acetoacetate_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 2.8.3.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_42a21866-b7d0-4ff6-8ee2-8d37d998c3ec"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.8.3.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_succoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acac_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_aacoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYC3Pabcpp" metaid="_242fc832-4f77-4608-b964-ee1b8debb0a3" name="sn_Glycerol_3_phosphate_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_242fc832-4f77-4608-b964-ee1b8debb0a3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc3p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS120" metaid="_4fc491f7-a221-48ec-9446-38f1687f0093" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C12_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.3.1.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4fc491f7-a221-48ec-9446-38f1687f0093"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dcaACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_3oddecACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS2" metaid="_6000cb6e-ade8-45f3-98e9-39dc1d414e56" name="R_AACPS2" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025951</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.2.1.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6000cb6e-ade8-45f3-98e9-39dc1d414e56"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025951"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ttdcea_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_tdeACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOX1tex" metaid="_93de9196-0857-4430-a373-86039c814f4d" name="R_METSOX1tex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_93de9196-0857-4430-a373-86039c814f4d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_metsox_S_L_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_metsox_S_L_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS121" metaid="_7dc727be-3606-40dd-9c9a-7ba4444a936c" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C12_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.3.1.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7dc727be-3606-40dd-9c9a-7ba4444a936c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cdec3eACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_3ocddec5eACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS1" metaid="_9d4ae961-5fcc-416e-8f9f-dbc6ca85a10a" name="R_AACPS1" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025950</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.2.1.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9d4ae961-5fcc-416e-8f9f-dbc6ca85a10a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ttdca_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_myrsACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FMNRx2" metaid="d4736fee-2215-4fbb-a33e-71063cbc9056" name="FMN_reductase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002700 AND XFCFBP8418_002710</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.5.1.38</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d4736fee-2215-4fbb-a33e-71063cbc9056"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.38"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002710"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002700"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fmn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fmnh2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_LesA_e" metaid="_97bd024a-a074-4c59-b585-7cd099d362f0" name="R_DM_LesA_e" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_97bd024a-a074-4c59-b585-7cd099d362f0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_LesA_e" stoichiometry="1"/> </listOfReactants> <listOfProducts/> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL80t2pp" metaid="_901fc987-d81e-4e25-a9b6-683c318ff94d" name="fatty_acid_CoA_ligase__octanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.2.1.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_901fc987-d81e-4e25-a9b6-683c318ff94d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_octa_p" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_occoa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP181" metaid="_44c752e9-a069-476f-93a5-d633b4fb84d5" name="phosphatidylglycerol_phosphate_phosphatase__n_C18_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 3.1.3.27</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_44c752e9-a069-476f-93a5-d633b4fb84d5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pgp181_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pg181_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP180" metaid="_9bf18a9c-6d98-4bce-852e-d76f7cb4166b" name="phosphatidylglycerol_phosphate_phosphatase__n_C18_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 3.1.3.27</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9bf18a9c-6d98-4bce-852e-d76f7cb4166b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pgp180_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pg180_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGAMT" metaid="_6703ddcc-d856-4bb4-81b8-3bee381864bc" name="phosphoglucosamine_mutase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003010</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 5.4.2.10</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6703ddcc-d856-4bb4-81b8-3bee381864bc"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.2.10"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003010"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gam1p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gam6p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FORtppi" metaid="b520ec68-f923-44e9-8ec6-1d9682bc9a43" name="formate_transport_via_diffusion__cytoplasm_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b520ec68-f923-44e9-8ec6-1d9682bc9a43"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_for_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3PEPTabcpp" metaid="af26fc82-0b1d-48f8-9a47-605ace91c3ef" name="tripeptide__LalaDgluMdap__transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004070 ) OR ( XFCFBP8418_004550 ) OR ( XFCFBP8418_007680 ) OR ( XFCFBP8418_010500 ) OR ( XFCFBP8418_013240 ) OR ( XFCFBP8418_019450 ) OR ( XFCFBP8418_022120 ) OR ( XFCFBP8418_024570 ) OR ( XFCFBP8418_024670 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#af26fc82-0b1d-48f8-9a47-605ace91c3ef"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010500"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019450"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024570"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013240"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022120"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_LalaDgluMdap_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_LalaDgluMdap_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SDPDS" metaid="_443aa0fb-d4f8-44c9-8b90-4dd6660bb936" name="succinyl_diaminopimelate_desuccinylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015120</p> <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> <p>EC_NUMBER: 3.5.1.18</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_443aa0fb-d4f8-44c9-8b90-4dd6660bb936"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.18"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015120"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_sl26da_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_26dap_LL_c" stoichiometry="1"/> <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Kt2tex" metaid="_91524f00-6fa5-476e-a636-6f8fc06a942d" name="R_Kt2tex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_91524f00-6fa5-476e-a636-6f8fc06a942d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_k_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_k_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EPStexXF" metaid="_3d1726d9-e87d-47e6-a3cc-04bcf384654e" name="R_EPStexXF" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021490</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3d1726d9-e87d-47e6-a3cc-04bcf384654e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021490"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_EPS_XF_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_EPS_XF_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE160abcpp" metaid="_34f9a2fd-7e5b-4a2f-bf94-760e334fbeb7" name="phosphatidylethanolamine_transport_via_ABC_system__n_C16_0__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_34f9a2fd-7e5b-4a2f-bf94-760e334fbeb7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pe160_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pe160_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR140tipp" metaid="a83a9158-b98d-4ead-b7b5-a0fde97b8ed5" name="R_12DGR140tipp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a83a9158-b98d-4ead-b7b5-a0fde97b8ed5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_12dgr140_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_12dgr140_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_so3_e" metaid="_3bb6c9dd-2ae2-4a45-ab92-96297b8b53e0" name="R_EX_so3_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3bb6c9dd-2ae2-4a45-ab92-96297b8b53e0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_so3_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THYMtex" metaid="_2e56144f-24f5-4667-80e1-80365102e1f7" name="R_THYMtex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2e56144f-24f5-4667-80e1-80365102e1f7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_thym_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_thym_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LPSS2XF" metaid="_3df2e4a4-fd35-4c2f-871d-5aa2f6284b02" name="R_LPSS2XF" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_001200</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3df2e4a4-fd35-4c2f-871d-5aa2f6284b02"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001200"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_core_kdo2lip6_XF_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udpxyl_c" stoichiometry="320"/> <speciesReference constant="true" species="M_dtdprmn_c" stoichiometry="2188"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dtdp_c" stoichiometry="2188"/> <speciesReference constant="true" species="M_OLPS_XF_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udp_c" stoichiometry="320"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACCOAL2r" metaid="_938a464e-1718-4a3f-b0e1-3d0889fd7471" name="R_ACCOAL2r" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020630</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 6.2.1.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_938a464e-1718-4a3f-b0e1-3d0889fd7471"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020630"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ppa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppcoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP180abcpp" metaid="_2b89ef9a-099e-401d-bdd2-f1b9270863b4" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C18_0__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2b89ef9a-099e-401d-bdd2-f1b9270863b4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pgp180_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pgp180_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TREHpp" metaid="b82dba7e-27f5-4078-89c5-c8b9dcd5e769" name="alpha_alpha_trehalase__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 3.2.1.28</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b82dba7e-27f5-4078-89c5-c8b9dcd5e769"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.28"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_tre_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glc_D_p" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TTDCEAtexi" metaid="_60d4b136-801a-4f2e-8c68-7d58c19960df" name="R_TTDCEAtexi" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_60d4b136-801a-4f2e-8c68-7d58c19960df"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ttdcea_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ttdcea_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KAS14" metaid="_7bdb0e75-55bc-4fe1-bf0d-6888bf0d0261" name="beta_ketoacyl_ACP_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> <p>SUBSYSTEM: Membrane_Lipid_Metabolism</p> <p>EC_NUMBER: 2.3.1.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7bdb0e75-55bc-4fe1-bf0d-6888bf0d0261"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_acACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_actACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE2tex" metaid="f7661dec-e864-4895-a1c8-389b04f18a43" name="iron__II__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f7661dec-e864-4895-a1c8-389b04f18a43"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_fe2_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_fe2_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_AMOB" metaid="dcaacf85-ca34-4e84-9012-59026c2aa5a0" name="Sink_needed_to_allow_S_Adenosyl_4_methylthio_2_oxobutanoate_to_leave_system" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#dcaacf85-ca34-4e84-9012-59026c2aa5a0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_amob_c" stoichiometry="1"/> </listOfReactants> <listOfProducts/> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALLTNr" metaid="c5916cf1-d154-4738-be1f-27ed22e93f83" name="R_ALLTNr" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025380</p> <p>SUBSYSTEM: Nitrogen_Metabolism</p> <p>EC_NUMBER: 3.5.2.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c5916cf1-d154-4738-be1f-27ed22e93f83"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.2.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025380"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_alltn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_alltt_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GALKr" metaid="_1b061ea9-269a-4250-b937-b58c2e495156" name="galactokinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 2.7.1.6</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1b061ea9-269a-4250-b937-b58c2e495156"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.6"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gal_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gal1p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KAS15" metaid="f7e312d1-3191-40ab-8df4-da52647f585d" name="beta_ketoacyl_ACP_synthase__2_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_017940</p> <p>SUBSYSTEM: Membrane_Lipid_Metabolism</p> <p>EC_NUMBER: 2.3.1.180</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f7e312d1-3191-40ab-8df4-da52647f585d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.180"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017940"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_actACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MPTG" metaid="cdcd4102-ac04-4274-9c28-635253283c7b" name="murein_polymerizing_transglycosylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004700 AND XFCFBP8418_008630 ) OR ( XFCFBP8418_004700 AND XFCFBP8418_010420 ) OR ( XFCFBP8418_004700 AND XFCFBP8418_020460 )</p> <p>SUBSYSTEM: Murein_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#cdcd4102-ac04-4274-9c28-635253283c7b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020460"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008630"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010420"/> </fbc:and> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_uaagmda_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_udcpdp_c" stoichiometry="2"/> <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAGPT3" metaid="b0f5ce42-1b54-4bf5-850c-120ea691fa8a" name="UDP_N_acetylglucosamine_N_acetylmuramyl__pentapeptide_pyrophosphoryl_undecaprenol_N_acetylglucosamine_transferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011260</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.4.1.227</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b0f5ce42-1b54-4bf5-850c-120ea691fa8a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.1.227"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011260"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_uagmda_c" stoichiometry="1"/> <speciesReference constant="true" species="M_uacgam_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_uaagmda_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA181" metaid="ac6bbdd2-a452-49af-a324-bea473b59609" name="Phosphatidylserine_syntase__n_C18_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.8.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ac6bbdd2-a452-49af-a324-bea473b59609"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cdpdodec11eg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ps181_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS100" metaid="_7838ce1b-c744-4ef7-b2cc-c53afa1ac0a2" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C10_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.3.1.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7838ce1b-c744-4ef7-b2cc-c53afa1ac0a2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ocACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3odecACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA180" metaid="e090a074-5339-4dc6-999e-1b5d6b1f9c99" name="Phosphatidylserine_syntase__n_C18_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.8.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e090a074-5339-4dc6-999e-1b5d6b1f9c99"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cdpdodecg_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ps180_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAGDP" metaid="_7d0efe00-c44c-4c84-b6fb-e21815fc8e35" name="UDP_N_acetylglucosamine_diphosphorylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023670</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.7.7.23</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7d0efe00-c44c-4c84-b6fb-e21815fc8e35"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.23"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023670"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acgam1p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_uacgam_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACCITRH" metaid="beab3f41-ac76-4242-925b-87d9c7fed86a" name="R_ACCITRH" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025270</p> <p>SUBSYSTEM: Glutamate_Metabolism</p> <p>EC_NUMBER: 3.5.1.16</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#beab3f41-ac76-4242-925b-87d9c7fed86a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.16"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025270"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_accitr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_citr_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NAt3_1" metaid="c13f60cb-78c9-45d6-8713-98dc58e03a49" name="R_NAt3_1" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_001440</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c13f60cb-78c9-45d6-8713-98dc58e03a49"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001440"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> <speciesReference constant="true" species="M_na1_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_na1_e" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_chitin_polymer_e" metaid="_433c8e40-7bec-4183-8a78-017746677832" name="R_EX_chitin_polymer_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_433c8e40-7bec-4183-8a78-017746677832"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_chitin_polymer_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IPPMIb" metaid="f8f8e4fd-f967-4d82-860a-e95897d7c117" name="2_isopropylmalate_hydratase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021510 AND XFCFBP8418_021520</p> <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> <p>EC_NUMBER: 4.2.1.33</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f8f8e4fd-f967-4d82-860a-e95897d7c117"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.33"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021520"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021510"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_2ippm_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_3c3hmp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IPPMIa" metaid="d0487c14-22ef-4ec4-91f1-7a4b60b01854" name="3_isopropylmalate_dehydratase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021510 AND XFCFBP8418_021520</p> <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> <p>EC_NUMBER: 4.2.1.33</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d0487c14-22ef-4ec4-91f1-7a4b60b01854"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.33"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021520"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021510"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3c2hmp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_2ippm_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADEt2rpp" metaid="_57ae459d-f59e-404a-867e-2fb6c241c5fb" name="adenine_transport_via_proton_symport__reversible___periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_57ae459d-f59e-404a-867e-2fb6c241c5fb"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> <speciesReference constant="true" species="M_ade_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ade_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UREA" metaid="e53cacbc-1df2-45a8-87e3-888fc0cc1d8b" name="urease" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 3.5.1.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e53cacbc-1df2-45a8-87e3-888fc0cc1d8b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_urea_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nh4_c" stoichiometry="2"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG141abcpp" metaid="a6b6b0c3-0333-4a06-9d42-71915151005e" name="phosphatidylglycerol_transport_via_ABC_system__n_C14_1__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a6b6b0c3-0333-4a06-9d42-71915151005e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pg141_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pg141_p" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRPPS" metaid="c1d21756-841a-4c8f-a3ec-050b279a553c" name="phosphoribosylpyrophosphate_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_012870</p> <p>SUBSYSTEM: Histidine_Metabolism</p> <p>EC_NUMBER: 2.7.6.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c1d21756-841a-4c8f-a3ec-050b279a553c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.6.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012870"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT120" metaid="_3bfe3995-07a7-478d-afcb-33082a6a791a" name="1_tetradecanoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C12_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.3.1.51</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3bfe3995-07a7-478d-afcb-33082a6a791a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ddcaACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_1ddecg3p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pa120_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN181" metaid="b2ea9316-62d4-4d5f-8377-74f4f759ee1a" name="CDP_diacylglycerol_synthetase__n_C18_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.7.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b2ea9316-62d4-4d5f-8377-74f4f759ee1a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pa181_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cdpdodec11eg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_X5PL3E" metaid="a132e0d4-615d-4cb2-80d5-b164796db653" name="R_X5PL3E" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a132e0d4-615d-4cb2-80d5-b164796db653"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_xu5p_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ru5p_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HPPK2" metaid="_47036610-be70-43b0-8ff1-24d147c86c79" name="6_hydroxymethyl_dihydropterin_pyrophosphokinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026570</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.7.6.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_47036610-be70-43b0-8ff1-24d147c86c79"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.6.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026570"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_6hmhpt_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_6hmhptpp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE180abcpp" metaid="ac3dee43-de4a-4448-9370-ecc7926b2fa4" name="phosphatidylethanolamine_transport_via_ABC_system__n_C18_0__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ac3dee43-de4a-4448-9370-ecc7926b2fa4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pe180_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pe180_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN180" metaid="fff29606-f162-4780-93f3-475b874c2f59" name="CDP_diacylglycerol_synthetase__n_C18_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.7.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#fff29606-f162-4780-93f3-475b874c2f59"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pa180_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cdpdodecg_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDCPDPtppi" metaid="_7a4c3dd9-4e12-466f-9bbc-3dbdb36e3b6d" name="R_UDCPDPtppi" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7a4c3dd9-4e12-466f-9bbc-3dbdb36e3b6d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_udcpdp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_udcpdp_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CD2tex" metaid="cee97fe3-a814-4f9d-b69d-6cdb53aabc3f" name="cadmium__Cd_2__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#cee97fe3-a814-4f9d-b69d-6cdb53aabc3f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cd2_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cd2_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_rib_D_e" metaid="_20e83a14-6cb4-4e1b-9c32-bfa6604418b3" name="R_EX_rib_D_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_20e83a14-6cb4-4e1b-9c32-bfa6604418b3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_rib_D_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYCt" metaid="_5300ba34-0572-43a1-8e4b-7766ce41b435" name="R_GLYCt" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020710</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5300ba34-0572-43a1-8e4b-7766ce41b435"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glyc_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glyc_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_2THZPSN" metaid="_29ed181c-b67e-4396-8010-a03a6ca9a424" name="R_2THZPSN" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002960 AND XFCFBP8418_010710 AND XFCFBP8418_011380 AND XFCFBP8418_025440</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_29ed181c-b67e-4396-8010-a03a6ca9a424"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025440"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011380"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010710"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2c4mthzep_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAPabcpp" metaid="_4f146b55-b8fe-46c2-9a7a-bf18896903c7" name="R_DAPabcpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4f146b55-b8fe-46c2-9a7a-bf18896903c7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_26dap_M_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_26dap_M_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADEtex" metaid="cbfbcfdf-22e9-4308-ac89-9194911f2982" name="adenine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#cbfbcfdf-22e9-4308-ac89-9194911f2982"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ade_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ade_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDCP2pp" metaid="_9b337c50-c719-42ec-b785-3c2dfe7f7cef" name="murein_D_D_carboxypeptidase__murein5px4px4p___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_018620 ) OR ( XFCFBP8418_020420 )</p> <p>SUBSYSTEM: Murein_Biosynthesis</p> <p>EC_NUMBER: 3.4.16.4</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9b337c50-c719-42ec-b785-3c2dfe7f7cef"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.16.4"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020420"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> <speciesReference constant="true" species="M_murein5px4px4p_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> <speciesReference constant="true" species="M_murein4px4px4p_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSDabcpp" metaid="db962fa4-a856-44b9-a7a1-c3b019636173" name="R_CYSDabcpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#db962fa4-a856-44b9-a7a1-c3b019636173"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cys_D_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cys_D_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UACMAMO" metaid="b8359d44-4150-4ea9-ac92-65b3e076b3f6" name="UDP_N_acetyl_D_mannosamine_oxidoreductase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023250</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.336</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b8359d44-4150-4ea9-ac92-65b3e076b3f6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.336"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023250"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="2"/> <speciesReference constant="true" species="M_uacmam_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadh_c" stoichiometry="2"/> <speciesReference constant="true" species="M_uacmamu_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA120" metaid="c1911f53-b995-4962-844e-95575d086deb" name="Phosphatidylserine_syntase__n_C12_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.8.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c1911f53-b995-4962-844e-95575d086deb"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cdpdddecg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ps120_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHRPL" metaid="_144ecfe1-5e21-461a-b6c7-237648271450" name="Chorismate_pyruvate_lyase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011490</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 4.1.3.40</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_144ecfe1-5e21-461a-b6c7-237648271450"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.3.40"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011490"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_chor_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_4hbz_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PItex" metaid="_021e930c-78bd-4508-9b10-628161093fbc" name="glycero_3_phospho_1_inositol_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_021e930c-78bd-4508-9b10-628161093fbc"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_g3pi_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_g3pi_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP181abcpp" metaid="_6910f36a-f866-44ec-963f-fb627be23d8e" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C18_1__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6910f36a-f866-44ec-963f-fb627be23d8e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pgp181_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pgp181_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_COBALT2tex" metaid="_24ace21b-f744-4cb5-8d4e-f117f90be7c5" name="cobalt__Co_2__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_24ace21b-f744-4cb5-8d4e-f117f90be7c5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cobalt2_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cobalt2_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CITt3tex" metaid="_7f0702f7-9a84-4a84-8655-b46f3695f187" name="R_CITt3tex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7f0702f7-9a84-4a84-8655-b46f3695f187"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cit_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cit_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTPCII2" metaid="_0b1ee868-2ca5-41ae-9660-fd42fbfd9a53" name="GTP_cyclohydrolase_II__25drapp_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_001170</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 3.5.4.25</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0b1ee868-2ca5-41ae-9660-fd42fbfd9a53"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.25"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001170"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="3"/> <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_25drapp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYCL" metaid="_34a00b12-a3b3-4efe-bfd8-ea0b3648edf7" name="Glycine_Cleavage_System" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003740 AND XFCFBP8418_010560 AND XFCFBP8418_015760 AND XFCFBP8418_015770</p> <p>SUBSYSTEM: Folate_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_34a00b12-a3b3-4efe-bfd8-ea0b3648edf7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003740"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015770"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010560"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015760"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HBZOPT" metaid="_859b4d9e-d4e9-48fa-8e34-605aeb6bd094" name="Hydroxybenzoate_octaprenyltransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_014680</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.5.1.39</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_859b4d9e-d4e9-48fa-8e34-605aeb6bd094"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.39"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014680"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_octdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_4hbz_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3ophb_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDCP2Bpp" metaid="_5bc3d4c2-03ca-4d63-997a-b036b8201da4" name="murein_L_D_carboxypeptidase__murein4p3p___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> <p>SUBSYSTEM: Murein_Biosynthesis</p> <p>EC_NUMBER: 3.4.17.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5bc3d4c2-03ca-4d63-997a-b036b8201da4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_murein4p3p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_murein3p3p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSabcpp" metaid="bc9f4672-0bd3-4db4-a8de-9293b57677df" name="L_cysteine_uptake_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#bc9f4672-0bd3-4db4-a8de-9293b57677df"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cys_L_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NITL4" metaid="_4f226009-7c46-4f5c-bc20-7d6b71729812" name="nitrilase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004900</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: 3.5.5.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4f226009-7c46-4f5c-bc20-7d6b71729812"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.5.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004900"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> <speciesReference constant="true" species="M_pheacnit_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pac_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_BIOMASS_c" metaid="_4871584b-a1fb-4f05-bb6a-81011942db8a" name="R_DM_BIOMASS_c" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4871584b-a1fb-4f05-bb6a-81011942db8a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_BIOMASS_XF_c" stoichiometry="1"/> </listOfReactants> <listOfProducts/> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAPDC" metaid="_3ae6ce1a-3c5a-4f21-8cfc-bcd76f8eef8d" name="diaminopimelate_decarboxylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023860</p> <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> <p>EC_NUMBER: 4.1.1.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3ae6ce1a-3c5a-4f21-8cfc-bcd76f8eef8d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023860"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_26dap_M_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_lys_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NITL5" metaid="_1307019b-a1b1-4773-8222-16cff7d40ca3" name="nitrilase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004900</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 3.5.5.7</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1307019b-a1b1-4773-8222-16cff7d40ca3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.5.7"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004900"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> <speciesReference constant="true" species="M_bzonit_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_bz_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SO3abcpp" metaid="faf82e1a-1d8a-4788-bd9a-b45d27c4d584" name="R_SO3abcpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004070 AND XFCFBP8418_004080 AND XFCFBP8418_004090 AND XFCFBP8418_004100</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#faf82e1a-1d8a-4788-bd9a-b45d27c4d584"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004100"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004090"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004080"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_so3_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_so3_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACM6PH" metaid="_63d3f650-18a4-4ff6-9e83-d579b44b3efb" name="N_acetylmuramate_6_phosphate_hydrolase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 4.2.1.126</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_63d3f650-18a4-4ff6-9e83-d579b44b3efb"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.126"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acmum6p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_acgam6p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_lac_D_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DSBCGT" metaid="_96b1c983-3e7a-4693-9742-690df645eb69" name="DsbC_glutathione_thiotransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003390</p> <p>SUBSYSTEM: Protein_disulfide_bond_transfer</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_96b1c983-3e7a-4693-9742-690df645eb69"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003390"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dsbcox_p" stoichiometry="1"/> <speciesReference constant="true" species="M_gthrd_p" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dsbcrd_p" stoichiometry="1"/> <speciesReference constant="true" species="M_gthox_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NMNN" metaid="_75340bb8-4f57-4630-b302-0e410854ea1a" name="R_NMNN" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 3.2.2.14</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_75340bb8-4f57-4630-b302-0e410854ea1a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.2.14"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nmn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ncam_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OGMEACPD" metaid="_0882e8db-1b85-40e8-8720-84d0c41ebce8" name="3_Oxo_glutaryl__ACP__methyl_ester_dehydratase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024890</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 4.2.1.59</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0882e8db-1b85-40e8-8720-84d0c41ebce8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_hgmeACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_egmeACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_k_e" metaid="_1c224853-b9bd-4b91-9c12-031dc274cf2b" name="R_EX_k_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1c224853-b9bd-4b91-9c12-031dc274cf2b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_k_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG161abcpp" metaid="_4eae385e-cccb-4a2c-bee1-6769794a402c" name="phosphatidylglycerol_transport_via_ABC_system__n_C16_1__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4eae385e-cccb-4a2c-bee1-6769794a402c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pg161_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pg161_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RBKr" metaid="_28e4dd65-346a-4793-8d21-f58e2830dc0c" name="ribokinase_reversible" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_008660</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 2.7.1.15</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_28e4dd65-346a-4793-8d21-f58e2830dc0c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.15"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008660"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_rib_D_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MICITDr" metaid="_16a96a25-935d-4afd-b4ca-b2b918509ba0" name="2_methylisocitrate_dehydratase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025910</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 4.2.1.99</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_16a96a25-935d-4afd-b4ca-b2b918509ba0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.99"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_2mcacn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_micit_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT140" metaid="_76c327a0-64f3-48af-bac2-21e08135d8f0" name="1_tetradecanoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C14_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.3.1.51</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_76c327a0-64f3-48af-bac2-21e08135d8f0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_myrsACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_1tdecg3p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pa140_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAMAGS" metaid="_0fe35e46-cae4-4900-aab6-9b60b92b21ee" name="UDP_N_acetylmuramoyl_L_alanyl_D_glutamate_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023840</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.3.2.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0fe35e46-cae4-4900-aab6-9b60b92b21ee"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023840"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glu_D_c" stoichiometry="1"/> <speciesReference constant="true" species="M_uama_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_uamag_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRS" metaid="_9ecfd703-3f9b-405b-ac8f-39bd0e0b73d5" name="threonine_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020360</p> <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> <p>EC_NUMBER: 4.2.3.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9ecfd703-3f9b-405b-ac8f-39bd0e0b73d5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.3.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020360"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_phom_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thr_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DKGLUCK" metaid="_606ba1b7-d299-4516-800f-23ce787b4edb" name="2_deoxy_5_keto_D_gluconic_acid_kinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 2.7.1.92</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_606ba1b7-d299-4516-800f-23ce787b4edb"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.92"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dkglc_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_6pddgluc_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT141" metaid="_4d748a4a-7b65-483b-a02a-dc430687525b" name="1_tetradec_7_enoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C14_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.3.1.51</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4d748a4a-7b65-483b-a02a-dc430687525b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_1tdec7eg3p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_tdeACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pa141_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN160" metaid="_690fdbee-8b0f-4df9-94bf-84e7fa117bcb" name="CDP_diacylglycerol_synthetase__n_C16_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.7.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_690fdbee-8b0f-4df9-94bf-84e7fa117bcb"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pa160_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cdpdhdecg_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN161" metaid="a97705a7-3409-4ac6-88c4-d8201067e87f" name="CDP_diacylglycerol_synthetase__n_C16_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.7.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a97705a7-3409-4ac6-88c4-d8201067e87f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pa161_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cdpdhdec9eg_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PMDPHT" metaid="_63c64b55-d57b-433b-b37b-8926231124e5" name="pyrimidine_phosphatase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005170</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_63c64b55-d57b-433b-b37b-8926231124e5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005170"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_5aprbu_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_4r5au_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S2FE2SS2" metaid="_79f20238-a43c-4471-ba5e-19db00879552" name="R_S2FE2SS2" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950 AND XFCFBP8418_002960 AND XFCFBP8418_025330</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_79f20238-a43c-4471-ba5e-19db00879552"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025330"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_sufbcd_2fe2s_c" stoichiometry="1"/> <speciesReference constant="true" species="M_sufsesh_c" stoichiometry="2"/> <speciesReference constant="true" species="M_fe2_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="7"/> <speciesReference constant="true" species="M_sufse_c" stoichiometry="2"/> <speciesReference constant="true" species="M_sufbcd_2fe2s2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDCP1App" metaid="cae4d2be-3ee7-4bb6-baa9-097d9e2efd8c" name="murein_L_D_carboxypeptidase__murein5px4p___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> <p>SUBSYSTEM: Murein_Biosynthesis</p> <p>EC_NUMBER: 3.4.17.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#cae4d2be-3ee7-4bb6-baa9-097d9e2efd8c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_murein5px4p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_alaala_p" stoichiometry="1"/> <speciesReference constant="true" species="M_murein3px4p_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HCO3tex" metaid="ed627a8a-6b03-4bec-9866-917c9efefb6a" name="R_HCO3tex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ed627a8a-6b03-4bec-9866-917c9efefb6a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_hco3_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_hco3_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_URCN" metaid="e26a7dfb-3e73-45e3-9850-e0feb8da90ae" name="urocanase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Histidine_Metabolism</p> <p>EC_NUMBER: 4.2.1.49</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e26a7dfb-3e73-45e3-9850-e0feb8da90ae"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.49"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_urcan_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_4izp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HEMEOS" metaid="_05e2bd9b-e836-41a3-b965-318c66d29860" name="Heme_O_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003980</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.5.1.141</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_05e2bd9b-e836-41a3-b965-318c66d29860"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.141"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003980"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_frdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pheme_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hemeO_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HCO3abcpp" metaid="fc79df28-db6d-4647-9a25-7e5d039f0e34" name="R_HCO3abcpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007690</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#fc79df28-db6d-4647-9a25-7e5d039f0e34"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007690"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hco3_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hco3_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACOTA" metaid="_35d3bd35-ff20-4233-ac07-f7524dd63794" name="acetylornithine_transaminase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003360</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 2.6.1.11</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_35d3bd35-ff20-4233-ac07-f7524dd63794"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.11"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003360"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_acorn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acg5sa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHPS2" metaid="_0910cfff-a0d6-449d-a8a9-69d6689a0900" name="dihydropteroate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_014930</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.5.1.15</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0910cfff-a0d6-449d-a8a9-69d6689a0900"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.15"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014930"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_4abz_c" stoichiometry="1"/> <speciesReference constant="true" species="M_6hmhptpp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dhpt_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL100t2pp" metaid="d1eae919-daa3-4d78-a329-cb01833e7d7d" name="fatty_acid_CoA_ligase__decanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.2.1.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d1eae919-daa3-4d78-a329-cb01833e7d7d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dca_p" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dcacoa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NMNtex" metaid="d126276d-34ac-45a1-8be7-c3482f615ad7" name="R_NMNtex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d126276d-34ac-45a1-8be7-c3482f615ad7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nmn_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nmn_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_O2tpp" metaid="_97b68843-fbfc-462b-9b38-b960c6232da5" name="o2_transport_via_diffusion__periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_97b68843-fbfc-462b-9b38-b960c6232da5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_o2_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR141tipp" metaid="ffc643cc-a0d4-448a-a6ec-b441b82305be" name="R_12DGR141tipp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ffc643cc-a0d4-448a-a6ec-b441b82305be"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_12dgr141_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_12dgr141_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SADT2" metaid="_5aa01bac-402d-4015-8fae-d2de0d40a3af" name="Sulfate_adenyltransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002680 AND XFCFBP8418_002690</p> <p>SUBSYSTEM: Cysteine_Metabolism</p> <p>EC_NUMBER: 2.7.7.4</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5aa01bac-402d-4015-8fae-d2de0d40a3af"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.4"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002680"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002690"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_so4_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_aps_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASP1DC" metaid="_3dad8860-fadb-4d45-b78f-ea6623501438" name="aspartate_1_decarboxylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026540</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 4.1.1.11</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3dad8860-fadb-4d45-b78f-ea6623501438"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.11"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026540"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ala_B_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA141" metaid="_96d1e5e8-7505-4e20-bb88-8de38ff45115" name="Phosphatidylserine_syntase__n_C14_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.8.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_96d1e5e8-7505-4e20-bb88-8de38ff45115"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cdpdtdec7eg_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ps141_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OGMEACPS" metaid="_035776d4-ce25-4406-adbc-5d614ecb3297" name="3_Oxo_glutaryl__ACP__methyl_ester_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_017940</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_035776d4-ce25-4406-adbc-5d614ecb3297"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017940"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_malcoame_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ogmeACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA140" metaid="b6be7b5c-9ee1-4d01-8f46-585cebd1a3b9" name="Phosphatidylserine_syntase__n_C14_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.8.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b6be7b5c-9ee1-4d01-8f46-585cebd1a3b9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cdpdtdecg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ps140_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLCtex" metaid="_42438596-6d57-4484-8c61-7ae6ea285615" name="glucose_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_42438596-6d57-4484-8c61-7ae6ea285615"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glc_D_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glc_D_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CMPN" metaid="f1e94955-c06e-4682-afdf-337ba30a04b0" name="R_CMPN" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007150</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.2.2.10</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f1e94955-c06e-4682-afdf-337ba30a04b0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.2.10"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007150"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_csn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OGMEACPR" metaid="ef87a881-74aa-4665-8b74-7390b15be581" name="3_Oxo_glutaryl__ACP__methyl_ester_reductase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.100</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ef87a881-74aa-4665-8b74-7390b15be581"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ogmeACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hgmeACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NACODA" metaid="_3f26c8e9-8f85-4cc5-a178-ac9e0dc1c6f9" name="N_acetylornithine_deacetylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025270</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3f26c8e9-8f85-4cc5-a178-ac9e0dc1c6f9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025270"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acg5sa_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu5sa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NNATr" metaid="_2adc3af3-4199-4fbf-be6c-96b4c4c930f7" name="nicotinate_nucleotide_adenylyltransferase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_019740</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.7.7.18</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2adc3af3-4199-4fbf-be6c-96b4c4c930f7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.18"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019740"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nicrnt_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dnad_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LGTHL" metaid="fcef5802-3d5d-46f2-a6ba-453e430b6219" name="lactoylglutathione_lyase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003630</p> <p>SUBSYSTEM: Methylglyoxal_Metabolism</p> <p>EC_NUMBER: 4.4.1.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#fcef5802-3d5d-46f2-a6ba-453e430b6219"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.4.1.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003630"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gthrd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_mthgxl_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_lgt_S_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_tre_e" metaid="_2b25f65c-97e2-404d-901a-2f351b852d79" name="R_EX_tre_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2b25f65c-97e2-404d-901a-2f351b852d79"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_tre_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP160pp" metaid="a1b419c0-81da-4e40-a057-a1e9407e11f6" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C16_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 3.1.3.27</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a1b419c0-81da-4e40-a057-a1e9407e11f6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pgp160_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> <speciesReference constant="true" species="M_pg160_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYAT" metaid="e9dc1a75-b6d0-406f-afa0-5fbbc5757598" name="glycine_C_acetyltransferase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004000</p> <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> <p>EC_NUMBER: 2.3.1.29</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e9dc1a75-b6d0-406f-afa0-5fbbc5757598"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.29"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004000"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2aobut_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OPMEACPR" metaid="_38311acc-fe0e-4fe8-b291-e50c8b6cd311" name="3_Oxo_pimeloyl__ACP__methyl_ester_reductase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.100</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_38311acc-fe0e-4fe8-b291-e50c8b6cd311"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_opmeACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hpmeACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OPMEACPS" metaid="de252ec5-5a95-4339-95de-75bd74c748d6" name="3_Oxo_pimeloyl__ACP__methyl_ester_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.3.1.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#de252ec5-5a95-4339-95de-75bd74c748d6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gmeACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_opmeACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NMNt7pp" metaid="d24df04a-1053-45b4-9d5b-1b2bb443830c" name="R_NMNt7pp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: 3.2.2.14</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d24df04a-1053-45b4-9d5b-1b2bb443830c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.2.14"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nmn_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ncam_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROT_pe_LesA" metaid="_5357bd7d-8ed9-4a47-9785-f9800b06ae3a" name="R_PROT_pe_LesA" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002410 AND XFCFBP8418_002430 AND XFCFBP8418_002450 AND XFCFBP8418_002490 AND XFCFBP8418_002510 AND XFCFBP8418_007090 AND XFCFBP8418_007140 AND XFCFBP8418_008580 AND XFCFBP8418_009650 AND XFCFBP8418_014460</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5357bd7d-8ed9-4a47-9785-f9800b06ae3a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002490"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007090"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002430"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002510"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008580"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002410"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007140"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009650"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014460"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002450"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="601"/> <speciesReference constant="true" species="M_LesA_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="601"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_LesA_e" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="601"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="601"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THIORDXi" metaid="_0cd67b67-db31-4c16-81ee-fb0e0ac0b203" name="hydrogen_peroxide_reductase__thioredoxin_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_009690 ) OR ( XFCFBP8418_009690 AND XFCFBP8418_013260 ) OR ( XFCFBP8418_016490 ) OR ( XFCFBP8418_027830 )</p> <p>SUBSYSTEM: Superoxide_radicals_degradation</p> <p>EC_NUMBER: 1.11.1.16</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0cd67b67-db31-4c16-81ee-fb0e0ac0b203"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.11.1.16"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009690"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027830"/> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> </fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016490"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SLNTtpp" metaid="c6a70f8d-7458-4027-a984-349491373917" name="selenite_transport_via_proton_symport__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004070 AND XFCFBP8418_004080 AND XFCFBP8418_004090</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c6a70f8d-7458-4027-a984-349491373917"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004090"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004080"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> <speciesReference constant="true" species="M_slnt_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_slnt_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN141" metaid="d26ad3a6-bebe-42cd-9237-035ba1b3eed7" name="CDP_diacylglycerol_synthetase__n_C14_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.7.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d26ad3a6-bebe-42cd-9237-035ba1b3eed7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pa141_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cdpdtdec7eg_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGTRS" metaid="_498f98ae-e4c7-42d3-8f54-d49e92362ece" name="Arginyl_tRNA_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015410</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 6.1.1.19</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_498f98ae-e4c7-42d3-8f54-d49e92362ece"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.19"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015410"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trnaarg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_argtrna_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_gam_e" metaid="_5ff50da0-3067-4ccc-bc06-431e0e095786" name="R_EX_gam_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5ff50da0-3067-4ccc-bc06-431e0e095786"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_gam_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN140" metaid="_28c0f073-5fec-4c04-8491-4d0cd1fc0982" name="CDP_diacylglycerol_synthetase__n_C14_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.7.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_28c0f073-5fec-4c04-8491-4d0cd1fc0982"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pa140_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cdpdtdecg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHNCOAT" metaid="_172f23b0-3e36-4ec7-a8f7-4877f049e313" name="R_DHNCOAT" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_000310 ) OR ( XFCFBP8418_016380 ) OR ( XFCFBP8418_027720 )</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_172f23b0-3e36-4ec7-a8f7-4877f049e313"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027720"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000310"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016380"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_14dhncoa_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dhna_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OCDCAtexi" metaid="_83ec1012-b479-41ea-9b1c-741d6ab0c55b" name="R_OCDCAtexi" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_83ec1012-b479-41ea-9b1c-741d6ab0c55b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ocdca_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ocdca_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INOSTt2pp" metaid="_60d617c5-eb84-43d2-a135-e69aea81b345" name="myo_Inositol_transport_in_via_proton_symport__periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_60d617c5-eb84-43d2-a135-e69aea81b345"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_inost_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_inost_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INDOLEtex" metaid="_3d815093-2372-46d7-b732-629120c99cb7" name="R_INDOLEtex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3d815093-2372-46d7-b732-629120c99cb7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_indole_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_indole_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CMPA_1" metaid="_3bf975a4-4ad7-4ad8-9f6b-e7e926c264a4" name="R_CMPA_1" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Glutamate_Metabolism</p> <p>EC_NUMBER: 3.5.1.53</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3bf975a4-4ad7-4ad8-9f6b-e7e926c264a4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.53"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_Ncbmpts_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ptrc_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TTDCAtex" metaid="f68853a7-bb81-4117-8b8a-d5b23354fe12" name="Tetradecanoate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f68853a7-bb81-4117-8b8a-d5b23354fe12"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ttdca_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ttdca_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BPNT" metaid="_0bd2463b-6ba8-4599-8cc9-37d09a118595" name="3__5__bisphosphate_nucleotidase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015810</p> <p>SUBSYSTEM: Cysteine_Metabolism</p> <p>EC_NUMBER: 3.1.3.7</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0bd2463b-6ba8-4599-8cc9-37d09a118595"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.7"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015810"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pap_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CBPS" metaid="d26f35f6-2ec3-4773-9be0-0c2ebea9bb7e" name="carbamoyl_phosphate_synthase__glutamine_hydrolysing_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023960 AND XFCFBP8418_023970</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 6.3.5.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d26f35f6-2ec3-4773-9be0-0c2ebea9bb7e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.5.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023970"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023960"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hco3_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="2"/> <speciesReference constant="true" species="M_cbp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALCD2y" metaid="b889036a-9533-4a29-bce6-e97aa68065d0" name="alcohol_dehydrogenase__ethanol_nadp" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021600</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b889036a-9533-4a29-bce6-e97aa68065d0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021600"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_etoh_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_acald_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EPMEACPR" metaid="_0f96bf08-f967-48f3-93bf-7dce412104f3" name="Enoylpimeloyl__ACP__methyl_ester_reductase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.3.1.10</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0f96bf08-f967-48f3-93bf-7dce412104f3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.10"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_epmeACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pmeACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOBDabcpp" metaid="a3c26352-4e70-49d6-bdbe-251095bf2931" name="molybdate_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004070 AND XFCFBP8418_004080 AND XFCFBP8418_004090 AND XFCFBP8418_004100</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a3c26352-4e70-49d6-bdbe-251095bf2931"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004100"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004090"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004080"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_mobd_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_mobd_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UMPK" metaid="_843f2051-31c6-49f8-9274-c50f7feaa5f5" name="UMP_kinase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004870 ) OR ( XFCFBP8418_024760 )</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.7.4.14</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_843f2051-31c6-49f8-9274-c50f7feaa5f5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.14"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004870"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024760"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_dextrin_e" metaid="_0d547eb7-32fb-4cfb-a882-4ca7f6e35a8d" name="R_EX_dextrin_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0d547eb7-32fb-4cfb-a882-4ca7f6e35a8d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_dextrin_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAPtex" metaid="_95c3d2bf-26e3-4528-b8d7-220421fe20b3" name="R_DAPtex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_95c3d2bf-26e3-4528-b8d7-220421fe20b3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_26dap_M_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_26dap_M_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OPMEACPD" metaid="_5bb5cc38-4c7b-4c7b-a903-879afa6edeb4" name="3_Oxo_pimeloyl__ACP__methyl_ester_dehydratase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024890</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 4.2.1.59</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5bb5cc38-4c7b-4c7b-a903-879afa6edeb4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_hpmeACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_epmeACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSr" metaid="_52a59611-b4b8-491c-8a81-77a799440f58" name="methionine_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020760</p> <p>SUBSYSTEM: Methionine_Metabolism</p> <p>EC_NUMBER: 2.1.1.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_52a59611-b4b8-491c-8a81-77a799440f58"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020760"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_hcys_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_5mthf_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_F2NAPPUDC" metaid="_32a86585-5561-443d-b82a-af62daf8dd19" name="R_F2NAPPUDC" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004820</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_32a86585-5561-443d-b82a-af62daf8dd19"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004820"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_udcpp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udpacfuc_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_f2Nappudp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MPTSS" metaid="f93c4e56-1970-4ac8-9a61-bdc9fb0932a5" name="molybdopterin_synthase_sulfurylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007180</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.7.7.80</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f93c4e56-1970-4ac8-9a61-bdc9fb0932a5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.80"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007180"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_moadcoo_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_moadamp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGabcpp" metaid="_1afcd294-0571-4975-87e2-dc8f443379e6" name="L_arginine_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: 3.6.3.21</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1afcd294-0571-4975-87e2-dc8f443379e6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.21"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_arg_L_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2tex" metaid="_39f5e57f-2b12-494f-bd68-9ba86f019199" name="R_H2tex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: Spontaneous</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_39f5e57f-2b12-494f-bd68-9ba86f019199"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_2THZPSN2" metaid="cd8edc97-7777-49ff-8ec2-cdafe1b21523" name="R_2THZPSN2" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002960 AND XFCFBP8418_010710 AND XFCFBP8418_011380 AND XFCFBP8418_025440</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#cd8edc97-7777-49ff-8ec2-cdafe1b21523"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025440"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011380"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010710"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2c4mthzep_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTRLASE3" metaid="_134e14c8-23d7-4975-8993-627cad8b0328" name="nitrilase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004900</p> <p>SUBSYSTEM: Nitrile_degradation</p> <p>EC_NUMBER: 3.5.5.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_134e14c8-23d7-4975-8993-627cad8b0328"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.5.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004900"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> <speciesReference constant="true" species="M_acybut_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUMt2_2tex" metaid="e84f88d3-ed67-4fe6-8c89-1d05d753a009" name="R_FUMt2_2tex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e84f88d3-ed67-4fe6-8c89-1d05d753a009"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_fum_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_fum_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTRLASE2" metaid="a994ee3a-5c18-4224-b252-d544d7721451" name="nitrilase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004900</p> <p>SUBSYSTEM: Nitrile_degradation</p> <p>EC_NUMBER: 3.5.5.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a994ee3a-5c18-4224-b252-d544d7721451"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.5.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004900"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_aprop_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ILETA" metaid="_4faf7029-4b9a-45ef-995a-dd6b6cd7daa0" name="isoleucine_transaminase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_001240</p> <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> <p>EC_NUMBER: 2.6.1.42</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4faf7029-4b9a-45ef-995a-dd6b6cd7daa0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.42"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001240"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ile_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3mop_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUN" metaid="_6d5db020-42d2-4c67-b09a-71d599af89fd" name="glutaminase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026750</p> <p>SUBSYSTEM: Glutamate_Metabolism</p> <p>EC_NUMBER: 3.5.1.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6d5db020-42d2-4c67-b09a-71d599af89fd"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026750"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUR" metaid="ecfb0ef4-ec37-41aa-9ffd-d6a6e4f2054c" name="glutamate_racemase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ecfb0ef4-ec37-41aa-9ffd-d6a6e4f2054c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glu_D_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE3abcpp" metaid="d36a7413-0b8c-4b38-abc3-820c39ccf4ae" name="R_FE3abcpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: 3.6.3.30</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d36a7413-0b8c-4b38-abc3-820c39ccf4ae"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.30"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fe3_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fe3_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN120" metaid="_0ba1e8dc-1e0d-4dc0-ad46-1e4fdd620792" name="CDP_diacylglycerol_synthetase__n_C12_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.7.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0ba1e8dc-1e0d-4dc0-ad46-1e4fdd620792"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pa120_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cdpdddecg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NACtpp" metaid="ae1e97f9-8617-497c-ae71-24585acd3ce5" name="R_NACtpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ae1e97f9-8617-497c-ae71-24585acd3ce5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nac_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nac_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LIPOCT" metaid="bdab0b04-e8cb-4bab-8f54-163eae6288b3" name="Lipoyl_octanoyl__transferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_022350</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#bdab0b04-e8cb-4bab-8f54-163eae6288b3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022350"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ocACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_octapb_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SHCHF" metaid="d4619ccf-80f9-4cad-96ea-bba4caee5f43" name="R_SHCHF" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010970</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 4.99.1.4</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d4619ccf-80f9-4cad-96ea-bba4caee5f43"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.99.1.4"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010970"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_scl_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fe2_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_sheme_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_fe3_e" metaid="d2a448eb-c902-4e33-ab88-6e80ede7832f" name="R_EX_fe3_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d2a448eb-c902-4e33-ab88-6e80ede7832f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_fe3_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ILEabcpp" metaid="_1db2a1a5-3ad1-49be-b2f5-9426939530b0" name="L_isoleucine_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1db2a1a5-3ad1-49be-b2f5-9426939530b0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ile_L_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ile_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NADDP" metaid="_3755c964-c650-40a9-a331-572a12deb4d8" name="R_NADDP" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_012090</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 3.6.1.22</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3755c964-c650-40a9-a331-572a12deb4d8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.22"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012090"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_nmn_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDCPDPS" metaid="dcba839d-2519-4cb8-9aab-1b45abfea0b7" name="Undecaprenyl_diphosphate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024830</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.5.1.31</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#dcba839d-2519-4cb8-9aab-1b45abfea0b7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.31"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024830"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_frdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ipdp_c" stoichiometry="8"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_udcpdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="8"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NMNATr" metaid="_1536dc85-983a-4dc5-a7b2-1693baf7ee7f" name="nicotinamide_nucleotide_adenylyltransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_019740</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.7.7.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1536dc85-983a-4dc5-a7b2-1693baf7ee7f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019740"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nmn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYALDtpp" metaid="_3d01642d-709a-4a12-9b8e-5c4c7b9143ec" name="R_GLYALDtpp" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020710</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3d01642d-709a-4a12-9b8e-5c4c7b9143ec"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glyald_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glyald_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CS" metaid="_23d90c22-f4bc-4bde-8c29-ab8d669a9aed" name="citrate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002320</p> <p>SUBSYSTEM: Citric_Acid_Cycle</p> <p>EC_NUMBER: 2.3.3.16</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_23d90c22-f4bc-4bde-8c29-ab8d669a9aed"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.3.16"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002320"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cit_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GDDMR" metaid="c8ea31f2-689b-402d-8528-16afb300f073" name="R_GDDMR" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006450</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 1.1.1.281</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c8ea31f2-689b-402d-8528-16afb300f073"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.281"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006450"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gdp6dm_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gdp4d6dm_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ABTA" metaid="_3feec985-0dfd-47db-890f-ffdb7d9c4a21" name="R_ABTA" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003360</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 2.6.1.19</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3feec985-0dfd-47db-890f-ffdb7d9c4a21"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.19"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003360"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_4abut_c" stoichiometry="1"/> <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_sucsal_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUM" metaid="_01f69675-9e9e-403f-a07a-1fbb9a7f1344" name="fumarase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_002100 ) OR ( XFCFBP8418_016890 )</p> <p>SUBSYSTEM: Citric_Acid_Cycle</p> <p>EC_NUMBER: 4.2.1.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_01f69675-9e9e-403f-a07a-1fbb9a7f1344"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002100"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016890"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_mal_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TYRTRS" metaid="_68f26176-267c-4299-8ae1-e8ed7005c387" name="tyrosyl_tRNA_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015580</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 6.1.1.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_68f26176-267c-4299-8ae1-e8ed7005c387"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015580"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_tyr_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trnatyr_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_tyrtrna_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACGAMABCt" metaid="db998b9d-c4f8-49ab-bc81-335ce9c0c4e3" name="R_ACGAMABCt" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#db998b9d-c4f8-49ab-bc81-335ce9c0c4e3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acgam_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_acgam6p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHPPDA2" metaid="_397adf45-3110-49b9-ae89-2c10c38bdc95" name="R_DHPPDA2" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_009790</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 3.5.4.26</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_397adf45-3110-49b9-ae89-2c10c38bdc95"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.26"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009790"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_25drapp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_5apru_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADNK1" metaid="_70c5194d-2459-4c73-baaa-52095bab44ce" name="R_ADNK1" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026070</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.7.1.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_70c5194d-2459-4c73-baaa-52095bab44ce"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS180pp" metaid="_41e3f736-7f18-4ed2-882d-078fcd073cf4" name="cardiolipin_synthase__periplasmic__n_C18_0_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_41e3f736-7f18-4ed2-882d-078fcd073cf4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pg180_p" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_clpn180_p" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP161abcpp" metaid="_6b4db725-0f46-45cd-91a7-ff5e26647473" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C16_1__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6b4db725-0f46-45cd-91a7-ff5e26647473"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pgp161_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pgp161_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS180" metaid="_8292c076-d98f-4659-abf8-5aea04f19a2e" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C18_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.3.1.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8292c076-d98f-4659-abf8-5aea04f19a2e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_palmACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_3ooctdACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR4b" metaid="_1fce80bd-1ea0-4dbf-923e-87f0e18742da" name="R_RNDR4b" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_013020 AND XFCFBP8418_023110 AND XFCFBP8418_023120</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 1.17.4.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1fce80bd-1ea0-4dbf-923e-87f0e18742da"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013020"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dudp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS181" metaid="f6607936-32c2-4e46-ad0a-30d824da2f35" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C18_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.3.1.179</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f6607936-32c2-4e46-ad0a-30d824da2f35"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.179"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_hdeACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3ocvac11eACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_inost_e" metaid="_0aedf89d-8a96-4cfa-92a3-6eb5f2053277" name="R_EX_inost_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0aedf89d-8a96-4cfa-92a3-6eb5f2053277"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_inost_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MAN6PI" metaid="_7dbe2ce6-db32-4f7e-bc6e-b3f2ddf43e5c" name="mannose_6_phosphate_isomerase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026210</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 5.3.1.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7dbe2ce6-db32-4f7e-bc6e-b3f2ddf43e5c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026210"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_man6p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHAPT" metaid="_5dde2c9f-2b10-4b58-a131-233066c88570" name="R_DHAPT" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003570 AND XFCFBP8418_003580</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 2.7.1.121</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5dde2c9f-2b10-4b58-a131-233066c88570"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.121"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dha_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASADH" metaid="_5b379ec5-d580-42e2-b908-5cb20646ef45" name="R_ASADH" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003880</p> <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> <p>EC_NUMBER: 1.2.1.11</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5b379ec5-d580-42e2-b908-5cb20646ef45"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.11"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003880"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_4pasp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_aspsa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MALDt2_2tex" metaid="f545ce1c-e54a-4c5b-8a49-c502345c9345" name="R_MALDt2_2tex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f545ce1c-e54a-4c5b-8a49-c502345c9345"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_mal_D_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_mal_D_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MALCOAMT" metaid="_4f14dd11-4111-46fe-b081-74f31fa49336" name="Malonyl_CoA_methyltransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_000200 ) OR ( XFCFBP8418_001720 )</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.1.1.197</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4f14dd11-4111-46fe-b081-74f31fa49336"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.197"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001720"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000200"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_malcoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ahcys_c" stoichiometry="1"/> <speciesReference constant="true" species="M_malcoame_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PGtex" metaid="_44c99b45-18a0-45ae-8d1d-c1b1c42b96c8" name="glycerophoglycerol_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_44c99b45-18a0-45ae-8d1d-c1b1c42b96c8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_g3pg_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_g3pg_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DPR" metaid="_9a68ad4c-d4cd-4ce0-9f53-966e0013be3e" name="2_dehydropantoate_2_reductase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_017890</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.169</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9a68ad4c-d4cd-4ce0-9f53-966e0013be3e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.169"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2dhp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pant_R_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLU5K" metaid="b8b1436a-57d8-458d-b9e0-94f26f27e260" name="glutamate_5_kinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025230</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 2.7.2.11</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b8b1436a-57d8-458d-b9e0-94f26f27e260"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.2.11"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025230"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu5p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AIRC2r" metaid="_6645cf46-919f-486a-9823-6781d9cfbbb6" name="phosphoribosylaminoimidazole_carboxylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_013030</p> <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> <p>EC_NUMBER: 6.3.4.18</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6645cf46-919f-486a-9823-6781d9cfbbb6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.18"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013030"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_air_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hco3_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_5caiz_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ATHRDHr" metaid="_7e3a7053-fb8e-4b36-b54f-dd6fdb04058e" name="R_ATHRDHr" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015390</p> <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> <p>EC_NUMBER: 1.1.1.381</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7e3a7053-fb8e-4b36-b54f-dd6fdb04058e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.381"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015390"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_athr_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2aobut_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROt2rpp" metaid="_9bd00da5-d6af-4066-9645-33a888f9bbcd" name="L_proline_reversible_transport_via_proton_symport__periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9bd00da5-d6af-4066-9645-33a888f9bbcd"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pro_L_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GHMT2r" metaid="da8d0d51-de92-452f-a95b-e3db2099f067" name="glycine_hydroxymethyltransferase__reversible" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> <p>EC_NUMBER: 2.1.2.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#da8d0d51-de92-452f-a95b-e3db2099f067"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_QUIN2tpp" metaid="d71079b3-0b61-482c-80db-53375e0430ac" name="R_QUIN2tpp" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d71079b3-0b61-482c-80db-53375e0430ac"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_quin_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_quin_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SHSL1r" metaid="f530f847-db22-43d3-9d16-6d7eac17354a" name="R_SHSL1r" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010590</p> <p>SUBSYSTEM: Methionine_Metabolism</p> <p>EC_NUMBER: 2.5.1.48</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f530f847-db22-43d3-9d16-6d7eac17354a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.48"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010590"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_suchms_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cyst_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RBFK" metaid="_0821679d-8246-41fd-bba1-6ce3a40d8b18" name="riboflavin_kinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004690</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.7.1.26</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0821679d-8246-41fd-bba1-6ce3a40d8b18"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.26"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004690"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ribflv_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fmn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR3b" metaid="_43142d0a-9eef-49e5-b7f0-e37c0a16a8eb" name="R_RNDR3b" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_013020 AND XFCFBP8418_023110 AND XFCFBP8418_023120</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 1.17.4.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_43142d0a-9eef-49e5-b7f0-e37c0a16a8eb"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013020"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cdp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dcdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TMPPP" metaid="_0ec55137-23f5-4f3f-9112-d6bd2eafdea0" name="thiamine_phosphate_diphosphorylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_008540</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.5.1.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0ec55137-23f5-4f3f-9112-d6bd2eafdea0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008540"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_2mahmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_4mpetz_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thmmp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DSBAO1" metaid="_5c0b1182-02bb-4720-beb4-03400b842a82" name="DsbA_protein_reoxidation_reaction__aerobic_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_003290 AND XFCFBP8418_008810 ) OR ( XFCFBP8418_003300 AND XFCFBP8418_008810 )</p> <p>SUBSYSTEM: Protein_disulfide_bond_transfer</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5c0b1182-02bb-4720-beb4-03400b842a82"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008810"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003300"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008810"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003290"/> </fbc:and> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dsbard_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dsbaox_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_4abut_e" metaid="_0a49bcd6-eff9-41d0-bd80-27d644965d83" name="R_EX_4abut_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0a49bcd6-eff9-41d0-bd80-27d644965d83"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_4abut_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FCLT" metaid="_8eb1d4bb-b1c1-44fb-81f9-ebed8b74488d" name="Ferrochelatase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006790</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 4.99.1.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8eb1d4bb-b1c1-44fb-81f9-ebed8b74488d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.99.1.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006790"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ppp9_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fe2_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pheme_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HSK" metaid="_9940ff69-7b6c-4680-8a6c-988340fcd018" name="homoserine_kinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020370</p> <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> <p>EC_NUMBER: 2.7.1.39</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9940ff69-7b6c-4680-8a6c-988340fcd018"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.39"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020370"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_hom_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_phom_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRAr" metaid="_76b3b033-d489-453c-bb92-fa7bfd1b43ff" name="Threonine_Aldolase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> <p>EC_NUMBER: 4.1.2.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_76b3b033-d489-453c-bb92-fa7bfd1b43ff"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_thr_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acald_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADSL2r" metaid="dacd9565-cac8-43a7-b468-bae13439ab04" name="adenylosuccinate_lyase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002120</p> <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> <p>EC_NUMBER: 4.3.2.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#dacd9565-cac8-43a7-b468-bae13439ab04"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.2.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002120"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_25aics_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> <speciesReference constant="true" species="M_aicar_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PGabcpp" metaid="_44db3cb0-b678-4dc7-81ca-28d8e338ea64" name="sn_glycerol_3_phosphoglycerol_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_44db3cb0-b678-4dc7-81ca-28d8e338ea64"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_g3pg_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_g3pg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_O16A4COLIPAabctex" metaid="b12703fa-9481-407c-82ac-92105fd00866" name="R_O16A4COLIPAabctex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003500 AND XFCFBP8418_003510 AND XFCFBP8418_015320 AND XFCFBP8418_015330</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b12703fa-9481-407c-82ac-92105fd00866"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003510"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003500"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015330"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015320"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_OLPS_XF_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_OLPS_XF_e" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUtex" metaid="cc285548-4649-4d25-9a09-e6c71c2f1135" name="L_glutamate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#cc285548-4649-4d25-9a09-e6c71c2f1135"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glu_L_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROT_cp_LesA" metaid="c7216a2f-75d2-418a-8595-9227e9080418" name="R_PROT_cp_LesA" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002410 AND XFCFBP8418_002430 AND XFCFBP8418_002450 AND XFCFBP8418_002490 AND XFCFBP8418_002510 AND XFCFBP8418_007090 AND XFCFBP8418_007140 AND XFCFBP8418_008580 AND XFCFBP8418_009650 AND XFCFBP8418_014460</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c7216a2f-75d2-418a-8595-9227e9080418"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002490"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007090"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002430"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002510"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008580"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002410"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007140"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009650"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014460"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002450"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="601"/> <speciesReference constant="true" species="M_LesA_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="601"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pi_c" stoichiometry="601"/> <speciesReference constant="true" species="M_LesA_p" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="601"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR2b" metaid="_6e54d580-b45a-4013-a358-079027932d74" name="R_RNDR2b" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_013020 AND XFCFBP8418_023110 AND XFCFBP8418_023120</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 1.17.4.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6e54d580-b45a-4013-a358-079027932d74"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013020"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dgdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_pyr_e" metaid="_8633901e-e762-4406-8ebb-b58c3f6c6f92" name="R_EX_pyr_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8633901e-e762-4406-8ebb-b58c3f6c6f92"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_pyr_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS160" metaid="a3fabda9-649f-4736-b7fa-28241c5853c0" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C16_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.3.1.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a3fabda9-649f-4736-b7fa-28241c5853c0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_myrsACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3opalmACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DSERDHr" metaid="_59ad4187-4ef2-4171-90b9-234bbc54fcee" name="R_DSERDHr" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015390</p> <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> <p>EC_NUMBER: 1.1.1.276</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_59ad4187-4ef2-4171-90b9-234bbc54fcee"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.276"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015390"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ser_D_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2amsa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS161" metaid="d9fd717c-9da8-4cd7-b257-1e48b23ee048" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C16_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.3.1.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d9fd717c-9da8-4cd7-b257-1e48b23ee048"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_tdeACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_3ocpalm9eACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRATPP" metaid="_7bab06b3-5f10-46bc-8921-b52ca4efaa68" name="phosphoribosyl_ATP_pyrophosphatase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020260</p> <p>SUBSYSTEM: Histidine_Metabolism</p> <p>EC_NUMBER: 3.6.1.31</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7bab06b3-5f10-46bc-8921-b52ca4efaa68"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.31"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020260"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_prbatp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_prbamp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_URAt2pp" metaid="c689780f-6291-4a49-8606-befea4ef9449" name="R_URAt2pp" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c689780f-6291-4a49-8606-befea4ef9449"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ura_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ura_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GP4GH" metaid="_537a438f-16d9-4cc6-9519-85c84364ff69" name="Gp4G_hydrolase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_019500</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_537a438f-16d9-4cc6-9519-85c84364ff69"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019500"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gp4g_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_gdp_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPK2r" metaid="_0bae4037-a747-4a55-97f0-2d9c35812403" name="polyphosphate_kinase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_012370</p> <p>SUBSYSTEM: Oxidative_Phosphorylation</p> <p>EC_NUMBER: 2.7.4.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0bae4037-a747-4a55-97f0-2d9c35812403"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012370"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pppi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAPE" metaid="_29a03fd9-aefc-4f79-b029-e69b46c520e5" name="diaminopimelate_epimerase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002870</p> <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> <p>EC_NUMBER: 5.1.1.7</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_29a03fd9-aefc-4f79-b029-e69b46c520e5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.1.7"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002870"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_26dap_LL_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_26dap_M_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OAAtex" metaid="b07ccf1c-e5f0-4e1a-aec2-8e9ad696935f" name="R_OAAtex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b07ccf1c-e5f0-4e1a-aec2-8e9ad696935f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_oaa_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_oaa_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ORPT" metaid="f9ef6e07-c2be-48b1-a3a1-3bf83ffd1efd" name="orotate_phosphoribosyltransferase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015470</p> <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> <p>EC_NUMBER: 2.4.2.10</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f9ef6e07-c2be-48b1-a3a1-3bf83ffd1efd"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.10"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015470"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_orot5p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_orot_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROtex" metaid="_9d708f07-47a2-4900-8f78-559008fb3911" name="L_proline_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9d708f07-47a2-4900-8f78-559008fb3911"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pro_L_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pro_L_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE120abcpp" metaid="_3a7b34bd-9273-4389-9723-727fa652ce82" name="phosphatidylethanolamine_transport_via_ABC_system__n_C12_0__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3a7b34bd-9273-4389-9723-727fa652ce82"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pe120_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pe120_p" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP180pp" metaid="c35596c4-e315-4b33-a091-de5a0f92068b" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C18_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 3.1.3.27</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c35596c4-e315-4b33-a091-de5a0f92068b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> <speciesReference constant="true" species="M_pgp180_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> <speciesReference constant="true" species="M_pg180_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_mobd_e" metaid="_20930448-937b-4cf1-ab3f-ecc08d62f091" name="R_EX_mobd_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_20930448-937b-4cf1-ab3f-ecc08d62f091"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_mobd_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR1b" metaid="b9cad4e8-4536-4eec-8c2e-6d989419fe0e" name="R_RNDR1b" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_013020 AND XFCFBP8418_023110 AND XFCFBP8418_023120</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 1.17.4.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b9cad4e8-4536-4eec-8c2e-6d989419fe0e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013020"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UPPDC1" metaid="bbf72941-8f9c-476d-88dc-ce5e8f3cc3f2" name="uroporphyrinogen_decarboxylase__uroporphyrinogen_III_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004180</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 4.1.1.37</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#bbf72941-8f9c-476d-88dc-ce5e8f3cc3f2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.37"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004180"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_uppg3_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="4"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cpppg3_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="4"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PYRt2rpp" metaid="_67a005e1-64b1-49b1-a087-618c55348f69" name="pyruvate_reversible_transport_via_proton_symport__periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_67a005e1-64b1-49b1-a087-618c55348f69"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> <speciesReference constant="true" species="M_pyr_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_T2DECAI" metaid="_5f6dd7c4-e043-4833-ae2f-ccd001b942a8" name="trans_2_decenoyl_ACP_isomerase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006750</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5f6dd7c4-e043-4833-ae2f-ccd001b942a8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_tdec2eACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cdec3eACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADSL1r" metaid="c79adf30-efb3-4c5b-ab16-e56fe3a29df1" name="adenylsuccinate_lyase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002120</p> <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> <p>EC_NUMBER: 4.3.2.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c79adf30-efb3-4c5b-ab16-e56fe3a29df1"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.2.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002120"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dcamp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHNPA2" metaid="_9e213471-7d57-43b4-ad83-a49b7090064d" name="dihydroneopterin_aldolase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007450</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 4.1.2.25</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9e213471-7d57-43b4-ad83-a49b7090064d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.25"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007450"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dhnpt_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_6hmhpt_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gcald_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OMMBLHX" metaid="b915eb59-4fc6-4502-ab13-9ac3eb413803" name="2_Octaprenyl_3_methyl_6_methoxy_1_4_benzoquinol_hydroxylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010940</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b915eb59-4fc6-4502-ab13-9ac3eb413803"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010940"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_2ommbl_c" stoichiometry="1"/> <speciesReference constant="true" species="M_o2_c" stoichiometry="0.5"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_2omhmbl_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSSADS" metaid="_9d0218c9-f286-40a8-b0ed-f09b4a88786a" name="R_CYSSADS" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002960</p> <p>SUBSYSTEM: Cysteine_Metabolism</p> <p>EC_NUMBER: 4.1.1.12</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9d0218c9-f286-40a8-b0ed-f09b4a88786a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.12"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3sala_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_so2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MEOHtex" metaid="f8f0a2d0-bbae-4aa8-9861-728f3528ccc0" name="Methanol_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f8f0a2d0-bbae-4aa8-9861-728f3528ccc0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_meoh_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_meoh_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MG2tpp" metaid="_468c5216-dda7-4ea0-a1be-6d9beafa5192" name="magnesium___2__transport_in_via_diffusion" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010210</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_468c5216-dda7-4ea0-a1be-6d9beafa5192"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010210"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_mg2_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_mg2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE140abcpp" metaid="_1c8a405f-6f2b-4349-89a5-74b3a30b1631" name="phosphatidylethanolamine_transport_via_ABC_system__n_C14_0__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1c8a405f-6f2b-4349-89a5-74b3a30b1631"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pe140_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pe140_p" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HISTRS" metaid="cf58a71b-ee9b-4e1d-b6bf-7b0e5b537f32" name="Histidyl_tRNA_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020350</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 6.1.1.21</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#cf58a71b-ee9b-4e1d-b6bf-7b0e5b537f32"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.21"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020350"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_trnahis_c" stoichiometry="1"/> <speciesReference constant="true" species="M_his_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_histrna_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGDCpp" metaid="e5dcc1c1-e648-428d-86dd-7d5bb7df0e6e" name="R_ARGDCpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015380</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 4.1.1.19</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e5dcc1c1-e648-428d-86dd-7d5bb7df0e6e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.19"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015380"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> <speciesReference constant="true" species="M_arg_L_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_agm_p" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS140" metaid="f9183968-aad1-4479-871e-85f5ddcce669" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C14_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.3.1.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f9183968-aad1-4479-871e-85f5ddcce669"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ddcaACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_3omrsACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OPHHX" metaid="_3f44626a-4910-45ac-86fa-da92802e5d01" name="2_Octaprenylphenol_hydroxylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_017800</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3f44626a-4910-45ac-86fa-da92802e5d01"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017800"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_2oph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_o2_c" stoichiometry="0.5"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_2ohph_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS141" metaid="_0ec69bdf-88ce-465f-9218-2538ee9ad8d1" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C14_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.3.1.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0ec69bdf-88ce-465f-9218-2538ee9ad8d1"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cddec5eACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3ocmrs7eACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR180x" metaid="_3bfc5d63-2c65-4b18-acba-50fc84cb20b6" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C18_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 1.3.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3bfc5d63-2c65-4b18-acba-50fc84cb20b6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_toctd2eACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ocdcaACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KDOCT2" metaid="_3d706d9f-080e-4204-ae23-70f909a44e8b" name="3_deoxy_manno_octulosonate_cytidylyltransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_019240</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.7.7.38</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3d706d9f-080e-4204-ae23-70f909a44e8b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.38"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019240"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_kdo_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ckdo_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR2" metaid="_79aeb888-3830-43ed-9cc4-cc33e236b38e" name="ribonucleoside_diphosphate_reductase__GDP_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_023110 AND XFCFBP8418_023120 ) OR ( XFCFBP8418_013260 AND XFCFBP8418_023110 AND XFCFBP8418_023120 )</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 1.17.4.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_79aeb888-3830-43ed-9cc4-cc33e236b38e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> </fbc:and> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dgdp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR1" metaid="b3219740-d050-4774-a42b-f624af5ded79" name="ribonucleoside_diphosphate_reductase__ADP_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_023110 AND XFCFBP8418_023120 ) OR ( XFCFBP8418_013260 AND XFCFBP8418_023110 AND XFCFBP8418_023120 )</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 1.17.4.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b3219740-d050-4774-a42b-f624af5ded79"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> </fbc:and> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FMETTRS" metaid="a2feb2dc-03c1-4e58-b8cc-f958156cc5ef" name="Methionyl_tRNA_formyltransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_009950</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 2.1.2.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a2feb2dc-03c1-4e58-b8cc-f958156cc5ef"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009950"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_mettrna_c" stoichiometry="1"/> <speciesReference constant="true" species="M_10fthf_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fmettrna_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SPODM" metaid="_044de510-3507-4d74-8e62-1e1e87019bd4" name="superoxide_dismutase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_012590</p> <p>SUBSYSTEM: Superoxide_radicals_degradation</p> <p>EC_NUMBER: 1.15.1.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_044de510-3507-4d74-8e62-1e1e87019bd4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.15.1.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012590"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_o2s_c" stoichiometry="2"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD11" metaid="_6e7c9853-0f50-49ff-8fbb-bb6eb66501fe" name="5__nucleotidase__IMP_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.1.3.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6e7c9853-0f50-49ff-8fbb-bb6eb66501fe"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ins_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD10" metaid="e4bb43b8-b699-46df-9320-8e53cae7b56f" name="5__nucleotidase__XMP_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.1.3.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e4bb43b8-b699-46df-9320-8e53cae7b56f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_xmp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_xtsn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR4" metaid="_896b0e63-5634-4dcf-9958-674ac77696c7" name="ribonucleoside_diphosphate_reductase__UDP_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_023110 AND XFCFBP8418_023120 ) OR ( XFCFBP8418_013260 AND XFCFBP8418_023110 AND XFCFBP8418_023120 )</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 1.17.4.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_896b0e63-5634-4dcf-9958-674ac77696c7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> </fbc:and> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dudp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR3" metaid="cd2264e5-2cbb-4db6-ad9d-c07c43bcd14e" name="ribonucleoside_diphosphate_reductase__CDP_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_023110 AND XFCFBP8418_023120 ) OR ( XFCFBP8418_013260 AND XFCFBP8418_023110 AND XFCFBP8418_023120 )</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 1.17.4.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#cd2264e5-2cbb-4db6-ad9d-c07c43bcd14e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> </fbc:and> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cdp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dcdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD12" metaid="_5d330281-1b50-41c2-bc1c-73ce1a42e5e7" name="5__nucleotidase__dIMP_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.1.3.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5d330281-1b50-41c2-bc1c-73ce1a42e5e7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dimp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_din_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAAGDS" metaid="_03a62112-53cb-40a6-a5e6-9c48a58b81f1" name="UDP_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimelate_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011300</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.3.2.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_03a62112-53cb-40a6-a5e6-9c48a58b81f1"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011300"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_uamag_c" stoichiometry="1"/> <speciesReference constant="true" species="M_26dap_M_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ugmd_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDEP3pp" metaid="_48f0e7d9-7db2-4279-8c7e-bf92bf1db331" name="murein_D_D_endopeptidase__murein5px4p___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_48f0e7d9-7db2-4279-8c7e-bf92bf1db331"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_murein5px4p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_murein5p4p_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NH4tex" metaid="_248b94d3-106d-4470-8cca-3f6f228bbc8a" name="ammonia_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_248b94d3-106d-4470-8cca-3f6f228bbc8a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nh4_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nh4_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD121" metaid="_1d7ccf88-33dd-446c-bcea-f99ba152f541" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C12_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 4.2.1.59</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1d7ccf88-33dd-446c-bcea-f99ba152f541"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3hcddec5eACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_t3c5ddeceACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD120" metaid="_22084632-d9f6-40cb-b58f-2e5f42d8c8ad" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C12_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 4.2.1.59</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_22084632-d9f6-40cb-b58f-2e5f42d8c8ad"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3hddecACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_tddec2eACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_COBALT2tpp" metaid="_71a1ba76-5e3a-4113-a1dc-f3d98c0bbe94" name="cobalt_transport_in_via_permease__no_H__" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010210</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_71a1ba76-5e3a-4113-a1dc-f3d98c0bbe94"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010210"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cobalt2_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cobalt2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OROTt2_2pp" metaid="_9b8a138c-ca3d-4dcd-b4a2-4e283339ac74" name="Orotate_transport_via_proton_symport__2_H___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025480</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9b8a138c-ca3d-4dcd-b4a2-4e283339ac74"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025480"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_orot_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_orot_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MN2t3pp" metaid="_31e36b04-fa1f-40e4-9738-d89a6765dd6b" name="manganese__Mn_2__transport_out_via_proton_antiport__periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010570</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_31e36b04-fa1f-40e4-9738-d89a6765dd6b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010570"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_mn2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_mn2_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NADK" metaid="cd65e5b8-65f7-46b4-8e78-3659cbd30a6a" name="NAD_kinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_027970</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.7.9.23</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#cd65e5b8-65f7-46b4-8e78-3659cbd30a6a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.9.23"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027970"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METDtex" metaid="_4238a353-d6cb-4a6c-a9ac-5f3e78809b5e" name="R_METDtex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4238a353-d6cb-4a6c-a9ac-5f3e78809b5e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_met_D_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_met_D_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALATA_D2" metaid="_0a5e00e9-af40-4141-80c6-64e6817c3fbf" name="D_alanine_transaminase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0a5e00e9-af40-4141-80c6-64e6817c3fbf"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pydx5p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ala_D_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pyam5p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EPSsynthXF" metaid="_79e373ae-ac1a-4360-8bcb-89a7d0543645" name="R_EPSsynthXF" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021400 AND XFCFBP8418_021410 AND XFCFBP8418_021440 AND XFCFBP8418_021450 AND XFCFBP8418_021460</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_79e373ae-ac1a-4360-8bcb-89a7d0543645"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021410"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021400"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021450"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021460"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021440"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_udpgalur_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udpg_c" stoichiometry="2"/> <speciesReference constant="true" species="M_gdpmann_c" stoichiometry="1"/> <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_EPS_XF_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udp_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ORNTA" metaid="d5102a3c-3a3c-434a-94d0-8b96be75b928" name="ornithine_transaminase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003360</p> <p>SUBSYSTEM: Glutamate_Metabolism</p> <p>EC_NUMBER: 2.6.1.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d5102a3c-3a3c-434a-94d0-8b96be75b928"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003360"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_orn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glu5sa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PMANM" metaid="e7613bec-6717-43e5-9a04-e731c28b552d" name="phosphomannomutase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026200</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 5.4.2.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e7613bec-6717-43e5-9a04-e731c28b552d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.2.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026200"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_man1p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_man6p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SDPTA" metaid="c1b371a7-cf60-4264-b23e-ed786ad87c66" name="succinyldiaminopimelate_transaminase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003360</p> <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> <p>EC_NUMBER: 2.6.1.17</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c1b371a7-cf60-4264-b23e-ed786ad87c66"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.17"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003360"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_sl26da_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_sl2a6o_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MANptspp" metaid="f6e61095-8bae-4dd9-977a-512e79a6565e" name="R_MANptspp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f6e61095-8bae-4dd9-977a-512e79a6565e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_man_p" stoichiometry="1"/> <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_man6p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALAt2tex" metaid="_96deabb3-b15e-44dc-9b44-fe6777fd975d" name="R_ALAt2tex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_96deabb3-b15e-44dc-9b44-fe6777fd975d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ala_L_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ala_L_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR181x" metaid="_8bccbcf3-e7bf-473f-ae20-36fee6e62c8f" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C18_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 1.3.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8bccbcf3-e7bf-473f-ae20-36fee6e62c8f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_t3c11vaceACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_octeACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSTS" metaid="_61b6ac42-738f-4dbc-a0de-595026000983" name="R_CYSTS" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006490</p> <p>SUBSYSTEM: Cystein_Metabolism</p> <p>EC_NUMBER: 4.2.1.22</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_61b6ac42-738f-4dbc-a0de-595026000983"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.22"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006490"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_hcys_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cyst_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM4PCPpp" metaid="_2b90323d-3699-41a8-8135-de16322f7fe3" name="R_AGM4PCPpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: 3.4.17.14</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2b90323d-3699-41a8-8135-de16322f7fe3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.14"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> <speciesReference constant="true" species="M_anhgm3p_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP141abcpp" metaid="e4cac7b1-addf-4094-86dd-5626f799b1e7" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C14_1__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e4cac7b1-addf-4094-86dd-5626f799b1e7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pgp141_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pgp141_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MCOATA" metaid="_34b4986a-38cf-4f0e-b0ff-ac946164acd4" name="Malonyl_CoA_ACP_transacylase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_005920</p> <p>SUBSYSTEM: Membrane_Lipid_Metabolism</p> <p>EC_NUMBER: 2.3.1.39</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_34b4986a-38cf-4f0e-b0ff-ac946164acd4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.39"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005920"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_malcoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRMICI" metaid="_4a139dd6-6b1f-42a3-80fa-c1a652f92f40" name="1__5_phosphoribosyl__5___5_phosphoribosylamino_methylideneamino_imidazole_4_carboxamide_isomerase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020280</p> <p>SUBSYSTEM: Histidine_Metabolism</p> <p>EC_NUMBER: 5.3.1.16</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4a139dd6-6b1f-42a3-80fa-c1a652f92f40"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.16"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020280"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_prfp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_prlp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRFGS" metaid="ae9884a2-12e6-45c1-a0b3-eb9c374952fe" name="phosphoribosylformylglycinamidine_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003400</p> <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> <p>EC_NUMBER: 6.3.5.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ae9884a2-12e6-45c1-a0b3-eb9c374952fe"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.5.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003400"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fgam_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fpram_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UBQBM" metaid="f9dec702-3dc6-451a-aba0-3f7b5574765e" name="ubiquinone_biosynthesis_monooxygenase_Coq7" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002280</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.14.13.-</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f9dec702-3dc6-451a-aba0-3f7b5574765e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.14.13.-"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002280"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_2hpmhobq_c" stoichiometry="1"/> <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2hp6mobq_me_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHQD" metaid="_79202ee9-17eb-4a25-8b3d-0aba67bfb05b" name="3_dehydroquinate_dehydratase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_014540</p> <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> <p>EC_NUMBER: 4.2.1.10</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_79202ee9-17eb-4a25-8b3d-0aba67bfb05b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.10"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014540"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3dhq_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3dhsk_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDPGDC" metaid="_714296ef-25a8-4a7e-8a7d-9b785ef36d1b" name="R_UDPGDC" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006440</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.305</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_714296ef-25a8-4a7e-8a7d-9b785ef36d1b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.305"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006440"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udpglcur_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udpLa4o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALAR" metaid="f41507bb-f146-4e38-a834-64dc68ceed40" name="alanine_racemase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010700</p> <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> <p>EC_NUMBER: 5.1.1.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f41507bb-f146-4e38-a834-64dc68ceed40"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.1.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010700"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ala_D_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDCPPtppi" metaid="_43042d06-07b1-4ee3-9e5a-e3da8c996d33" name="undecaprenyl_phosphate_transport__cytoplasm_to_periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_43042d06-07b1-4ee3-9e5a-e3da8c996d33"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_udcpp_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_udcpp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP2" metaid="_00f0b404-4433-4991-b1ea-6ba5460196bd" name="R_NTPP2" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_015800 ) OR ( XFCFBP8418_023820 )</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.6.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_00f0b404-4433-4991-b1ea-6ba5460196bd"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023820"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gmp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP1" metaid="_6404b198-63b5-426c-a670-f1f20da40309" name="R_NTPP1" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_015800 ) OR ( XFCFBP8418_023820 )</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.6.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6404b198-63b5-426c-a670-f1f20da40309"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023820"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dgtp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dgmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHTNDA2" metaid="_1f4c0b90-0cb9-448e-ba07-43b65152c5a9" name="R_CHTNDA2" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021670</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 3.5.1.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1f4c0b90-0cb9-448e-ba07-43b65152c5a9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021670"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_chtbs_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_ac_c" stoichiometry="2"/> <speciesReference constant="true" species="M_chitos_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPTRS" metaid="cece8e95-5d53-4e5d-b26e-419e911c3979" name="Aspartyl_tRNA_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_016880</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 6.1.1.12</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#cece8e95-5d53-4e5d-b26e-419e911c3979"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.12"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016880"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trnaasp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_asptrna_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_glc_D_e" metaid="d8bc6d91-13e2-422c-ad0b-731ac272e030" name="R_EX_glc_D_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d8bc6d91-13e2-422c-ad0b-731ac272e030"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_glc_D_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRAI" metaid="_0b7be11a-f50b-43a9-88c3-8f0bf41f3c55" name="phosphoribosylanthranilate_isomerase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026720</p> <p>SUBSYSTEM: Tyrosine__tryptophan__and_phenylalanine_metabolism</p> <p>EC_NUMBER: 5.3.1.24</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0b7be11a-f50b-43a9-88c3-8f0bf41f3c55"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.24"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026720"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pran_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_2cpr5p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MSO3abcpp" metaid="_677c2f8c-7961-4be8-b1d7-5a0b60fb21a8" name="methanesulfonate_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_007680 ) OR ( XFCFBP8418_009840 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_677c2f8c-7961-4be8-b1d7-5a0b60fb21a8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009840"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_mso3_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_mso3_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHQS" metaid="c8451369-a3cb-451c-a1ab-747dc7433c89" name="3_dehydroquinate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004170</p> <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> <p>EC_NUMBER: 4.2.3.4</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c8451369-a3cb-451c-a1ab-747dc7433c89"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.3.4"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004170"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_2dda7p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_3dhq_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE140" metaid="cfb3384a-9b94-4fd2-ba77-9cd1ab312909" name="R_FACOAE140" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 3.1.2.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#cfb3384a-9b94-4fd2-ba77-9cd1ab312909"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_tdcoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ttdca_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_5DGLCNR" metaid="_8e3baeca-0b92-41fd-98d5-bf72e1a03b07" name="5_dehydro_D_gluconate_reductase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 1.1.1.69</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8e3baeca-0b92-41fd-98d5-bf72e1a03b07"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.69"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_5dglcn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glcn_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE141" metaid="_9af9b25b-0657-4114-b578-efca4a85f6a7" name="R_FACOAE141" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 3.1.2.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9af9b25b-0657-4114-b578-efca4a85f6a7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_tdecoa_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ttdcea_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NAMNPP" metaid="_829a24cf-0b33-4fb2-af68-514ec3e938ae" name="R_NAMNPP" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024030</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 6.3.4.21</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_829a24cf-0b33-4fb2-af68-514ec3e938ae"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.21"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024030"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nac_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nicrnt_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GDPTPDP" metaid="_01138718-ee8e-47e9-b1f4-f8562732613d" name="guanosine_3_diphosphate_5_triphosphate_3_diphosphatase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_008750</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 3.1.7.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_01138718-ee8e-47e9-b1f4-f8562732613d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.7.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008750"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gdptp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD100" metaid="d9b5e3b1-62f4-42c4-867c-c89d6e183f6b" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C10_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 4.2.1.59</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d9b5e3b1-62f4-42c4-867c-c89d6e183f6b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3hdecACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_tdec2eACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_COLIPAabcpp" metaid="_4af05ec1-1bed-4aba-a2cb-d0dbf9ec9c36" name="core_oligosaccharide_lipid_A_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4af05ec1-1bed-4aba-a2cb-d0dbf9ec9c36"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_core_kdo2lip6_XF_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_core_kdo2lip6_XF_p" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL161t2pp" metaid="a06a1dff-b332-4665-882d-c20f8bafdd8f" name="fatty_acid_CoA_ligase__hexadecenoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.2.1.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a06a1dff-b332-4665-882d-c20f8bafdd8f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hdcea_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hdcoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RIBtex" metaid="_4ddf94c1-6b92-40b8-aa6a-bdd0d4400dc5" name="R_RIBtex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4ddf94c1-6b92-40b8-aa6a-bdd0d4400dc5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_rib_D_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_rib_D_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_gln_L_e" metaid="_597c5adc-db49-44d2-94f1-b67ad04a0da4" name="R_EX_gln_L_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_597c5adc-db49-44d2-94f1-b67ad04a0da4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_gln_L_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OTOTt2_2tex" metaid="a210e18a-5994-4374-94bd-72287fee0ca0" name="R_OTOTt2_2tex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a210e18a-5994-4374-94bd-72287fee0ca0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_orot_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_orot_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_ADE" metaid="b3e3b004-8105-4516-a6e1-7f94dcafe766" name="R_DM_ADE" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b3e3b004-8105-4516-a6e1-7f94dcafe766"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ade_e" stoichiometry="1"/> </listOfReactants> <listOfProducts/> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OMPDC" metaid="d93dc4e1-edfc-4c32-85ab-7653f4ed523a" name="orotidine_5__phosphate_decarboxylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_014470</p> <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> <p>EC_NUMBER: 4.1.1.23</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d93dc4e1-edfc-4c32-85ab-7653f4ed523a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.23"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014470"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_orot5p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CCGS" metaid="aeefd093-9780-4f3a-a4bc-c4b1b159b5ce" name="7_cyano_7_carbaguanine_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_016870</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 6.3.4.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#aeefd093-9780-4f3a-a4bc-c4b1b159b5ce"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016870"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cdg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_preq0_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TSULtex" metaid="ec927e32-cf1d-4c73-918a-72f5029322db" name="thiosulfate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ec927e32-cf1d-4c73-918a-72f5029322db"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_tsul_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_tsul_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DATPHs" metaid="_2b1cac90-06fb-4bc4-b049-4dd1f620efa8" name="R_DATPHs" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: Spontaneous</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2b1cac90-06fb-4bc4-b049-4dd1f620efa8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_datp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ditp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PTRCt2pp" metaid="e78db6cd-0657-4fea-8f01-81c6ec2b22c9" name="putrescine_transport_in_via_proton_symport" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_020210 ) OR ( XFCFBP8418_020220 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e78db6cd-0657-4fea-8f01-81c6ec2b22c9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020210"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020220"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ptrc_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ptrc_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACMAMUT" metaid="e95f5e68-9ab6-4458-a480-f20dfe2db6e7" name="R_ACMAMUT" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021400</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.4.1.180</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e95f5e68-9ab6-4458-a480-f20dfe2db6e7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.1.180"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021400"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_unaga_c" stoichiometry="1"/> <speciesReference constant="true" species="M_uacmamu_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_unagamu_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EGMEACPR" metaid="_67a233e0-d4ee-4dc9-942d-b1e17c4c40db" name="Enoylglutaryl__ACP__methyl_ester_reductase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.3.1.10</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_67a233e0-d4ee-4dc9-942d-b1e17c4c40db"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.10"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_egmeACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gmeACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOXR2" metaid="_96cc1688-4359-4703-84b6-1435cb691796" name="L_methionine_R_sulfoxide_reductase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010720 AND XFCFBP8418_013260</p> <p>SUBSYSTEM: Methionine_Metabolism</p> <p>EC_NUMBER: 1.8.4.14</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_96cc1688-4359-4703-84b6-1435cb691796"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.4.14"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010720"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_metsox_R_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOXR1" metaid="_5df23b30-a3f6-4676-921e-54191df808b1" name="L_methionine_S_oxide_reductase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_000660 AND XFCFBP8418_013260</p> <p>SUBSYSTEM: Methionine_Metabolism</p> <p>EC_NUMBER: 1.8.4.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5df23b30-a3f6-4676-921e-54191df808b1"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.4.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000660"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_metsox_S_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EPStppXF" metaid="_5fb48694-ac9e-4ed6-b99d-173ee6449183" name="R_EPStppXF" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021420 AND XFCFBP8418_021460 AND XFCFBP8418_021480</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5fb48694-ac9e-4ed6-b99d-173ee6449183"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021420"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021480"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021460"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_EPS_XF_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_EPS_XF_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KDOPS" metaid="fafc6c96-1fa9-43ae-9ec8-ef503665762a" name="3_deoxy__D_manno_octulosonic__acid_8_phosphate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_022230</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.5.1.55</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#fafc6c96-1fa9-43ae-9ec8-ef503665762a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.55"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022230"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ara5p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_kdo8p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLTGY3pp" metaid="_8c2d34c8-0575-45ca-9afa-b2bb6aa92508" name="murein_lytic_transglycosylase__murein3p3p___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_003940 ) OR ( XFCFBP8418_019770 )</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8c2d34c8-0575-45ca-9afa-b2bb6aa92508"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003940"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019770"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_murein3p3p_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_anhgm3p_p" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_cit_e" metaid="_4102b033-7400-4144-a90c-dd4e3e8e846d" name="R_EX_cit_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4102b033-7400-4144-a90c-dd4e3e8e846d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_cit_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KDOPP" metaid="_3232385a-d5de-435f-91cd-5bc3226f132f" name="3_deoxy_manno_octulosonate_8_phosphatase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003480</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 3.1.3.45</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3232385a-d5de-435f-91cd-5bc3226f132f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.45"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003480"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_kdo8p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_kdo_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INS2D" metaid="_23902905-3c66-4f67-8f44-a07f6f2b556d" name="inositol_2_dehydrogenase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 1.1.1.18</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_23902905-3c66-4f67-8f44-a07f6f2b556d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.18"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_inost_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2ins_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR160x" metaid="fb6781bf-f459-4e4d-9c02-b1ab55166450" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C16_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 1.3.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#fb6781bf-f459-4e4d-9c02-b1ab55166450"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_tpalm2eACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_palmACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUMt2_2pp" metaid="_9bfdf378-c0f2-4e54-baac-18954903679e" name="Fumarate_transport_via_proton_symport__2_H___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025480</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9bfdf378-c0f2-4e54-baac-18954903679e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025480"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_fum_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTRLASE" metaid="_100a3131-464c-4fe3-8fbc-96b217be9163" name="nitrilase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004900</p> <p>SUBSYSTEM: Nitrile_degradation</p> <p>EC_NUMBER: 3.5.5.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_100a3131-464c-4fe3-8fbc-96b217be9163"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.5.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004900"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> <speciesReference constant="true" species="M_ind3acnl_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ind3ac_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Bztpp" metaid="_285c7944-ea46-46e8-a16c-61123969b4dc" name="R_Bztpp" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: Spontaneous</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_285c7944-ea46-46e8-a16c-61123969b4dc"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_bz_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_bz_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS60" metaid="_34b80282-f769-4dfd-ba18-8049c74ec799" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C6_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.3.1.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_34b80282-f769-4dfd-ba18-8049c74ec799"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_butACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3ohexACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE160" metaid="_72efae78-afaa-4b0f-9a5f-547547ffbf40" name="R_FACOAE160" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 3.1.2.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_72efae78-afaa-4b0f-9a5f-547547ffbf40"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pmtcoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_hdca_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ATPM" metaid="_4185d916-7cbb-46e0-adea-86c5eacb2919" name="R_ATPM" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Biomass_and_maintenance_functions</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4185d916-7cbb-46e0-adea-86c5eacb2919"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METabcpp" metaid="_00d49cea-7b15-48c0-bf8b-d807fb1545ac" name="L_methionine_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010500 AND XFCFBP8418_010510 AND XFCFBP8418_010520</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_00d49cea-7b15-48c0-bf8b-d807fb1545ac"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010500"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010510"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010520"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_met_L_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CA2tpp" metaid="_8a8e45aa-9098-4c26-a506-006e63380941" name="R_CA2tpp" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8a8e45aa-9098-4c26-a506-006e63380941"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ca2_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ca2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE161" metaid="_366b4b50-2bdd-4dbf-95b4-4182b08ec755" name="R_FACOAE161" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 3.1.2.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_366b4b50-2bdd-4dbf-95b4-4182b08ec755"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hdcoa_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_hdcea_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ME2" metaid="e38276c1-2ba0-4f9f-a4c3-3f01ca1a8cc3" name="malic_enzyme__NADP_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025470</p> <p>SUBSYSTEM: Anaplerotic_Reactions</p> <p>EC_NUMBER: 1.1.1.40</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e38276c1-2ba0-4f9f-a4c3-3f01ca1a8cc3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.40"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025470"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_mal_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SERabcpp" metaid="_9dd1c7b0-5fe9-488f-895a-52c4f7706186" name="R_SERabcpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9dd1c7b0-5fe9-488f-895a-52c4f7706186"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ser_L_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHAD2" metaid="b47e0de9-8e54-4c25-9acb-8fa599657aa4" name="Dihydroxy_acid_dehydratase__2_3_dihydroxy_3_methylpentanoate_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_014980</p> <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> <p>EC_NUMBER: 4.2.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b47e0de9-8e54-4c25-9acb-8fa599657aa4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014980"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_23dhmp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_3mop_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UPP3S" metaid="_0b5f9b39-03a1-424b-a3d8-378a01607d24" name="uroporphyrinogen_III_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_018150</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 4.2.1.75</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0b5f9b39-03a1-424b-a3d8-378a01607d24"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.75"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018150"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_hmbil_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_uppg3_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FLVR" metaid="_323efc0c-f6dc-4c47-9449-08a6f6e35350" name="R_FLVR" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002700 AND XFCFBP8418_002710</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.5.1.30</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_323efc0c-f6dc-4c47-9449-08a6f6e35350"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.30"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002710"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002700"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ribflv_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_rbflvrd_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHAD1" metaid="_77cebed7-605b-47bd-a764-4b13caba5e3c" name="dihydroxy_acid_dehydratase__2_3_dihydroxy_3_methylbutanoate_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_014980</p> <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> <p>EC_NUMBER: 4.2.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_77cebed7-605b-47bd-a764-4b13caba5e3c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014980"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_23dhmb_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3mob_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NADS2" metaid="_99c270f2-750c-4259-b953-d14e2c9425e3" name="NAD_synthase__glutamine_hydrolysing_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_000890</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 6.3.5.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_99c270f2-750c-4259-b953-d14e2c9425e3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.5.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dnad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SPS" metaid="_51b0db8a-aa4b-4a35-a77b-266a4ff17bfe" name="R_SPS" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010390</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 2.4.1.14</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_51b0db8a-aa4b-4a35-a77b-266a4ff17bfe"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.1.14"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010390"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udpg_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_suc6p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SEAHCYSHYD" metaid="_1c78443e-bf0c-4b1f-a8cb-2c48272a0288" name="Se_Adenosylselenohomocysteine_hydrolase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024950</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 3.3.1.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1c78443e-bf0c-4b1f-a8cb-2c48272a0288"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.3.1.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024950"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_seahcys_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_selhcys_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_U23GAATXF" metaid="_5ed5820f-384c-4032-a184-2e2bb929b8b9" name="R_U23GAATXF" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024880</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.3.1.191</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5ed5820f-384c-4032-a184-2e2bb929b8b9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.191"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024880"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3hddecACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_u3hga_XF_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_u23ga_XF_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDH" metaid="e8b66e0a-dc88-46b6-b724-c95e46904c14" name="malate_dehydrogenase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023000</p> <p>SUBSYSTEM: Citric_Acid_Cycle</p> <p>EC_NUMBER: 1.1.1.37</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e8b66e0a-dc88-46b6-b724-c95e46904c14"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.37"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023000"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_mal_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDSKXF" metaid="e05c0ff9-f3ee-44e4-ae6c-5a8af1fcdd02" name="R_TDSKXF" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024520</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.7.1.130</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e05c0ff9-f3ee-44e4-ae6c-5a8af1fcdd02"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.130"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024520"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_lipidAds_XF_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_lipidA_XF_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DPCOAK" metaid="_72098093-e1d9-4f34-a7c1-7fa433fa2788" name="dephospho_CoA_kinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011870</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.7.1.24</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_72098093-e1d9-4f34-a7c1-7fa433fa2788"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.24"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011870"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dpcoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLTN2pp" metaid="_3a2cf021-2280-4af5-845b-33197249f1e9" name="gluconolactonase__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_022170</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 3.1.1.17</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3a2cf021-2280-4af5-845b-33197249f1e9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.1.17"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022170"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_g15l_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glcn_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRabcpp" metaid="d6621e0d-c54a-4e88-9392-506216b82986" name="R_THRabcpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d6621e0d-c54a-4e88-9392-506216b82986"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_thr_L_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thr_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYC2Pabcpp" metaid="d2c55c67-7451-45ff-b341-7488e1a4909a" name="sn_Glycerol_2_phosphate_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d2c55c67-7451-45ff-b341-7488e1a4909a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc2p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc2p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSSr2" metaid="_36a33785-355e-44d9-b292-1c881970cfcb" name="R_CYSSr2" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_006490 ) OR ( XFCFBP8418_010590 ) OR ( XFCFBP8418_010980 )</p> <p>SUBSYSTEM: Cystein_Metabolism</p> <p>EC_NUMBER: 2.5.1.47</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_36a33785-355e-44d9-b292-1c881970cfcb"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.47"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010590"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010980"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006490"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2s_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acser_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPA2" metaid="_7faf16e3-0feb-400d-8cdd-1c9c8f111457" name="inorganic_triphosphatase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_010630 ) OR ( XFCFBP8418_012360 )</p> <p>SUBSYSTEM: Anaplerotic_Reactions</p> <p>EC_NUMBER: 3.6.1.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7faf16e3-0feb-400d-8cdd-1c9c8f111457"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012360"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pppi_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_COLIPAabctex" metaid="_02c0cfcc-783a-4ca4-8d3e-31820d1f8dd9" name="R_COLIPAabctex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003500 AND XFCFBP8418_003510 AND XFCFBP8418_015320 AND XFCFBP8418_015330</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_02c0cfcc-783a-4ca4-8d3e-31820d1f8dd9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003510"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003500"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015330"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015320"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_core_kdo2lip6_XF_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_core_kdo2lip6_XF_e" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DMATT" metaid="_2aa97013-926a-4b5f-9998-5ed411e27b82" name="dimethylallyltranstransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005980</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.5.1.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2aa97013-926a-4b5f-9998-5ed411e27b82"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005980"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dmpp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ipdp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_grdp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPt2_3pp" metaid="c4005074-397f-4200-9656-c1c1ff3a45de" name="R_ASPt2_3pp" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c4005074-397f-4200-9656-c1c1ff3a45de"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> <speciesReference constant="true" species="M_asp_L_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSTRS" metaid="c903eca2-cd93-4a27-b834-d0044c22820c" name="Cysteinyl_tRNA_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025320</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 6.1.1.16</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c903eca2-cd93-4a27-b834-d0044c22820c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.16"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025320"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_trnacys_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cystrna_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPGPPDP" metaid="_5e5254d2-8d42-429d-94f9-fac11e594eef" name="guanosine_3__5__bis_diphosphate__3__diphosphatase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_008750</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 3.1.7.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5e5254d2-8d42-429d-94f9-fac11e594eef"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.7.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008750"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ppgpp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR161x" metaid="_3766821c-aafe-44f0-bfee-3a2b6449de7f" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C16_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 1.3.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3766821c-aafe-44f0-bfee-3a2b6449de7f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_t3c9palmeACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hdeACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_pi_e" metaid="_572cf404-6cb2-432d-9834-ea31cca085e0" name="R_EX_pi_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_572cf404-6cb2-432d-9834-ea31cca085e0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_pi_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RFAMPtpp" metaid="d8ed4b2f-81a6-4b6c-bb5e-dbdf61b056f3" name="Rifampin_transport_via_TolC_system" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d8ed4b2f-81a6-4b6c-bb5e-dbdf61b056f3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_rfamp_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_rfamp_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK180" metaid="_68cf3dab-f648-4345-ad8b-80f10c25045f" name="diacylglycerol_kinase__n_C18_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.1.107</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_68cf3dab-f648-4345-ad8b-80f10c25045f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_12dgr180_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pa180_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CITt10" metaid="c5c7be53-9be9-4db8-bea3-ef614b2faa48" name="R_CITt10" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025570</p> <p>SUBSYSTEM: Transport</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c5c7be53-9be9-4db8-bea3-ef614b2faa48"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025570"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cit_e" stoichiometry="1"/> <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> <speciesReference constant="true" species="M_mg2_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cit_c" stoichiometry="1"/> <speciesReference constant="true" species="M_mg2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK181" metaid="_29e19ab5-e127-4ed0-a7bc-0a8d226d4b3e" name="diacylglycerol_kinase__n_C18_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.1.107</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_29e19ab5-e127-4ed0-a7bc-0a8d226d4b3e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_12dgr181_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pa181_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GUAPRT" metaid="_8757a5bb-8bc0-4c66-8411-7747b3c46cad" name="guanine_phosphoribosyltransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021340</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.4.2.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8757a5bb-8bc0-4c66-8411-7747b3c46cad"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021340"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gua_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gmp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G6PDA" metaid="_55f550d4-f869-44f9-a823-a6eb46a855aa" name="R_G6PDA" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_55f550d4-f869-44f9-a823-a6eb46a855aa"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gam6p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CO2tpp" metaid="_592d5d7c-c23c-49c8-af79-69a9a21a2fda" name="CO2_transporter_via_diffusion__periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_592d5d7c-c23c-49c8-af79-69a9a21a2fda"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_co2_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IMPC" metaid="_7d0bf977-e0f9-4ab5-af73-71af1b9a3d62" name="IMP_cyclohydrolase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_001030</p> <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> <p>EC_NUMBER: 3.5.4.10</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7d0bf977-e0f9-4ab5-af73-71af1b9a3d62"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.10"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001030"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_fprica_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IMPD" metaid="_72dca34a-c389-4260-9c38-045ec53ce65b" name="IMP_dehydrogenase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004780</p> <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.205</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_72dca34a-c389-4260-9c38-045ec53ce65b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.205"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004780"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_xmp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR120tipp" metaid="_2f365b72-eab7-4293-8e61-d3977b9fa9bb" name="R_12DGR120tipp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2f365b72-eab7-4293-8e61-d3977b9fa9bb"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_12dgr120_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_12dgr120_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MCTP1App" metaid="_1a4b0402-ae16-41d7-98d1-c957b449ea7f" name="murein_crosslinking_transpeptidase_1A__A2pm__D_ala___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004370 ) OR ( XFCFBP8418_008630 ) OR ( XFCFBP8418_010420 ) OR ( XFCFBP8418_011310 )</p> <p>SUBSYSTEM: Murein_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1a4b0402-ae16-41d7-98d1-c957b449ea7f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008630"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010420"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004370"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011310"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_murein5px4p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTP5" metaid="b143a1d1-0d57-43a7-85d4-71709412e774" name="R_NTP5" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006890</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.6.1.15</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b143a1d1-0d57-43a7-85d4-71709412e774"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.15"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cdp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHDPRy" metaid="_77a79940-cd78-46f6-ab2d-c08956d165d6" name="dihydrodipicolinate_reductase__NADPH_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023980</p> <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> <p>EC_NUMBER: 1.17.1.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_77a79940-cd78-46f6-ab2d-c08956d165d6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.1.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023980"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_23dhdp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thdp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SUCD1" metaid="_9a77c6f3-76f5-4645-8c68-52b4ee104b38" name="succinate_dehydrogenase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024610 AND XFCFBP8418_024620 AND XFCFBP8418_024640</p> <p>SUBSYSTEM: Citric_Acid_Cycle</p> <p>EC_NUMBER: 1.3.99.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9a77c6f3-76f5-4645-8c68-52b4ee104b38"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.99.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024610"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024620"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024640"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HISTP" metaid="b1733f22-e0c4-4eb7-96f9-649bb21770c6" name="histidinol_phosphatase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020300</p> <p>SUBSYSTEM: Histidine_Metabolism</p> <p>EC_NUMBER: 3.1.3.15</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b1733f22-e0c4-4eb7-96f9-649bb21770c6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.15"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020300"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_hisp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_histd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NMNDA" metaid="_61a7656c-7c46-4733-b4bd-1793d3d8fb5c" name="R_NMNDA" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_014880</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 3.5.1.42</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_61a7656c-7c46-4733-b4bd-1793d3d8fb5c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.42"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014880"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nmn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nicrnt_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTP1" metaid="d3528cbd-6c40-449d-bba4-dd0cd8970553" name="R_NTP1" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006890</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.6.1.15</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d3528cbd-6c40-449d-bba4-dd0cd8970553"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.15"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE180" metaid="ada0daac-03d6-4b7a-9282-497bb1c97f15" name="R_FACOAE180" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 3.1.2.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ada0daac-03d6-4b7a-9282-497bb1c97f15"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_stcoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ocdca_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XF_Biomass" metaid="_7225f85e-e5f6-4220-ad18-5b756a79b0ba" name="R_XF_Biomass" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Biomass_and_maintenance_functions</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7225f85e-e5f6-4220-ad18-5b756a79b0ba"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pe181_c" stoichiometry="0.007742407"/> <speciesReference constant="true" species="M_q8h2_c" stoichiometry="0.000249533"/> <speciesReference constant="true" species="M_thf_c" stoichiometry="0.000249533"/> <speciesReference constant="true" species="M_pe160_c" stoichiometry="0.019313938"/> <speciesReference constant="true" species="M_mobd_c" stoichiometry="7.37685E-6"/> <speciesReference constant="true" species="M_spmd_c" stoichiometry="0.007535445"/> <speciesReference constant="true" species="M_pe160_p" stoichiometry="0.049664413"/> <speciesReference constant="true" species="M_pe181_p" stoichiometry="0.019909046"/> <speciesReference constant="true" species="M_ni2_c" stoichiometry="0.000343024"/> <speciesReference constant="true" species="M_thrtrna_c" stoichiometry="0.248213969"/> <speciesReference constant="true" species="M_clpn160_p" stoichiometry="0.004598497"/> <speciesReference constant="true" species="M_gthrd_c" stoichiometry="0.0002495333"/> <speciesReference constant="true" species="M_murein3p3p_p" stoichiometry="0.001503009"/> <speciesReference constant="true" species="M_chor_c" stoichiometry="0.000249533"/> <speciesReference constant="true" species="M_leutrna_c" stoichiometry="0.440920172"/> <speciesReference constant="true" species="M_fad_c" stoichiometry="0.000249533"/> <speciesReference constant="true" species="M_lipopb_c" stoichiometry="3.35193E-6"/> <speciesReference constant="true" species="M_clpn181_p" stoichiometry="0.001843406"/> <speciesReference constant="true" species="M_murein4p4p_p" stoichiometry="0.006012037"/> <speciesReference constant="true" species="M_10fthf_c" stoichiometry="0.000249533"/> <speciesReference constant="true" species="M_asptrna_c" stoichiometry="0.236169831"/> <speciesReference constant="true" species="M_glutrna_c" stoichiometry="0.257639815"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="0.00018715"/> <speciesReference constant="true" species="M_dgtp_c" stoichiometry="0.03649201"/> <speciesReference constant="true" species="M_cobalt2_c" stoichiometry="2.67411E-5"/> <speciesReference constant="true" species="M_pydx5p_c" stoichiometry="0.000249533"/> <speciesReference constant="true" species="M_asntrna_c" stoichiometry="0.236169831"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="50.119554117"/> <speciesReference constant="true" species="M_glntrna_c" stoichiometry="0.257639815"/> <speciesReference constant="true" species="M_phetrna_c" stoichiometry="0.181185724"/> <speciesReference constant="true" species="M_cystrna_c" stoichiometry="0.089545546"/> <speciesReference constant="true" species="M_nadh_c" stoichiometry="4.99065E-5"/> <speciesReference constant="true" species="M_pg160_c" stoichiometry="0.008913919"/> <speciesReference constant="true" species="M_pg181_c" stoichiometry="0.003573336"/> <speciesReference constant="true" species="M_fe2_c" stoichiometry="0.007137104"/> <speciesReference constant="true" species="M_so4_c" stoichiometry="0.004610532"/> <speciesReference constant="true" species="M_mlthf_c" stoichiometry="0.000249533"/> <speciesReference constant="true" species="M_nadp_c" stoichiometry="0.000124766"/> <speciesReference constant="true" species="M_valtrna_c" stoichiometry="0.414213606"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="0.000374299"/> <speciesReference constant="true" species="M_murein4px4p_p" stoichiometry="0.006087187"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="0.013831597"/> <speciesReference constant="true" species="M_zn2_c" stoichiometry="0.000362388"/> <speciesReference constant="true" 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species="M_thmpp_c" stoichiometry="0.000249533"/> <speciesReference constant="true" species="M_protrna_c" stoichiometry="0.216270821"/> <speciesReference constant="true" species="M_amet_c" stoichiometry="0.000249533"/> <speciesReference constant="true" species="M_sertrna_c" stoichiometry="0.211034239"/> <speciesReference constant="true" species="M_pe161_p" stoichiometry="0.038627877"/> <speciesReference constant="true" species="M_datp_c" stoichiometry="0.032752791"/> <speciesReference constant="true" species="M_ctp_c" stoichiometry="0.135598794"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="0.001996262"/> <speciesReference constant="true" species="M_OLPS_XF_p" stoichiometry="9.503875E-5"/> <speciesReference constant="true" species="M_alatrna_c" stoichiometry="0.502711835"/> <speciesReference constant="true" species="M_iletrna_c" stoichiometry="0.284346382"/> <speciesReference constant="true" species="M_lystrna_c" stoichiometry="0.33618854"/> <speciesReference constant="true" species="M_succoa_c" stoichiometry="0.000109794"/> <speciesReference constant="true" species="M_tyrtrna_c" stoichiometry="0.135103806"/> <speciesReference constant="true" species="M_clpn161_p" stoichiometry="0.003576609"/> <speciesReference constant="true" species="M_utp_c" stoichiometry="0.124906971"/> <speciesReference constant="true" species="M_ribflv_c" stoichiometry="0.000249533"/> <speciesReference constant="true" species="M_dctp_c" stoichiometry="0.03649201"/> <speciesReference constant="true" species="M_pg161_c" stoichiometry="0.006933048"/> <speciesReference constant="true" species="M_ptrc_c" stoichiometry="0.037173471"/> <speciesReference constant="true" species="M_murein3px4p_p" stoichiometry="0.000676354"/> <speciesReference constant="true" species="M_gtp_c" stoichiometry="0.146535029"/> <speciesReference constant="true" species="M_trptrna_c" stoichiometry="0.055507765"/> <speciesReference constant="true" species="M_mn2_c" stoichiometry="0.000734919"/> <speciesReference constant="true" species="M_fe3_c" stoichiometry="0.008298958"/> <speciesReference constant="true" species="M_pheme_c" stoichiometry="0.000249533"/> <speciesReference constant="true" species="M_5mthf_c" stoichiometry="0.000249533"/> <speciesReference constant="true" species="M_cl_c" stoichiometry="0.005532639"/> <speciesReference constant="true" species="M_k_c" stoichiometry="0.207473951"/> <speciesReference constant="true" species="M_argtrna_c" stoichiometry="0.289582963"/> <speciesReference constant="true" species="M_2fe2s_c" stoichiometry="2.76632E-5"/> <speciesReference constant="true" species="M_sheme_c" stoichiometry="0.000249533"/> <speciesReference constant="true" species="M_cu2_c" stoichiometry="0.000753361"/> <speciesReference constant="true" species="M_malcoa_c" stoichiometry="3.49346E-5"/> <speciesReference constant="true" species="M_pg161_p" stoichiometry="0.005942602"/> <speciesReference constant="true" species="M_ca2_c" stoichiometry="0.005532639"/> <speciesReference constant="true" species="M_murein4px4px4p_p" stoichiometry="0.000751505"/> <speciesReference constant="true" species="M_mettrna_c" stoichiometry="0.150289892"/> <speciesReference constant="true" species="M_histrna_c" stoichiometry="0.092687495"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_trnahis_c" stoichiometry="0.092687495"/> <speciesReference constant="true" species="M_trnaile_c" stoichiometry="0.284346382"/> <speciesReference constant="true" species="M_trnathr_c" stoichiometry="0.248213969"/> <speciesReference constant="true" species="M_trnamet_c" stoichiometry="0.150289892"/> <speciesReference constant="true" species="M_trnaser_c" stoichiometry="0.211034239"/> <speciesReference constant="true" species="M_trnaasp_c" stoichiometry="0.236169831"/> <speciesReference constant="true" species="M_trnatrp_c" stoichiometry="0.055507765"/> <speciesReference constant="true" species="M_trnaasn_c" stoichiometry="0.236169831"/> <speciesReference constant="true" species="M_trnatyr_c" stoichiometry="0.135103806"/> <speciesReference constant="true" species="M_trnaleu_c" stoichiometry="0.440920172"/> <speciesReference constant="true" species="M_trnalys_c" stoichiometry="0.33618854"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="50"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="0.6650845"/> <speciesReference constant="true" species="M_trnaarg_c" stoichiometry="0.289582963"/> <speciesReference constant="true" species="M_trnaala_c" stoichiometry="0.502711835"/> <speciesReference constant="true" species="M_BIOMASS_XF_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trnapro_c" stoichiometry="0.216270821"/> <speciesReference constant="true" species="M_trnacys_c" stoichiometry="0.089545546"/> <speciesReference constant="true" species="M_trnagln_c" stoichiometry="0.257639815"/> <speciesReference constant="true" species="M_trnaphe_c" stoichiometry="0.181185724"/> <speciesReference constant="true" species="M_trnagly_c" stoichiometry="0.257639815"/> <speciesReference constant="true" species="M_trnaval_c" stoichiometry="0.414213606"/> <speciesReference constant="true" species="M_h_c" stoichiometry="50"/> <speciesReference constant="true" species="M_trnaglu_c" stoichiometry="0.257639815"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="50"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTP3" metaid="a3a03ffb-6814-4b72-b7a4-725dbf6f2e0b" name="R_NTP3" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006890</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.6.1.15</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a3a03ffb-6814-4b72-b7a4-725dbf6f2e0b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.15"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GARFT" metaid="_0c8663e6-6905-42bb-a508-820611839b50" name="phosphoribosylglycinamide_formyltransferase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006660</p> <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> <p>EC_NUMBER: 2.1.2.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0c8663e6-6905-42bb-a508-820611839b50"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006660"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_10fthf_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gar_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_fgam_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE181" metaid="_4e8d1c7d-c92c-4e77-a531-effa1667dac1" name="R_FACOAE181" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 3.1.2.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4e8d1c7d-c92c-4e77-a531-effa1667dac1"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_odecoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ocdcea_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_4HTHRS" metaid="b2cafea3-8726-4784-a4a2-48fa2a8aac8c" name="R_4HTHRS" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020360</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 4.2.3.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b2cafea3-8726-4784-a4a2-48fa2a8aac8c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.3.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020360"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_phthr_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_4hthr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS80" metaid="ada9e98b-8a39-4be5-b056-306a508a168b" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C8_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.3.1.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ada9e98b-8a39-4be5-b056-306a508a168b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hexACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3ooctACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2Otex" metaid="_2be83b09-483b-4a46-9dd0-31a07515d995" name="H2O_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2be83b09-483b-4a46-9dd0-31a07515d995"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_ac_e" metaid="_7ec6edd5-b5d3-48a6-9815-9a46c1f4fcc0" name="R_EX_ac_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7ec6edd5-b5d3-48a6-9815-9a46c1f4fcc0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_ac_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPCTn" metaid="_108332eb-3f81-4162-b8e3-1bcd0dc6caa3" name="R_ASPCTn" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_020390 ) OR ( XFCFBP8418_020390 )</p> <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> <p>EC_NUMBER: 2.1.3.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_108332eb-3f81-4162-b8e3-1bcd0dc6caa3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.3.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020390"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020390"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cbp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cbasp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HISTD" metaid="b55307a6-0e24-4c04-a18a-50fb06f80c9e" name="histidinol_dehydrogenase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020320</p> <p>SUBSYSTEM: Histidine_Metabolism</p> <p>EC_NUMBER: 1.1.1.23</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b55307a6-0e24-4c04-a18a-50fb06f80c9e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.23"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020320"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_histd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadh_c" stoichiometry="2"/> <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> <speciesReference constant="true" species="M_his_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NO3abcpp" metaid="_9522d0b7-f772-47d2-a160-5075d1284f88" name="Nitrate_ABC_transport" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007680</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: 3.6.3.26</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9522d0b7-f772-47d2-a160-5075d1284f88"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.26"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_no3_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_no3_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HDCEAtexi" metaid="_23f15e46-b806-4dd5-8ede-cad6055826b4" name="R_HDCEAtexi" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_23f15e46-b806-4dd5-8ede-cad6055826b4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_hdcea_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_hdcea_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PYNP2r" metaid="d6acaab4-06bd-4525-97c8-5c45785d9e5e" name="pyrimidine_nucleoside_phosphorylase__uracil_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.4.2.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d6acaab4-06bd-4525-97c8-5c45785d9e5e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_uri_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ura_c" stoichiometry="1"/> <speciesReference constant="true" species="M_r1p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METOX2s" metaid="_3599ab7d-5ca1-4f48-a7d6-a92fe92064c9" name="methionine_oxidation_2__spontaneous_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: Spontaneous</p> <p>SUBSYSTEM: Methionine_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3599ab7d-5ca1-4f48-a7d6-a92fe92064c9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_metsox_R_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IGPDH" metaid="faddba79-b4a3-4926-bce0-a53eb0bca6b4" name="imidazoleglycerol_phosphate_dehydratase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020300</p> <p>SUBSYSTEM: Histidine_Metabolism</p> <p>EC_NUMBER: 4.2.1.19</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#faddba79-b4a3-4926-bce0-a53eb0bca6b4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.19"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020300"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_eig3p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_imacp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP8" metaid="c6e6c163-fb35-4065-9483-b861979d1fb8" name="R_NTPP8" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.6.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c6e6c163-fb35-4065-9483-b861979d1fb8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP7" metaid="_046bdf28-c0e5-4faf-83a5-02f473f3fdb9" name="R_NTPP7" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.6.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_046bdf28-c0e5-4faf-83a5-02f473f3fdb9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dttp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dtmp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_s_e" metaid="d58ebf7a-8409-4264-993d-2093e0bf8638" name="R_EX_s_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d58ebf7a-8409-4264-993d-2093e0bf8638"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_s_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP9" metaid="_191b40e0-ca4d-44a4-9c02-9d8ce4932b14" name="Nucleoside_triphosphate_pyrophosphorylase__itp_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002620</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.6.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_191b40e0-ca4d-44a4-9c02-9d8ce4932b14"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002620"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_itp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP4" metaid="_7ab016f3-69ae-4eed-8885-9d94da6b251a" name="Nucleoside_triphosphate_pyrophosphorylase__ctp_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.6.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7ab016f3-69ae-4eed-8885-9d94da6b251a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LACZpp" metaid="e5b8a7d7-1c63-468e-a49a-389a1d5f2d2d" name="R_LACZpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007430</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 3.2.1.108</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e5b8a7d7-1c63-468e-a49a-389a1d5f2d2d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.108"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007430"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_lcts_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gal_p" stoichiometry="1"/> <speciesReference constant="true" species="M_glc_D_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SUCDi" metaid="ae9654e3-8ff5-405c-8ebc-a113bfcad1e6" name="succinate_dehydrogenase__irreversible_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024610 AND XFCFBP8418_024620 AND XFCFBP8418_024640</p> <p>SUBSYSTEM: Oxidative_Phosphorylation</p> <p>EC_NUMBER: 1.3.5.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ae9654e3-8ff5-405c-8ebc-a113bfcad1e6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.5.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024610"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024620"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024640"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP3" metaid="ba93ca71-afa0-469e-9d7f-1bd91cd4434a" name="Nucleoside_triphosphate_pyrophosphorylase__dctp_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.6.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ba93ca71-afa0-469e-9d7f-1bd91cd4434a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dctp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dcmp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP6" metaid="ed757e09-76c6-4cca-8623-918f4efc4b9b" name="R_NTPP6" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.6.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ed757e09-76c6-4cca-8623-918f4efc4b9b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP5" metaid="f14e6afc-e004-4b73-8d6d-6c8c0bb24d7e" name="Nucleoside_triphosphate_pyrophosphorylase__datp_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.6.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f14e6afc-e004-4b73-8d6d-6c8c0bb24d7e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_datp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_damp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METDabcpp" metaid="_9bc8d89b-7d82-4017-b7e1-0759a6ae5774" name="R_METDabcpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010500 AND XFCFBP8418_010510 AND XFCFBP8418_010520</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9bc8d89b-7d82-4017-b7e1-0759a6ae5774"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010500"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010510"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010520"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_met_D_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_met_D_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG160abcpp" metaid="_86d0bbc7-9a05-4fd3-935a-bcf7aa6d3150" name="phosphatidylglycerol_transport_via_ABC_system__n_C16_0__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_86d0bbc7-9a05-4fd3-935a-bcf7aa6d3150"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pg160_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pg160_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ATPS4rpp" metaid="f0bf626d-9959-4d50-b908-57a66d78dd55" name="ATP_synthase__four_protons_for_one_ATP___periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023580 AND XFCFBP8418_023590 AND XFCFBP8418_023600 AND XFCFBP8418_023610 AND XFCFBP8418_023620 AND XFCFBP8418_023630 AND XFCFBP8418_023640 AND XFCFBP8418_023650</p> <p>SUBSYSTEM: Oxidative_Phosphorylation</p> <p>EC_NUMBER: 3.6.3.14</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f0bf626d-9959-4d50-b908-57a66d78dd55"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.14"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023600"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023620"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023610"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023590"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023580"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023640"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023630"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023650"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="4"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AMAOTr" metaid="e6386201-1524-44f5-bc9e-ff5b5450bfa2" name="adenosylmethionine_8_amino_7_oxononanoate_transaminase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015830</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.6.1.62</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e6386201-1524-44f5-bc9e-ff5b5450bfa2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.62"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015830"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> <speciesReference constant="true" species="M_8aonn_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amob_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dann_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OAAt2_2pp" metaid="_5b7ec468-c57e-4f07-8b94-82144d9e3605" name="R_OAAt2_2pp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025480</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5b7ec468-c57e-4f07-8b94-82144d9e3605"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025480"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> <speciesReference constant="true" species="M_oaa_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NH3c" metaid="cf25787d-b625-4e50-854a-5f0419385415" name="R_NH3c" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: Spontaneous</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#cf25787d-b625-4e50-854a-5f0419385415"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nh3_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ENOPH" metaid="ab9e5532-81ce-4b2e-8009-a6f5c6645073" name="R_ENOPH" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020250</p> <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> <p>EC_NUMBER: 3.1.3.77</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ab9e5532-81ce-4b2e-8009-a6f5c6645073"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.77"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020250"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dkmpp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dhmtp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CPPPGO2" metaid="_328d0e4c-75eb-41bd-8f17-10156c122052" name="Oxygen_Independent_coproporphyrinogen_III_oxidase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002610</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.3.99.22</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_328d0e4c-75eb-41bd-8f17-10156c122052"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.99.22"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002610"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cpppg3_c" stoichiometry="1"/> <speciesReference constant="true" species="M_amet_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dad_5_c" stoichiometry="2"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="2"/> <speciesReference constant="true" species="M_pppg9_c" stoichiometry="1"/> <speciesReference constant="true" species="M_met_L_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_xyl_D_e" metaid="_2d657b08-0cfe-4ab3-852f-cb44d3994a2d" name="R_EX_xyl_D_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2d657b08-0cfe-4ab3-852f-cb44d3994a2d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_xyl_D_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LSERDHr" metaid="_1b843714-69dc-4846-9dd8-d0bb20effff2" name="R_LSERDHr" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015390</p> <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> <p>EC_NUMBER: 1.1.1.276</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1b843714-69dc-4846-9dd8-d0bb20effff2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.276"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015390"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2amsa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METOX1s" metaid="fc65cd2a-80ce-466a-bb41-c6bf6e2b84b5" name="methionine_oxidation__spontaneous_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: Spontaneous</p> <p>SUBSYSTEM: Methionine_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#fc65cd2a-80ce-466a-bb41-c6bf6e2b84b5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_metsox_S_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FEENTERtpp" metaid="_6d421127-f3ae-416c-94fc-18eb4cc116eb" name="R_FEENTERtpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025340</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6d421127-f3ae-416c-94fc-18eb4cc116eb"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025340"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> <speciesReference constant="true" species="M_enter_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_enter_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACt2rpp" metaid="_8f779ea9-4a35-44b7-b02b-61e49784d0bd" name="R_ACt2rpp" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8f779ea9-4a35-44b7-b02b-61e49784d0bd"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ac_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGMT" metaid="e06ab7fc-72b8-431b-a687-75473d1666e8" name="phosphoglucomutase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023070</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 5.4.2.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e06ab7fc-72b8-431b-a687-75473d1666e8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.2.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023070"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_g1p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_g6p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FORtex" metaid="_183f64a9-9808-41f7-b371-de4aeedc25d6" name="formate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_183f64a9-9808-41f7-b371-de4aeedc25d6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_for_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_for_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HSERTA" metaid="_68945973-e5de-40c3-8e9d-e68a33ce7a1d" name="homoserine_O_trans_acetylase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005140</p> <p>SUBSYSTEM: Methionine_Metabolism</p> <p>EC_NUMBER: 2.3.1.31</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_68945973-e5de-40c3-8e9d-e68a33ce7a1d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.31"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005140"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hom_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_achms_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDPDRE" metaid="_152490d3-7cf1-43d2-88e2-0766d8ff78d4" name="dTDP_4_dehydrorhamnose_3_5_epimerase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026230</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 5.1.3.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_152490d3-7cf1-43d2-88e2-0766d8ff78d4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.3.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026230"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dtdp4d6dg_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dtdp4d6dm_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HPPtpp" metaid="_99c34c8b-d2d9-4d75-ba6c-3a468da8bb20" name="3_hydroxypropionate_transport_via_proton_symport__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_99c34c8b-d2d9-4d75-ba6c-3a468da8bb20"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3hpp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> <speciesReference constant="true" species="M_3hpp_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACODA" metaid="_985eba82-78f5-458d-ac11-ad79cdef0c9a" name="acetylornithine_deacetylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025270</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 3.5.1.16</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_985eba82-78f5-458d-ac11-ad79cdef0c9a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.16"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025270"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acorn_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_orn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDEP2pp" metaid="e67186e2-99f1-4d32-b020-4cf5c4182f6c" name="murein_L_D_endopeptidase__murein5px3p___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e67186e2-99f1-4d32-b020-4cf5c4182f6c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_murein5px3p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_murein5p3p_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPNCL2" metaid="ac9799a1-9612-46a2-9fcf-eb8e479756a9" name="phosphopantothenate_cysteine_ligase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015430</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 6.3.2.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ac9799a1-9612-46a2-9fcf-eb8e479756a9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015430"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_4ppan_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_4ppcys_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL160t2pp" metaid="_189bb35a-cccc-4787-93d1-376f4a96741d" name="fatty_acid_CoA_ligase__hexadecanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.2.1.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_189bb35a-cccc-4787-93d1-376f4a96741d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> <speciesReference constant="true" species="M_hdca_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pmtcoa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G6PDH2r" metaid="_18f38ad3-0c49-4a07-b92b-0b0a39704b2a" name="glucose_6_phosphate_dehydrogenase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024680</p> <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> <p>EC_NUMBER: 1.1.1.49</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_18f38ad3-0c49-4a07-b92b-0b0a39704b2a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.49"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024680"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_g6p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_6pgl_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR140x" metaid="_41865b96-d697-49fe-a260-28590901b124" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C14_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 1.3.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_41865b96-d697-49fe-a260-28590901b124"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_tmrs2eACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_myrsACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDPDRR" metaid="e4371e03-e60d-4744-a7bf-f8b7297e70bc" name="dTDP_4_dehydrorhamnose_reductase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026220</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.133</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e4371e03-e60d-4744-a7bf-f8b7297e70bc"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.133"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026220"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dtdp4d6dm_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dtdprmn_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDPGDr" metaid="_581244d5-f3bb-46eb-9469-fd73d7ae2e78" name="UDPglucose_6_dehydrogenase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_018680</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.22</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_581244d5-f3bb-46eb-9469-fd73d7ae2e78"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.22"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018680"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udpg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadh_c" stoichiometry="2"/> <speciesReference constant="true" species="M_udpglcur_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLTGY1pp" metaid="_0296d9fc-1f09-40ab-8bf9-59a09c3ba31a" name="murein_lytic_transglycosylase__murein4p4p___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_003940 ) OR ( XFCFBP8418_019770 )</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0296d9fc-1f09-40ab-8bf9-59a09c3ba31a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003940"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019770"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_murein4p4p_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PItex" metaid="_3de5ad84-d9ef-4513-b1a1-89ae96a9e24d" name="phosphate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3de5ad84-d9ef-4513-b1a1-89ae96a9e24d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pi_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INSEPIH" metaid="a8f99b02-7604-48a7-acc9-11a945e0f445" name="3D__3_5_4__trihydroxycyclohexane_1_2_dione_hydrolase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a8f99b02-7604-48a7-acc9-11a945e0f445"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dkdepiins_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dglca_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UM3PL" metaid="_99e0cf8b-7c15-4b53-9740-9c2a31a7e1d6" name="UDP_N_acetylmuramate_L_alanyl_gamma_D_glutamyl_meso_diaminopimelate_ligase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026060</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: 6.3.2.45</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_99e0cf8b-7c15-4b53-9740-9c2a31a7e1d6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.45"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026060"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_LalaDgluMdap_c" stoichiometry="1"/> <speciesReference constant="true" species="M_uamr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ugmd_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHORTS" metaid="_0197284e-9752-40f7-a083-ab13da2f90e4" name="dihydroorotase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025380</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.5.2.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0197284e-9752-40f7-a083-ab13da2f90e4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.2.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025380"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dhor_S_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cbasp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRASCS" metaid="_28e8db9c-a6c6-4596-8ddf-48b74c98cd53" name="phosphoribosylaminoimidazolesuccinocarboxamide_synthase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026780</p> <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> <p>EC_NUMBER: 6.3.2.6</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_28e8db9c-a6c6-4596-8ddf-48b74c98cd53"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.6"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026780"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_5aizc_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_25aics_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLNtex" metaid="af01089c-0f17-484a-8e6b-ac20efef9a8f" name="L_glutamine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#af01089c-0f17-484a-8e6b-ac20efef9a8f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gln_L_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gln_L_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_mn2_e" metaid="_35d09179-85ad-4ed9-982a-a811ce8bfd7d" name="R_EX_mn2_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_35d09179-85ad-4ed9-982a-a811ce8bfd7d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_mn2_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP140abcpp" metaid="_64db8afd-c17f-4e58-8243-c385b91488b9" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C14_0__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_64db8afd-c17f-4e58-8243-c385b91488b9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pgp140_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pgp140_p" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_arg_L_e" metaid="_4300546b-8d5e-44b0-a2a6-0312ee8de286" name="R_EX_arg_L_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4300546b-8d5e-44b0-a2a6-0312ee8de286"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_arg_L_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SCYSDS" metaid="a0191e6b-2355-48f8-956c-7a99c741781e" name="R_SCYSDS" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002960 AND XFCFBP8418_025330</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.8.1.7</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a0191e6b-2355-48f8-956c-7a99c741781e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.8.1.7"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025330"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_sufse_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_sufsesh_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT160" metaid="_3b26aa1f-34ca-4dad-ad61-a2a6b9b9bdfe" name="1_hexadecanoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C16_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.3.1.51</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3b26aa1f-34ca-4dad-ad61-a2a6b9b9bdfe"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_1hdecg3p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_palmACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pa160_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AMPTASEPG" metaid="_23f1c327-2a1b-4fcf-90cc-bfefbde6302d" name="R_AMPTASEPG" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015310</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 3.4.11.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_23f1c327-2a1b-4fcf-90cc-bfefbde6302d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.11.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015310"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_progly_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT161" metaid="c64617ac-311d-4b54-aef2-376374955091" name="1_hexadec_7_enoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C16_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.3.1.51</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c64617ac-311d-4b54-aef2-376374955091"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_1hdec9eg3p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hdeACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pa161_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NNDPR" metaid="_83935dc5-8ee9-4dad-8a04-ec426c27cb6f" name="nicotinate_nucleotide_diphosphorylase__carboxylating_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_000560</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.4.2.19</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_83935dc5-8ee9-4dad-8a04-ec426c27cb6f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.19"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000560"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_quln_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nicrnt_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2O2tex" metaid="_4a3c5df9-fcc2-41ee-85d3-57088b40d9d5" name="hydrogen_peroxide_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4a3c5df9-fcc2-41ee-85d3-57088b40d9d5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o2_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o2_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SHK3Dr" metaid="_7406398b-f559-4d85-baa1-6920b86427ee" name="shikimate_dehydrogenase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006320</p> <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> <p>EC_NUMBER: 1.1.1.25</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7406398b-f559-4d85-baa1-6920b86427ee"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.25"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006320"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3dhsk_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_skm_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACGK" metaid="_3aeb879a-defd-43b3-9081-935e4c82a433" name="acetylglutamate_kinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025260</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 2.7.2.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3aeb879a-defd-43b3-9081-935e4c82a433"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.2.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025260"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acglu_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_acg5p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XYLK2" metaid="_9e88a5e9-cd1c-4f71-90df-822c1c0b7c14" name="R_XYLK2" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9e88a5e9-cd1c-4f71-90df-822c1c0b7c14"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_xylu_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_xu5p_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MNt2pp" metaid="_15383220-6b0e-4974-b2b1-6ab3c9986d1b" name="manganese__Mn_2__transport_in_via_proton_symport__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025100</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_15383220-6b0e-4974-b2b1-6ab3c9986d1b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025100"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_mn2_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_mn2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACGS" metaid="_134e5c0a-594b-48d7-ac9a-3c801410c386" name="N_acetylglutamate_synthase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025260</p> <p>SUBSYSTEM: Glutamate_Metabolism</p> <p>EC_NUMBER: 2.3.1.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_134e5c0a-594b-48d7-ac9a-3c801410c386"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025260"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acglu_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR141x" metaid="c193df77-3f15-4f73-bf4a-295ff19c3f63" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C14_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 1.3.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c193df77-3f15-4f73-bf4a-295ff19c3f63"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_t3c7mrseACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_tdeACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUSAtpp" metaid="_2a1e61c7-0d81-43e9-92ba-81589d52587d" name="Fusidic_acid_transport_via_TolC_system" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2a1e61c7-0d81-43e9-92ba-81589d52587d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> <speciesReference constant="true" species="M_fusa_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_fusa_e" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HEX1" metaid="b51b0918-0366-46af-9051-2f9d45d9dce0" name="hexokinase__D_glucose_ATP_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024690</p> <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> <p>EC_NUMBER: 2.7.1.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b51b0918-0366-46af-9051-2f9d45d9dce0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024690"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glc_D_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_g6p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA141abcpp" metaid="af4f3f74-fbd6-48a3-b446-daf7dc9619e9" name="phosphatidate_transport_via_ABC_system__n_C14_1__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#af4f3f74-fbd6-48a3-b446-daf7dc9619e9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pa141_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pa141_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MG2tex" metaid="_010331b8-4e51-4805-adbd-540f39c725d8" name="magnesium__Mg_2__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_010331b8-4e51-4805-adbd-540f39c725d8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_mg2_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_mg2_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UREAtpp" metaid="f4b7ccf6-301d-4907-9022-b862e6a29f46" name="Urea_transport_via_facilitate_diffusion__periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020710</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f4b7ccf6-301d-4907-9022-b862e6a29f46"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_urea_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_urea_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS141pp" metaid="ab3b6156-8ad9-47af-bfcc-e942f8f7392c" name="cardiolipin_synthase__periplasmic__n_C14_1_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ab3b6156-8ad9-47af-bfcc-e942f8f7392c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pg141_p" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_clpn141_p" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDCPDP" metaid="f70432ed-67fa-4f14-9fa2-7dd667e8358a" name="undecaprenyl_diphosphatase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_017720</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 3.6.1.27</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f70432ed-67fa-4f14-9fa2-7dd667e8358a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.27"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017720"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_udcpdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udcpp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYtex" metaid="_1663fe58-4112-48e2-8cef-d372f9bc3c20" name="glycine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1663fe58-4112-48e2-8cef-d372f9bc3c20"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gly_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gly_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CA2tex" metaid="_6f33b15b-8f42-472c-9e1e-5a417313088f" name="R_CA2tex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6f33b15b-8f42-472c-9e1e-5a417313088f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ca2_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ca2_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LACZ" metaid="b6a2eacf-02ef-4757-b073-21d3fe545be6" name="R_LACZ" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007430</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 3.2.1.23</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b6a2eacf-02ef-4757-b073-21d3fe545be6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.23"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007430"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_lcts_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glc_D_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gal_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPR" metaid="bed293e1-9ce9-416c-b0e5-fa5e6511d118" name="N_acetyl_g_glutamyl_phosphate_reductase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025250</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 1.2.1.38</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#bed293e1-9ce9-416c-b0e5-fa5e6511d118"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.38"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025250"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acg5sa_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acg5p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Bztex" metaid="_5b62e373-461f-4a8a-92f4-c11ee060f8aa" name="R_Bztex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: Spontaneous</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5b62e373-461f-4a8a-92f4-c11ee060f8aa"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_bz_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_bz_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XYLabcpp" metaid="_49d829e8-5877-4754-82ca-e6d254215d5b" name="R_XYLabcpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_019450</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_49d829e8-5877-4754-82ca-e6d254215d5b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019450"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_xyl_D_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_xyl_D_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PFK_2" metaid="a62fee40-e915-4b75-9c4c-217c6b7d6451" name="R_PFK_2" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026080</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 2.7.1.11</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a62fee40-e915-4b75-9c4c-217c6b7d6451"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.11"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026080"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_tag6p_D_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_tagdp_D_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_ala_L_e" metaid="bd85b437-c114-49ec-9f03-45aab86b866e" name="R_EX_ala_L_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#bd85b437-c114-49ec-9f03-45aab86b866e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_ala_L_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_A5PISO" metaid="_3dc617f3-cd4a-4062-9e2c-9ecde8ac30b4" name="arabinose_5_phosphate_isomerase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003470</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 5.3.1.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3dc617f3-cd4a-4062-9e2c-9ecde8ac30b4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003470"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ru5p_D_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ara5p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PFK_3" metaid="cf04e16a-842a-43d4-9bcc-7c6ce92d5f34" name="R_PFK_3" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026080</p> <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> <p>EC_NUMBER: 2.7.1.11</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#cf04e16a-842a-43d4-9bcc-7c6ce92d5f34"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.11"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026080"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_s7p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_s17bp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DMPPS" metaid="_0c69784a-fed3-4cee-b9ff-0b780aa4c2e9" name="1_hydroxy_2_methyl_2__E__butenyl_4_diphosphate_reductase__dmpp_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004660</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.17.7.4</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0c69784a-fed3-4cee-b9ff-0b780aa4c2e9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.7.4"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004660"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2mb4p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dmpp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PTRCabcpp" metaid="e09fa73e-4241-4ee8-aace-6000c6002843" name="putrescine_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: 3.6.3.31</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e09fa73e-4241-4ee8-aace-6000c6002843"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.31"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ptrc_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ptrc_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LIPAabctex" metaid="d0901669-e727-4530-ae87-74cfa07d86b0" name="R_LIPAabctex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003500 AND XFCFBP8418_003510 AND XFCFBP8418_015320 AND XFCFBP8418_015330</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d0901669-e727-4530-ae87-74cfa07d86b0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003510"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003500"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015330"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015320"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_kdo2lipidA_XF_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_kdo2lipidA_XF_e" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THFAT" metaid="a264d301-0933-454c-a596-0572f42082d6" name="Tetrahydrofolate_aminomethyltransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.1.2.10</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a264d301-0933-454c-a596-0572f42082d6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.10"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_methf_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_5fthf_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LIPOS" metaid="_2abbd216-a9dd-4510-8611-8ff11ef704b3" name="Lipoate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_022360</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.8.1.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2abbd216-a9dd-4510-8611-8ff11ef704b3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.8.1.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022360"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_amet_c" stoichiometry="2"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_4fe4s_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_octapb_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_2fe2s_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dad_5_c" stoichiometry="2"/> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_lipopb_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fe2_c" stoichiometry="2"/> <speciesReference constant="true" species="M_met_L_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PHEMEabcpp" metaid="_54264b6d-1559-46bf-93b1-caa233327906" name="R_PHEMEabcpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_005050 AND XFCFBP8418_005060 AND XFCFBP8418_005070 AND XFCFBP8418_005090</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_54264b6d-1559-46bf-93b1-caa233327906"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005090"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005050"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005060"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005070"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pheme_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pheme_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGMH" metaid="_425d6e2c-d506-41be-b57a-4943a04a2ff4" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_beta__1_4_N_acetylglucosaminidase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021350</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_425d6e2c-d506-41be-b57a-4943a04a2ff4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021350"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_anhgm_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_acgam_c" stoichiometry="1"/> <speciesReference constant="true" species="M_anhm_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT180" metaid="_16fc294f-dc7e-4e90-9467-057ba96fdbad" name="1_octadecanoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C18_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.3.1.51</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_16fc294f-dc7e-4e90-9467-057ba96fdbad"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_1odecg3p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ocdcaACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pa180_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT181" metaid="ee2e90a2-a5c0-43d3-b432-96199a842fcd" name="1_octadec_7_enoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C18_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.3.1.51</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ee2e90a2-a5c0-43d3-b432-96199a842fcd"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_octeACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_1odec11eg3p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pa181_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLNabc" metaid="_83627658-def1-4564-a3c7-31ec67a96de5" name="R_GLNabc" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_83627658-def1-4564-a3c7-31ec67a96de5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gln_L_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD181" metaid="_9a7e24d6-b41f-423f-b110-002e27e6c5b9" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C18_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 4.2.1.59</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9a7e24d6-b41f-423f-b110-002e27e6c5b9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3hcvac11eACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_t3c11vaceACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD180" metaid="_056f92d6-acaa-44c3-90a4-c6a31f073669" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C18_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 4.2.1.59</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_056f92d6-acaa-44c3-90a4-c6a31f073669"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3hoctaACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_toctd2eACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE161abcpp" metaid="_77f7a92e-9927-4d64-b397-a4fcfa8138fe" name="phosphatidylethanolamine_transport_via_ABC_system__n_C16_1__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_77f7a92e-9927-4d64-b397-a4fcfa8138fe"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pe161_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pe161_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GAMtex" metaid="ead08a95-0a7b-4d68-953d-b8dd8a7c3a6a" name="R_GAMtex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ead08a95-0a7b-4d68-953d-b8dd8a7c3a6a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gam_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gam_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SERtex" metaid="a8ef9bf8-4075-4ca4-a656-34f3d41452c6" name="L_serine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a8ef9bf8-4075-4ca4-a656-34f3d41452c6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ser_L_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ser_L_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHFR" metaid="_1f19b72f-eeda-4abf-920a-07d6e7cffb38" name="dihydrofolate_reductase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021150</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.5.1.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1f19b72f-eeda-4abf-920a-07d6e7cffb38"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021150"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dhf_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHFS" metaid="_13a5fe0f-2844-417f-a8eb-1abf93b01f20" name="dihydrofolate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_000740</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 6.3.2.12</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_13a5fe0f-2844-417f-a8eb-1abf93b01f20"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.12"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000740"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dhpt_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dhf_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FEENTERtex" metaid="eacf7c47-e3ea-4bab-978d-9324629cf480" name="R_FEENTERtex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_012340</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#eacf7c47-e3ea-4bab-978d-9324629cf480"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_enter_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_enter_e" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UPP3MT" metaid="fa32479a-0e66-4a55-a01e-631b6c2b6a7d" name="uroporphyrinogen_methyltransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010970</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.1.1.107</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#fa32479a-0e66-4a55-a01e-631b6c2b6a7d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.107"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010970"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_amet_c" stoichiometry="2"/> <speciesReference constant="true" species="M_uppg3_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dscl_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ahcys_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XYLI1" metaid="cd735da3-d07f-42ea-9fa9-3f084052a9d4" name="R_XYLI1" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 5.3.1.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#cd735da3-d07f-42ea-9fa9-3f084052a9d4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_xyl_D_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_xylu_D_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XYLK" metaid="_98a4c423-a9b2-42de-8f33-8674b923f3d6" name="xylulokinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 2.7.1.17</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_98a4c423-a9b2-42de-8f33-8674b923f3d6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.17"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_xylu_D_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_xu5p_D_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTHRDHpp" metaid="_84d8b4a0-718d-491a-84ac-f7e7523b2fad" name="glutathione_hydralase__periplasmic_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025410</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 3.4.19.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_84d8b4a0-718d-491a-84ac-f7e7523b2fad"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.19.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025410"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> <speciesReference constant="true" species="M_gthrd_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cgly_p" stoichiometry="1"/> <speciesReference constant="true" species="M_glu_L_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHTNtex" metaid="_5a476698-d09d-4f4c-a26c-fd193b04d412" name="R_CHTNtex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5a476698-d09d-4f4c-a26c-fd193b04d412"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_chtbs_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_chtbs_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MSAR" metaid="_98df4efe-41f3-49e7-9a7f-8987cb7ec2e3" name="malonic_semialdehyde_reductase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015390</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 1.1.1.298</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_98df4efe-41f3-49e7-9a7f-8987cb7ec2e3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.298"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015390"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_msa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3hpp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AMPMS2" metaid="_3b4b5613-333a-4920-aa78-cf2eed4f8370" name="4_amino_2_methyl_5_phosphomethylpyrimidine_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_016510 ) OR ( XFCFBP8418_027850 )</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 4.1.99.17</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3b4b5613-333a-4920-aa78-cf2eed4f8370"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.99.17"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016510"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027850"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_air_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> <speciesReference constant="true" species="M_4ampm_c" stoichiometry="1"/> <speciesReference constant="true" species="M_for_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDCP3pp" metaid="_573aff9f-f091-49a1-9e66-52e4879215fc" name="murein_D_D_carboxypeptidase__murein5p5p___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_018620 ) OR ( XFCFBP8418_020420 )</p> <p>SUBSYSTEM: Murein_Biosynthesis</p> <p>EC_NUMBER: 3.4.16.4</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_573aff9f-f091-49a1-9e66-52e4879215fc"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.16.4"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020420"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_murein5p4p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARD2" metaid="ce7fd466-1fc5-4da8-a40d-5d70368ec9fa" name="R_ARD2" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020240</p> <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> <p>EC_NUMBER: 1.13.11.54</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ce7fd466-1fc5-4da8-a40d-5d70368ec9fa"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.13.11.54"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020240"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dhmtp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_4met2obut_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_P5CD1p" metaid="_4ad84f32-ce3b-4630-8826-a3020d5140e2" name="1_pyrroline_5_carboxylate_dehydrogenase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 1.5.1.12</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4ad84f32-ce3b-4630-8826-a3020d5140e2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.12"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> <speciesReference constant="true" species="M_1pyr5c_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FOMETR" metaid="_1651cb82-c525-41cb-8f93-9e8bb6281ea6" name="R_FOMETR" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_001390</p> <p>SUBSYSTEM: Folate_Metabolism</p> <p>EC_NUMBER: 2.1.2.10</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1651cb82-c525-41cb-8f93-9e8bb6281ea6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.10"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001390"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_5fthf_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_methf_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Kt2pp" metaid="_8718fecd-eee8-420f-a4be-3aeee5445ae4" name="potassium_transport_in_via_proton_symport__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_000330 ) OR ( XFCFBP8418_016360 ) OR ( XFCFBP8418_027690 )</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8718fecd-eee8-420f-a4be-3aeee5445ae4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016360"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000330"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027690"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> <speciesReference constant="true" species="M_k_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_k_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDPGDH" metaid="_8e841417-5fac-40c4-a287-87f2a0124da0" name="dTDPglucose_4_6_dehydratase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026250</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 4.2.1.46</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8e841417-5fac-40c4-a287-87f2a0124da0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.46"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026250"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dtdpglu_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dtdp4d6dg_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYCLTt4ex" metaid="_5ce94b73-8d6a-4acf-815e-aec66fc9a7d0" name="R_GLYCLTt4ex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5ce94b73-8d6a-4acf-815e-aec66fc9a7d0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glyclt_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glyclt_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DXPRIi" metaid="bffea5f3-c1e8-4d36-9200-91ba586e143d" name="1_deoxy_D_xylulose_reductoisomerase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024850</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.267</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#bffea5f3-c1e8-4d36-9200-91ba586e143d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.267"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024850"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2me4p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASNTRS" metaid="_84fdebe3-555f-439e-87c7-5a4f3f5c0d31" name="R_ASNTRS" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_012160</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 6.1.1.22</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_84fdebe3-555f-439e-87c7-5a4f3f5c0d31"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.22"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012160"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_asn_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trnaasn_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_asntrna_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYTBO3_4pp" metaid="_01dd1124-5e22-4fa3-8cee-1216e6e867e1" name="cytochrome_oxidase_bo3__ubiquinol_8__4_protons___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003690 AND XFCFBP8418_003700 AND XFCFBP8418_003710 AND XFCFBP8418_003720</p> <p>SUBSYSTEM: Oxidative_Phosphorylation</p> <p>EC_NUMBER: 1.10.3.10</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_01dd1124-5e22-4fa3-8cee-1216e6e867e1"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.10.3.10"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003720"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003710"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003700"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_o2_c" stoichiometry="0.5"/> <speciesReference constant="true" species="M_h_c" stoichiometry="4"/> <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="4"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR120x" metaid="_635730d1-8a7f-4230-8bd9-0b5daef1f031" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C12_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 1.3.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_635730d1-8a7f-4230-8bd9-0b5daef1f031"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_tddec2eACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ddcaACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_EPS_XF_e" metaid="_5512fd43-90cc-4517-bc0a-5a90ba495950" name="R_DM_EPS_XF_e" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5512fd43-90cc-4517-bc0a-5a90ba495950"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_EPS_XF_e" stoichiometry="1"/> </listOfReactants> <listOfProducts/> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_dextrin_DEC_e_" metaid="d21c4e58-5421-466c-aa2b-2a2f493b5588" name="R_dextrin_DEC_e_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d21c4e58-5421-466c-aa2b-2a2f493b5588"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dextrin_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_14aglucan_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRD_L" metaid="_7951650e-b0b5-43cb-9716-1a425fd82b23" name="L_threonine_deaminase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_017920</p> <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> <p>EC_NUMBER: 4.3.1.19</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7951650e-b0b5-43cb-9716-1a425fd82b23"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.1.19"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017920"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_thr_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_2obut_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MAN1PT2r" metaid="f011fe9c-b111-4709-a072-ea9a04772109" name="R_MAN1PT2r" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026210</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.7.7.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f011fe9c-b111-4709-a072-ea9a04772109"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026210"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_man1p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gdpmann_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE2t2pp" metaid="b471c729-206a-4924-bb5d-60b302adf7d5" name="iron__II__transport_in_via_proton_symport__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025100</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b471c729-206a-4924-bb5d-60b302adf7d5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025100"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_fe2_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_fe2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DNTPPA" metaid="_4c7cc316-928b-4cca-b6ce-eee5a4d3a1a7" name="R_DNTPPA" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023820</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 3.6.1.67</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4c7cc316-928b-4cca-b6ce-eee5a4d3a1a7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.67"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023820"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ahdt_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dhpmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_VALTRS" metaid="_59bfe82d-057b-4478-a969-8ad19fed6667" name="Valyl_tRNA_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015270</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 6.1.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_59bfe82d-057b-4478-a969-8ad19fed6667"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015270"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_val_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trnaval_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_valtrna_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_man_e" metaid="c0b99037-9bd3-47d9-b2dd-d8746de1bfb6" name="R_EX_man_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c0b99037-9bd3-47d9-b2dd-d8746de1bfb6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_man_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DGLUISO" metaid="_5e26ce7d-687d-4b74-8e67-070b09d6f6a4" name="5_deoxy_D_glucuronic_acid_isomerase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5e26ce7d-687d-4b74-8e67-070b09d6f6a4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dglca_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dkglc_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACt4pp" metaid="_3fdc7bfe-8c80-414e-98a0-8c6be1009c89" name="Na__Acetate_symport__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020610</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3fdc7bfe-8c80-414e-98a0-8c6be1009c89"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020610"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ac_p" stoichiometry="1"/> <speciesReference constant="true" species="M_na1_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> <speciesReference constant="true" species="M_na1_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD161" metaid="_1629e996-4f3c-4656-9eac-7b497c254231" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C16_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 4.2.1.59</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1629e996-4f3c-4656-9eac-7b497c254231"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3hcpalm9eACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_t3c9palmeACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDEP1pp" metaid="c3ea7a13-1314-4e42-9915-b527a887f011" name="murein_D_D_endopeptidase__murein4px4p___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c3ea7a13-1314-4e42-9915-b527a887f011"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_murein4px4p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_murein4p4p_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD160" metaid="_1a5a8a65-35a7-4682-af84-23430d8143a7" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C16_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 4.2.1.59</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1a5a8a65-35a7-4682-af84-23430d8143a7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3hpalmACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_tpalm2eACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLtpp" metaid="_62636e29-a15d-4c1a-b82f-e7d10ec38aed" name="R_CLtpp" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_62636e29-a15d-4c1a-b82f-e7d10ec38aed"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cl_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cl_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_so4_e" metaid="c973e658-83ca-4cdb-884a-5b3695cd90e7" name="R_EX_so4_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c973e658-83ca-4cdb-884a-5b3695cd90e7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_so4_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROabcpp" metaid="d5fa365b-a304-44ee-ae06-93304242dd43" name="L_proline_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_007680 AND XFCFBP8418_007690 ) OR ( XFCFBP8418_022120 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d5fa365b-a304-44ee-ae06-93304242dd43"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007690"/> </fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022120"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pro_L_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR121x" metaid="_2b2701db-a16c-4397-bbb6-2fac326bbbaa" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C12_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 1.3.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2b2701db-a16c-4397-bbb6-2fac326bbbaa"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_t3c5ddeceACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cddec5eACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACMUMptspp" metaid="f7b75691-42ce-44e0-ade6-9e876276580c" name="R_ACMUMptspp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f7b75691-42ce-44e0-ade6-9e876276580c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_acmum_p" stoichiometry="1"/> <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acmum6p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TTRCYCtpp" metaid="f42c71ab-0b19-4b93-9518-684a533bc0fd" name="Tetracycline_transport_via_TolC_system" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f42c71ab-0b19-4b93-9518-684a533bc0fd"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ttrcyc_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ttrcyc_e" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GALt2" metaid="_70336839-2c1b-4ec1-95ff-43ed5dcb735c" name="R_GALt2" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_018650</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_70336839-2c1b-4ec1-95ff-43ed5dcb735c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018650"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> <speciesReference constant="true" species="M_gal_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gal_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BTNt2tex" metaid="_17065047-6a16-4712-85c5-43d495f00b10" name="R_BTNt2tex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_17065047-6a16-4712-85c5-43d495f00b10"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_btn_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_btn_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BTNt2ipp" metaid="_4c4a9986-87b2-4f2c-9a86-7cbb89e5c394" name="R_BTNt2ipp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4c4a9986-87b2-4f2c-9a86-7cbb89e5c394"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_btn_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_btn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAPGR" metaid="_752a8888-0aab-47a8-97bc-e69e63a4222b" name="UDP_N_acetylenolpyruvoylglucosamine_reductase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_012220</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 1.3.1.98</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_752a8888-0aab-47a8-97bc-e69e63a4222b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.98"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012220"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_uaccg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_uamr_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_St" metaid="_734bbc0a-8628-4df7-9cb5-6e444f23dcb6" name="R_St" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: Spontaneous</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_734bbc0a-8628-4df7-9cb5-6e444f23dcb6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_s_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_s_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ICL" metaid="_37a917fc-b955-4189-aed5-76c371c3896e" name="Isocitrate_lyase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Anaplerotic_Reactions</p> <p>EC_NUMBER: 4.1.3.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_37a917fc-b955-4189-aed5-76c371c3896e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.3.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_icit_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glx_c" stoichiometry="1"/> <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ATPHs" metaid="_9c2c5156-ceed-4286-a628-a988c5de0fbe" name="R_ATPHs" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.5.4.18</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9c2c5156-ceed-4286-a628-a988c5de0fbe"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.18"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_itp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK4" metaid="_8e6b4881-d61c-4ae2-9d38-348c4a9acc87" name="nucleoside_diphosphate_kinase__ATP_dTDP_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.7.4.6</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8e6b4881-d61c-4ae2-9d38-348c4a9acc87"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dtdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dttp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACLS" metaid="f6e3c3c3-5844-456c-89fa-a9cdbd61623d" name="acetolactate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_017900 AND XFCFBP8418_017910</p> <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> <p>EC_NUMBER: 2.2.1.6</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f6e3c3c3-5844-456c-89fa-a9cdbd61623d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.2.1.6"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017900"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pyr_c" stoichiometry="2"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_alac_S_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK5" metaid="_8dfdec93-4f40-4c39-9f3c-d96e30952e65" name="nucleoside_diphosphate_kinase__ATP_dGDP_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.7.4.6</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8dfdec93-4f40-4c39-9f3c-d96e30952e65"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dgdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dgtp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SSALy" metaid="_8f4264f6-9e76-4632-9aec-d02cebd4e009" name="R_SSALy" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 1.2.1.16</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8f4264f6-9e76-4632-9aec-d02cebd4e009"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.16"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_sucsal_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MG2t3_2pp" metaid="_24a2065d-926c-4daf-a5a3-c451a3bdd574" name="R_MG2t3_2pp" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_24a2065d-926c-4daf-a5a3-c451a3bdd574"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_mg2_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_mg2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGMt2pp" metaid="_499cd0da-ac38-445f-be2c-0fd37860bb0d" name="GlcNAc_anhMurNAc_transport_in_via_proton_symport__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015550</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_499cd0da-ac38-445f-be2c-0fd37860bb0d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015550"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_anhgm_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_anhgm_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK2" metaid="fb8b0ac5-9d06-4124-8cdf-31744363fa53" name="nucleoside_diphosphate_kinase__ATP_UDP_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.7.4.6</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#fb8b0ac5-9d06-4124-8cdf-31744363fa53"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGt2rpp" metaid="ccccc1d4-b6f1-49bf-85f7-6f7c444a7c54" name="R_ARGt2rpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020210</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ccccc1d4-b6f1-49bf-85f7-6f7c444a7c54"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020210"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> <speciesReference constant="true" species="M_arg_L_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK3" metaid="_6937dd0f-e67b-4fa0-9e97-a7fa4f63c3a6" name="nucleoside_diphosphate_kinase__ATP_CDP_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.7.4.6</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6937dd0f-e67b-4fa0-9e97-a7fa4f63c3a6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cdp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHORS" metaid="_6a897d1f-49f8-4da7-bd88-a7f00cd4ff26" name="chorismate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003900</p> <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> <p>EC_NUMBER: 4.2.3.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6a897d1f-49f8-4da7-bd88-a7f00cd4ff26"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.3.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003900"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3psme_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_chor_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THYMt3pp" metaid="_0f387fca-8fc8-4707-9393-ce4bf257835e" name="R_THYMt3pp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0f387fca-8fc8-4707-9393-ce4bf257835e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_thym_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_thym_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK1" metaid="_5ff4275e-3068-414e-9825-963bd0aaaace" name="nucleoside_diphosphate_kinase__ATP_GDP_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.7.4.6</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5ff4275e-3068-414e-9825-963bd0aaaace"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHORM" metaid="c9ef9723-b4f3-45c4-b434-b1d82a17f661" name="chorismate_mutase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021090</p> <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> <p>EC_NUMBER: 5.4.99.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c9ef9723-b4f3-45c4-b434-b1d82a17f661"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.99.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021090"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_chor_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pphn_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SLNTtex" metaid="_59bfd58d-db80-4046-87fa-07e1fe20a2e9" name="R_SLNTtex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_59bfd58d-db80-4046-87fa-07e1fe20a2e9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_slnt_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_slnt_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_lys_L_e" metaid="_34b3bd5b-8073-429c-8023-21cc0a758eb2" name="R_EX_lys_L_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_34b3bd5b-8073-429c-8023-21cc0a758eb2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_lys_L_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK8" metaid="df515a47-fefa-4505-b7b3-5dd650efff0a" name="nucleoside_diphosphate_kinase__ATP_dADP_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.7.4.6</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#df515a47-fefa-4505-b7b3-5dd650efff0a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dadp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_datp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK6" metaid="_1cf12621-15ab-45dc-8978-5853bee37832" name="nucleoside_diphosphate_kinase__ATP_dUDP_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.7.4.6</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1cf12621-15ab-45dc-8978-5853bee37832"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dudp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dutp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK7" metaid="_6ae55dbd-0ec3-48a3-87e5-aeab9240820a" name="nucleoside_diphosphate_kinase__ATP_dCDP_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.7.4.6</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6ae55dbd-0ec3-48a3-87e5-aeab9240820a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dcdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dctp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD141" metaid="_90032cc8-9ce7-4a28-933b-85c43b405895" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C14_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 4.2.1.59</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_90032cc8-9ce7-4a28-933b-85c43b405895"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3hcmrs7eACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_t3c7mrseACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ETFDH" metaid="fa3dc8e0-7469-4e03-9a23-76f958d313c6" name="Electron_transferring_flavoprotein_dehydrogenase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_022160 AND XFCFBP8418_026260 AND XFCFBP8418_026270</p> <p>SUBSYSTEM: Oxidative_Phosphorylation</p> <p>EC_NUMBER: 1.5.5.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#fa3dc8e0-7469-4e03-9a23-76f958d313c6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.5.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026260"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026270"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_etfrd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_etfox_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD140" metaid="ff0ba4ff-1b01-455b-b108-acf6ac66253b" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C14_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 4.2.1.59</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ff0ba4ff-1b01-455b-b108-acf6ac66253b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3hmrsACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_tmrs2eACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDH2" metaid="e1d8bd90-d0d4-467b-8a79-3b5c9ac34ffd" name="Malate_dehydrogenase__ubiquinone_8_as_acceptor_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_009850</p> <p>SUBSYSTEM: Citric_Acid_Cycle</p> <p>EC_NUMBER: 1.1.5.4</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e1d8bd90-d0d4-467b-8a79-3b5c9ac34ffd"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.5.4"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009850"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> <speciesReference constant="true" species="M_mal_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR181tipp" metaid="_23a8f60b-f236-41c5-930b-37dcce5a346b" name="R_12DGR181tipp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_23a8f60b-f236-41c5-930b-37dcce5a346b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_12dgr181_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_12dgr181_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD9" metaid="d8eb237f-c639-4696-b1d4-d9ed1d3f2ce7" name="5__nucleotidase__GMP_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.1.3.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d8eb237f-c639-4696-b1d4-d9ed1d3f2ce7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gmp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gsn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PMPK" metaid="_748158b4-58e6-4058-b881-81fe9214c5f9" name="phosphomethylpyrimidine_kinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006340</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.7.4.7</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_748158b4-58e6-4058-b881-81fe9214c5f9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.7"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006340"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_4ampm_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2mahmp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD5" metaid="b12d5780-c02d-4806-a0aa-ae388924f32e" name="5__nucleotidase__dTMP_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.1.3.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b12d5780-c02d-4806-a0aa-ae388924f32e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dtmp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_thymd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTHPe" metaid="_07676509-b6dc-4312-b61e-6d00cf2d7843" name="glutathione_peroxidase__e_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_016490 ) OR ( XFCFBP8418_027830 )</p> <p>SUBSYSTEM: Superoxide_radicals_degradation</p> <p>EC_NUMBER: 1.11.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_07676509-b6dc-4312-b61e-6d00cf2d7843"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.11.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027830"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016490"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gthrd_e" stoichiometry="2"/> <speciesReference constant="true" species="M_h2o2_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gthox_e" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_e" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD6" metaid="b2e4836e-8385-49c1-bce5-d7b29f6708a9" name="5__nucleotidase__dAMP_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.1.3.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b2e4836e-8385-49c1-bce5-d7b29f6708a9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_damp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dad_2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD7" metaid="ef706ea1-e25a-4328-8f3e-3adff8714efc" name="5__nucleotidase__AMP_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.1.3.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ef706ea1-e25a-4328-8f3e-3adff8714efc"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD8" metaid="_8a0f2edf-f196-43d9-bafe-75bb488fbe30" name="5__nucleotidase__dGMP_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.1.3.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8a0f2edf-f196-43d9-bafe-75bb488fbe30"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dgmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dgsn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD1" metaid="_2af412c4-0b5e-4ea6-a36d-04b8d824a7c2" name="5__nucleotidase__dUMP_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.1.3.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2af412c4-0b5e-4ea6-a36d-04b8d824a7c2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dump_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_duri_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD2" metaid="_44c95b00-242e-492b-b9ec-734ffe6b1499" name="5__nucleotidase__UMP_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.1.3.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_44c95b00-242e-492b-b9ec-734ffe6b1499"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_uri_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD3" metaid="_3fa0db80-f0dd-4110-b165-68ae0a69d35a" name="5__nucleotidase__dCMP_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.1.3.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3fa0db80-f0dd-4110-b165-68ae0a69d35a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dcmp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dcyt_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD4" metaid="ea65d95f-0616-4577-92a3-5925cbdc1c70" name="5__nucleotidase__CMP_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.1.3.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ea65d95f-0616-4577-92a3-5925cbdc1c70"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cytd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PHEMEtiex" metaid="bd3417a6-6b7f-4ceb-bcaa-c40abddd67ad" name="R_PHEMEtiex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#bd3417a6-6b7f-4ceb-bcaa-c40abddd67ad"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pheme_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pheme_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DBTSr" metaid="b5bd87e7-9dc6-46dd-8b15-72d3bba6ccee" name="dethiobiotin_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005250</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 6.3.3.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b5bd87e7-9dc6-46dd-8b15-72d3bba6ccee"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.3.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005250"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dann_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dtbt_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE3Gabcpp" metaid="_0a9e571a-729f-4b63-a847-32f19c7e41dd" name="R_FE3Gabcpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_012840</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0a9e571a-729f-4b63-a847-32f19c7e41dd"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012840"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fe3_p" stoichiometry="1"/> <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fe3_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLCGSD_c" metaid="c37202c6-f0f8-4fd7-aeaf-7049b792bf93" name="R_GLCGSD_c" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 3.2.1.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c37202c6-f0f8-4fd7-aeaf-7049b792bf93"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="11"/> <speciesReference constant="true" species="M_14aglucan_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glc_D_c" stoichiometry="12"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2SO" metaid="db507ffb-2fd9-443e-9dfc-62c2a6653f5f" name="R_H2SO" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#db507ffb-2fd9-443e-9dfc-62c2a6653f5f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2s_c" stoichiometry="1"/> <speciesReference constant="true" species="M_o2_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_so4_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TMDS" metaid="_00cd6cef-032d-4134-8100-858239e9af41" name="thymidylate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021160</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.1.1.45</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_00cd6cef-032d-4134-8100-858239e9af41"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.45"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021160"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dump_c" stoichiometry="1"/> <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dtmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dhf_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PDX5PS" metaid="_8bf4a65b-e5cb-4699-a6f4-fa2a050deccc" name="Pyridoxine_5__phosphate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010890 AND XFCFBP8418_014620</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8bf4a65b-e5cb-4699-a6f4-fa2a050deccc"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014620"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010890"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_phthr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> <speciesReference constant="true" species="M_pdx5p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSERTr" metaid="_880ff223-84ce-40fd-b6b5-464a0a327b33" name="phosphoserine_transaminase_reversible" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021100</p> <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> <p>EC_NUMBER: 2.6.1.52</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_880ff223-84ce-40fd-b6b5-464a0a327b33"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.52"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021100"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3php_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pser_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SPMS" metaid="_89460829-87c3-46b3-8c6c-595f9fe28999" name="spermidine_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015370</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 2.5.1.16</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_89460829-87c3-46b3-8c6c-595f9fe28999"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.16"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015370"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ametam_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ptrc_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_5mta_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_spmd_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGN" metaid="_2a015dd2-0581-48c4-9594-0a49331c188c" name="arginase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 3.5.3.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2a015dd2-0581-48c4-9594-0a49331c188c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.3.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_orn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_urea_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CTPS2" metaid="_13da69ab-0d1c-4f42-bee4-2a1d39160097" name="CTP_synthase__glutamine_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_022240</p> <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> <p>EC_NUMBER: 6.3.4.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_13da69ab-0d1c-4f42-bee4-2a1d39160097"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022240"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ATPPRTr" metaid="_0c686895-bb92-4259-b366-6864383857b5" name="ATP_phosphoribosyltransferase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020330</p> <p>SUBSYSTEM: Histidine_Metabolism</p> <p>EC_NUMBER: 2.4.2.17</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0c686895-bb92-4259-b366-6864383857b5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.17"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020330"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_prbatp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDCP5pp" metaid="ffdcc002-2deb-49f2-9bb9-e9e6a9bfcd36" name="murein_D_D_carboxypeptidase__murein5p3p___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_018620 ) OR ( XFCFBP8418_020420 )</p> <p>SUBSYSTEM: Murein_Biosynthesis</p> <p>EC_NUMBER: 3.4.16.4</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ffdcc002-2deb-49f2-9bb9-e9e6a9bfcd36"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.16.4"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020420"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_murein5p3p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_murein4p3p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PDX5PO" metaid="_803d8994-51db-41c0-8563-f8707cce7608" name="pyridoxine_5__phosphate_oxidase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004150</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.4.3.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_803d8994-51db-41c0-8563-f8707cce7608"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.4.3.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004150"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pdx5p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pydx5p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROD2" metaid="b5d69dbf-275a-4438-95e0-a0da3d4b00f3" name="Proline_dehydrogenase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 1.5.99.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b5d69dbf-275a-4438-95e0-a0da3d4b00f3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.99.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_1pyr5c_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_APCS" metaid="f189ca07-aa4c-49ba-a22a-686d1706b5f5" name="R_APCS" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015370</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 2.5.1.16</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f189ca07-aa4c-49ba-a22a-686d1706b5f5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.16"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015370"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ametam_c" stoichiometry="1"/> <speciesReference constant="true" species="M_15dap_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_5mta_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_na15dap_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MTHFD" metaid="db141efd-85a3-4f46-b622-01f77e5817da" name="methylenetetrahydrofolate_dehydrogenase__NADP_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004790</p> <p>SUBSYSTEM: Folate_Metabolism</p> <p>EC_NUMBER: 1.5.1.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#db141efd-85a3-4f46-b622-01f77e5817da"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004790"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_methf_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MTHFC" metaid="_5fa06a26-166c-4fa3-93a0-1d5698a8b5b3" name="methenyltetrahydrofolate_cyclohydrolase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004790</p> <p>SUBSYSTEM: Folate_Metabolism</p> <p>EC_NUMBER: 3.5.4.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5fa06a26-166c-4fa3-93a0-1d5698a8b5b3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004790"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_methf_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_10fthf_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OHPBAT" metaid="_0b00da5e-5263-4a0f-8d84-3be9ce2e27c3" name="O_Phospho_4_hydroxy_L_threonine_2_oxoglutarate_aminotransferase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021100</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.6.1.52</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0b00da5e-5263-4a0f-8d84-3be9ce2e27c3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.52"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021100"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ohpb_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_phthr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP141pp" metaid="ae795ce0-e733-4557-8d0f-fdd8bc63b4e8" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C14_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 3.1.3.27</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ae795ce0-e733-4557-8d0f-fdd8bc63b4e8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> <speciesReference constant="true" species="M_pgp141_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> <speciesReference constant="true" species="M_pg141_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AP5AH" metaid="_83169f0e-2340-4479-9035-d6c6f4bbc140" name="Ap5A_hydrolase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_019500</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.6.1.61</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_83169f0e-2340-4479-9035-d6c6f4bbc140"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.61"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019500"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ap5a_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM4PH" metaid="_19997018-7609-4bb6-84a0-d013de71994b" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tetrapeptide_beta__1_4_N_acetylglucosaminidase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021350</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_19997018-7609-4bb6-84a0-d013de71994b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021350"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_anhgm4p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_anhm4p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acgam_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TREptspp" metaid="_533ae11a-b048-4dc4-99d8-e11df0190fc8" name="R_TREptspp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment AND No_Assignment2 AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_533ae11a-b048-4dc4-99d8-e11df0190fc8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment2"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_tre_p" stoichiometry="1"/> <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_tre6p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTHOr" metaid="_5200a072-a335-4b28-bb9d-b0006470ef4d" name="glutathione_oxidoreductase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002170</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.8.1.7</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5200a072-a335-4b28-bb9d-b0006470ef4d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.1.7"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002170"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gthox_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gthrd_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACGAMT" metaid="be79aead-a49a-4c67-903c-874f23419c47" name="R_ACGAMT" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004820</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#be79aead-a49a-4c67-903c-874f23419c47"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004820"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_udcpp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_uacgam_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> <speciesReference constant="true" species="M_unaga_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR100x" metaid="f47bdb4a-719a-4aee-8dfa-7596f47b6ed8" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C10_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 1.3.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f47bdb4a-719a-4aee-8dfa-7596f47b6ed8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_tdec2eACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dcaACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ZN2tex" metaid="ab2f5868-2024-44b9-887b-ccf667eb087f" name="R_ZN2tex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ab2f5868-2024-44b9-887b-ccf667eb087f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_zn2_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_zn2_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NO3tex" metaid="e1734774-24bd-4670-b857-68c7d7be46ae" name="nitrate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e1734774-24bd-4670-b857-68c7d7be46ae"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_no3_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_no3_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ANHMK" metaid="_9ad62f87-a3a2-479a-8241-0e7f5a57ad1a" name="1_6_anhydrous_N_Acetylmuramate_kinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015560</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: 2.7.1.170</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9ad62f87-a3a2-479a-8241-0e7f5a57ad1a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.170"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015560"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_anhm_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_acmum6p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MNabc_1" metaid="_04da6e87-f3dc-4788-93c3-c5599974807b" name="R_MNabc_1" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: 3.6.3.35</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_04da6e87-f3dc-4788-93c3-c5599974807b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.35"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_mn2_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_mn2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DCTPD2" metaid="_24b63732-de2d-45f4-a436-4d69eb4e5058" name="dCTP_deaminase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011560</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.5.4.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_24b63732-de2d-45f4-a436-4d69eb4e5058"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011560"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SPMDtex" metaid="_9e27748f-20df-4e06-8900-612653c342f6" name="spermidine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_009840</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: 3.6.3.31</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9e27748f-20df-4e06-8900-612653c342f6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.31"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009840"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_spmd_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_spmd_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE3tex" metaid="_1957b4ed-7e5b-4ac0-bd1f-6b1c41ba35bc" name="iron__III__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1957b4ed-7e5b-4ac0-bd1f-6b1c41ba35bc"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_fe3_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_fe3_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACONTa" metaid="_67a44e2f-c272-4145-a365-5d7992ea2a59" name="aconitase__half_reaction_A__Citrate_hydro_lyase_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_022570 ) OR ( XFCFBP8418_025910 ) OR ( XFCFBP8418_025940 )</p> <p>SUBSYSTEM: Citric_Acid_Cycle</p> <p>EC_NUMBER: 4.2.1.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_67a44e2f-c272-4145-a365-5d7992ea2a59"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022570"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025940"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cit_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_acon_C_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACONTb" metaid="ddd85e75-afbd-47f2-9d5f-910734316be2" name="aconitase__half_reaction_B__Isocitrate_hydro_lyase_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_022570 ) OR ( XFCFBP8418_025910 ) OR ( XFCFBP8418_025940 )</p> <p>SUBSYSTEM: Citric_Acid_Cycle</p> <p>EC_NUMBER: 4.2.1.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ddd85e75-afbd-47f2-9d5f-910734316be2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022570"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025940"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_acon_C_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_icit_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUt2rpp" metaid="_09da3e46-6d4a-456a-b166-a0a0494d351b" name="R_GLUt2rpp" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_000650</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_09da3e46-6d4a-456a-b166-a0a0494d351b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000650"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> <speciesReference constant="true" species="M_glu_L_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR160" metaid="c697ce5f-c134-46b1-b633-71634fdf17b9" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C16_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.100</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c697ce5f-c134-46b1-b633-71634fdf17b9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3opalmACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3hpalmACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_pro_L_e" metaid="_836b4621-e7d2-45ac-9d3a-a6be05a162a6" name="R_EX_pro_L_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_836b4621-e7d2-45ac-9d3a-a6be05a162a6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_pro_L_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR161" metaid="eba2b6d8-8b0f-4470-8be0-509695ddd781" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C16_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.100</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#eba2b6d8-8b0f-4470-8be0-509695ddd781"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3ocpalm9eACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3hcpalm9eACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_K2L4Aabctex" metaid="_8f58e924-4608-434e-9a13-13ca1c09b76f" name="R_K2L4Aabctex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003500 AND XFCFBP8418_003510 AND XFCFBP8418_015320 AND XFCFBP8418_015330</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8f58e924-4608-434e-9a13-13ca1c09b76f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003510"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003500"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015330"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015320"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_kdo2lipid4_XF_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_kdo2lipid4_XF_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TRDR" metaid="_84967ad6-6731-4f9e-bf52-1e7d8087edc7" name="thioredoxin_reductase__NADPH_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003190 AND XFCFBP8418_013260</p> <p>SUBSYSTEM: Oxidative_Phosphorylation</p> <p>EC_NUMBER: 1.8.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_84967ad6-6731-4f9e-bf52-1e7d8087edc7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003190"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CU1Opp" metaid="_2df0f7fa-a7cb-4f3e-a134-2a79c561a3be" name="Cuprous_Oxidase__Cu_1__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015250</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: 1.16.3.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2df0f7fa-a7cb-4f3e-a134-2a79c561a3be"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.16.3.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015250"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cu_p" stoichiometry="4"/> <speciesReference constant="true" species="M_o2_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="4"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cu2_p" stoichiometry="4"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT161" metaid="_8743f99e-7c52-4a20-b3f9-ebd7f69a6f96" name="R_G3PAT161" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.3.1.15</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8743f99e-7c52-4a20-b3f9-ebd7f69a6f96"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_hdeACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_1hdec9eg3p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPKr" metaid="_296dbd06-b104-4ade-8554-7fb5947ef74f" name="polyphosphate_kinase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_012370</p> <p>SUBSYSTEM: Oxidative_Phosphorylation</p> <p>EC_NUMBER: 2.7.4.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_296dbd06-b104-4ade-8554-7fb5947ef74f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012370"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CDPMEK" metaid="_3d262e90-fef9-4e40-9171-7fa2af701e00" name="4__cytidine_5__diphospho__2_C_methyl_D_erythritol_kinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_012890</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.7.1.148</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3d262e90-fef9-4e40-9171-7fa2af701e00"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.148"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_4c2me_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2p4c2me_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT160" metaid="_0d791462-eb70-44f7-9e4d-3b6f0b5916bc" name="R_G3PAT160" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.3.1.15</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0d791462-eb70-44f7-9e4d-3b6f0b5916bc"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_palmACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_1hdecg3p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR40x" metaid="bd1217d3-2f78-4182-a09d-af56c64865f2" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C4_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 1.3.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#bd1217d3-2f78-4182-a09d-af56c64865f2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_but2eACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_butACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALR2" metaid="_1e88fcb4-f43e-4d83-a5ff-c5975edf1664" name="aldose_reductase__methylglyoxal_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_008650</p> <p>SUBSYSTEM: Methylglyoxal_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1e88fcb4-f43e-4d83-a5ff-c5975edf1664"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008650"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_mthgxl_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acetol_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ThDPAT" metaid="_80a4c7df-ab7a-4bca-9b2f-19945f08db4e" name="R_ThDPAT" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_80a4c7df-ab7a-4bca-9b2f-19945f08db4e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thmpp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_athtp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IGPS" metaid="_1bc1f9b0-e8fa-4073-8597-eb6a18fa2e58" name="indole_3_glycerol_phosphate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026720</p> <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> <p>EC_NUMBER: 4.1.1.48</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1bc1f9b0-e8fa-4073-8597-eb6a18fa2e58"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.48"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026720"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_2cpr5p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3ig3p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HPPtex" metaid="_29dee993-41e5-4ed3-aa67-0e67e024cdc7" name="3_hydroxypropionate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_29dee993-41e5-4ed3-aa67-0e67e024cdc7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3hpp_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_3hpp_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INDOLEt2pp" metaid="f09cdaf4-7b4c-4c97-b788-b1022184b24c" name="R_INDOLEt2pp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f09cdaf4-7b4c-4c97-b788-b1022184b24c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> </fbc:and> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_indole_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_indole_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALAALAabcpp" metaid="_1463c0d7-56a1-436e-9e50-55a7b363bff0" name="D_alanyl_D_alanine__DalaDala__transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1463c0d7-56a1-436e-9e50-55a7b363bff0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_alaala_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_alaala_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S4FE4SR" metaid="a39e83c4-8130-4285-a95c-5019026fba5d" name="R_S4FE4SR" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a39e83c4-8130-4285-a95c-5019026fba5d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_sufbcd_2fe2s2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_sufbcd_4fe4s_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SLCYSS" metaid="f39f7141-fb0d-4e12-9e6b-855ed0a8b96a" name="R_SLCYSS" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_006490 ) OR ( XFCFBP8418_010980 )</p> <p>SUBSYSTEM: Cystein_Metabolism</p> <p>EC_NUMBER: 2.5.1.47</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f39f7141-fb0d-4e12-9e6b-855ed0a8b96a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.47"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010980"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006490"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_tsul_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acser_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> <speciesReference constant="true" species="M_scys_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2Stex" metaid="_9a4a4643-63be-43f7-8b3a-6c7f06817bc9" name="Hydrogen_sulfide_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: Spontaneous</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9a4a4643-63be-43f7-8b3a-6c7f06817bc9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2s_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2s_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S4FE4ST" metaid="_2a1716f0-15c5-4cc4-99a2-b839a2e051ed" name="R_S4FE4ST" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950 AND XFCFBP8418_012150</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2a1716f0-15c5-4cc4-99a2-b839a2e051ed"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012150"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_sufbcd_4fe4s_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="4"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_4fe4s_c" stoichiometry="1"/> <speciesReference constant="true" species="M_sufbcd_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TREtex" metaid="bbe09276-0f1b-463f-a7f8-af3a0e0888f4" name="trehalose_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#bbe09276-0f1b-463f-a7f8-af3a0e0888f4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_tre_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_tre_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_ca2_e" metaid="_5cb9433a-1034-41dc-9665-2169a037d64e" name="R_EX_ca2_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5cb9433a-1034-41dc-9665-2169a037d64e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_ca2_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EDTXS3XF" metaid="_0d0e9caf-e261-478c-aa35-a28ea1bbabe7" name="R_EDTXS3XF" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004060 ) OR ( XFCFBP8418_015020 )</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.3.1.-</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0d0e9caf-e261-478c-aa35-a28ea1bbabe7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.-"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004060"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015020"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3hddecACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_kdo2lipid4HL_XF_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_kdo2lipidA_XF_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA161abcpp" metaid="c05fbc20-f6ee-4d43-a4da-d019b0a17c45" name="phosphatidate_transport_via_ABC_system__n_C16_1__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c05fbc20-f6ee-4d43-a4da-d019b0a17c45"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pa161_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pa161_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR140" metaid="_3f7cf43a-bec4-4e63-bcc4-6321a02571c1" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C14_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.100</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3f7cf43a-bec4-4e63-bcc4-6321a02571c1"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3omrsACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3hmrsACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR180tipp" metaid="bdba66cf-d220-480a-884e-50c672f09150" name="R_12DGR180tipp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#bdba66cf-d220-480a-884e-50c672f09150"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_12dgr180_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_12dgr180_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GMPS2" metaid="_8fe6e735-7903-4534-8398-e8ee0a6624c6" name="GMP_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004770</p> <p>SUBSYSTEM: Purine_biosynthesis</p> <p>EC_NUMBER: 6.3.5.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8fe6e735-7903-4534-8398-e8ee0a6624c6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.5.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004770"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_xmp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_gmp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR141" metaid="_49728e10-3c78-43f6-a132-ea7cc9eb9fbb" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C14_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.100</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_49728e10-3c78-43f6-a132-ea7cc9eb9fbb"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3ocmrs7eACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3hcmrs7eACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL180t2pp" metaid="eb1f72a2-ac74-4a5c-b7bc-9b29c71d87f6" name="fatty_acid_CoA_ligase__octadecanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.2.1.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#eb1f72a2-ac74-4a5c-b7bc-9b29c71d87f6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ocdca_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_stcoa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PYAM5POr" metaid="_6a4ff0cf-2525-49ac-8234-77e07699f8b0" name="pyridoxamine_5__phosphate_oxidase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004150</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.4.3.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6a4ff0cf-2525-49ac-8234-77e07699f8b0"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.4.3.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004150"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pyam5p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pydx5p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUabcpp" metaid="_8e7235ba-0cae-487d-9a6c-5324972d6fdf" name="L_glutamate_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007600</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: 3.6.3.21</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8e7235ba-0cae-487d-9a6c-5324972d6fdf"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.21"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007600"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glu_L_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT140" metaid="_28833569-f07f-40e5-b678-fa48db25b28a" name="R_G3PAT140" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.3.1.15</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_28833569-f07f-40e5-b678-fa48db25b28a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_myrsACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_1tdecg3p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SO3tex" metaid="_18616028-27c7-4c6b-af75-6cc5f4b1bf92" name="R_SO3tex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_18616028-27c7-4c6b-af75-6cc5f4b1bf92"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_so3_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_so3_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT141" metaid="_0ecee537-dc8c-47f3-83c2-37fde71aca86" name="R_G3PAT141" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.3.1.15</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0ecee537-dc8c-47f3-83c2-37fde71aca86"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_tdeACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_1tdec7eg3p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_zn2_e" metaid="_4159c7ec-d404-4f29-8f77-4aeb035a94d3" name="R_EX_zn2_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4159c7ec-d404-4f29-8f77-4aeb035a94d3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_zn2_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ICITt_kt" metaid="f31ef274-0ba9-42bf-8ec3-36b15d0f53ae" name="R_ICITt_kt" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025570</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f31ef274-0ba9-42bf-8ec3-36b15d0f53ae"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025570"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> <speciesReference constant="true" species="M_icit_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_icit_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS161pp" metaid="_330389ae-5902-43a7-bbb8-8539ca5d20f6" name="cardiolipin_synthase__periplasmic__n_C16_1_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_330389ae-5902-43a7-bbb8-8539ca5d20f6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pg161_p" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> <speciesReference constant="true" species="M_clpn161_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2Otpp" metaid="_428d2359-fbda-446b-968a-347363e63c46" name="H2O_transport_via_diffusion__periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_428d2359-fbda-446b-968a-347363e63c46"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYOX3" metaid="f55a5957-c961-408b-8b81-cefe28454487" name="R_GLYOX3" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023680</p> <p>SUBSYSTEM: Methylglyoxal_Metabolism</p> <p>EC_NUMBER: 4.2.1.130</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f55a5957-c961-408b-8b81-cefe28454487"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.130"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023680"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_mthgxl_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_lac_D_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_mg2_e" metaid="_7aad2af7-c5ef-42cf-b7dc-a845bf767d19" name="R_EX_mg2_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7aad2af7-c5ef-42cf-b7dc-a845bf767d19"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_mg2_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHGLYH" metaid="_9db97772-9661-4bce-9fe2-80cb8f3ee38f" name="R_DHGLYH" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9db97772-9661-4bce-9fe2-80cb8f3ee38f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dhgly_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glx_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DB4PS" metaid="_421cf543-364a-4062-846b-f8f45f1a69a1" name="3_4_Dihydroxy_2_butanone_4_phosphate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_009770</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 4.1.99.12</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_421cf543-364a-4062-846b-f8f45f1a69a1"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.99.12"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009770"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ru5p_D_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_db4p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDCP2App" metaid="_80658f59-ff34-4f09-b691-7484e8d693a4" name="murein_L_D_carboxypeptidase__murein5p5p___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> <p>SUBSYSTEM: Murein_Biosynthesis</p> <p>EC_NUMBER: 3.4.17.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_80658f59-ff34-4f09-b691-7484e8d693a4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_murein5p3p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_alaala_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACACT1r" metaid="_87eb8bca-e417-4d10-8773-fb67586b7b3c" name="acetyl_CoA_C_acetyltransferase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 2.3.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_87eb8bca-e417-4d10-8773-fb67586b7b3c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_accoa_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_aacoa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP181pp" metaid="_27e14e08-7e2a-4bd7-b2c1-f25770fdc7b2" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C18_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 3.1.3.27</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_27e14e08-7e2a-4bd7-b2c1-f25770fdc7b2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pgp181_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> <speciesReference constant="true" species="M_pg181_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FRUpts2" metaid="_49070d4c-f0be-4db8-8494-ed3d451df624" name="R_FRUpts2" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_49070d4c-f0be-4db8-8494-ed3d451df624"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_fru_e" stoichiometry="1"/> <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACHBS" metaid="_789c92ae-6b7b-4d83-ad40-4db45c2628ad" name="2_aceto_2_hydroxybutanoate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_017900 AND XFCFBP8418_017910</p> <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> <p>EC_NUMBER: 2.2.1.6</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_789c92ae-6b7b-4d83-ad40-4db45c2628ad"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.2.1.6"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017910"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017900"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2obut_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_2ahbut_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHTNABCt" metaid="_66ab3ddb-b37e-4479-a284-4e4856416781" name="R_CHTNABCt" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_66ab3ddb-b37e-4479-a284-4e4856416781"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_chtbs_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_chtbs_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA120abcpp" metaid="e5726ea6-018f-4fa7-a709-2a4af8810ec5" name="phosphatidate_transport_via_ABC_system__n_C12_0__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e5726ea6-018f-4fa7-a709-2a4af8810ec5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pa120_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pa120_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HISDr" metaid="_2d6e0f6b-14f9-4471-895d-0846b763cb9f" name="histidase_r" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Histidine_Metabolism</p> <p>EC_NUMBER: 4.3.1.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2d6e0f6b-14f9-4471-895d-0846b763cb9f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.1.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_his_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_urcan_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM3Pt2pp" metaid="_18440f86-dad4-41f8-8cfb-e015c27965aa" name="GlcNAc_anhMurNAc_tripeptide_transport_in_via_proton_symport__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015550</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_18440f86-dad4-41f8-8cfb-e015c27965aa"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015550"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> <speciesReference constant="true" species="M_anhgm3p_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_anhgm3p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ANPRT" metaid="e154ca2e-3890-47e1-aea1-87fc24c96233" name="anthranilate_phosphoribosyltransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026730</p> <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> <p>EC_NUMBER: 2.4.2.18</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e154ca2e-3890-47e1-aea1-87fc24c96233"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.18"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026730"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_anth_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pran_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AHSERL3" metaid="_28ebcd3c-2de8-4221-9952-56d90ca3e156" name="R_cysteine_synthase__Selenide_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_006490 ) OR ( XFCFBP8418_010590 ) OR ( XFCFBP8418_010980 )</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_28ebcd3c-2de8-4221-9952-56d90ca3e156"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010590"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010980"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006490"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_acser_c" stoichiometry="1"/> <speciesReference constant="true" species="M_seln_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> <speciesReference constant="true" species="M_selcys_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AHSERL2" metaid="_1e0210a1-ddb2-4251-99e6-242396b57ff1" name="R_AHSERL2" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010590</p> <p>SUBSYSTEM: Cystein_Metabolism</p> <p>EC_NUMBER: 2.5.1.49</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1e0210a1-ddb2-4251-99e6-242396b57ff1"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.49"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010590"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_achms_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2s_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_hcys_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G2PP" metaid="_889da4e8-8566-4f3f-acb8-97291ae9294b" name="glycerol_2_phosphate_phosphatase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005240</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 3.1.3.19</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_889da4e8-8566-4f3f-acb8-97291ae9294b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/ 3.1.3.19"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005240"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc2p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glyc_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PHEMEAS" metaid="_4dff57e7-ed27-4653-9ce4-88dfebdec7d8" name="putative_hemeA_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003990</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4dff57e7-ed27-4653-9ce4-88dfebdec7d8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003990"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hemeO_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_hemeA_1_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_fe2_e" metaid="ff3238a4-c949-47c0-91fd-b6300ab90ff7" name="R_EX_fe2_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ff3238a4-c949-47c0-91fd-b6300ab90ff7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_fe2_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR120" metaid="_73a75cd3-61a7-4f57-9e50-0270d6928984" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C12_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.100</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_73a75cd3-61a7-4f57-9e50-0270d6928984"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3oddecACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3hddecACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FTHFD" metaid="_97dbb6ec-f60d-41d3-9872-a30786df7ee9" name="formyltetrahydrofolate_deformylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_017820</p> <p>SUBSYSTEM: Folate_Metabolism</p> <p>EC_NUMBER: 3.5.1.10</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_97dbb6ec-f60d-41d3-9872-a30786df7ee9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.10"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017820"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_10fthf_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR121" metaid="_94014400-7692-4e52-a4cd-e4a5ede8c869" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C12_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.100</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_94014400-7692-4e52-a4cd-e4a5ede8c869"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3ocddec5eACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3hcddec5eACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SUCCt3pp" metaid="_11a2ab15-ec29-4b32-a8f2-63b22bb92ef7" name="R_SUCCt3pp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_11a2ab15-ec29-4b32-a8f2-63b22bb92ef7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_succ_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA141" metaid="_8f1551cd-700d-4fa8-a5ac-06562bd1596f" name="Phosphatidylglycerol_synthase__n_C14_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.8.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8f1551cd-700d-4fa8-a5ac-06562bd1596f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cdpdtdec7eg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pgp141_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HIStex" metaid="d880ccde-0889-4968-9fb8-f43fb3d638f2" name="L_histidine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d880ccde-0889-4968-9fb8-f43fb3d638f2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_his_L_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_his_L_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA140" metaid="_0c38e552-5295-476b-b889-e73a205647b9" name="Phosphatidylglycerol_synthase__n_C14_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.8.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0c38e552-5295-476b-b889-e73a205647b9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cdpdtdecg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pgp140_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LPSS1XF" metaid="faf631a7-983a-4d80-8094-afc7f95450db" name="R_LPSS1XF" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#faf631a7-983a-4d80-8094-afc7f95450db"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gdpmann_c" stoichiometry="4"/> <speciesReference constant="true" species="M_udpxyl_c" stoichiometry="2"/> <speciesReference constant="true" species="M_kdo2lipidA_XF_c" stoichiometry="4"/> <speciesReference constant="true" species="M_udpgalur_c" stoichiometry="53"/> <speciesReference constant="true" species="M_udpg_c" stoichiometry="15"/> <speciesReference constant="true" species="M_dtdprmn_c" stoichiometry="19"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_core_kdo2lip6_XF_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dtdp_c" stoichiometry="19"/> <speciesReference constant="true" species="M_gdp_c" stoichiometry="4"/> <speciesReference constant="true" species="M_udp_c" stoichiometry="70"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INSDH" metaid="f55db845-14e8-4232-a52f-d39c0aa4daa4" name="2_keto_myo_inositol_dehydratase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 4.2.1.44</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f55db845-14e8-4232-a52f-d39c0aa4daa4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.44"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_2ins_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dkdepiins_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL181t2pp" metaid="_4e19d812-c78a-431b-a118-69204652bfc4" name="fatty_acid_CoA_ligase__octadecenoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.2.1.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4e19d812-c78a-431b-a118-69204652bfc4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ocdcea_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_odecoa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPTHpp" metaid="cc7759f9-512e-4135-9b99-a3c70d664f0c" name="R_PPTHpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006010</p> <p>SUBSYSTEM: Nucleotides_degradation</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#cc7759f9-512e-4135-9b99-a3c70d664f0c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006010"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ppt_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RBFSb" metaid="e3ead820-9549-47da-8f2e-b7b2d114056b" name="riboflavin_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_009760</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.5.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e3ead820-9549-47da-8f2e-b7b2d114056b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009760"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dmlz_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ribflv_c" stoichiometry="1"/> <speciesReference constant="true" species="M_4r5au_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_ni2_e" metaid="e41c8663-235b-4f95-b953-a39c06455791" name="R_EX_ni2_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e41c8663-235b-4f95-b953-a39c06455791"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_ni2_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MECDPS" metaid="_7bbec3fd-1e0b-4758-95bf-4186e227c611" name="2_C_methyl_D_erythritol_2_4_cyclodiphosphate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_022190</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 4.6.1.12</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7bbec3fd-1e0b-4758-95bf-4186e227c611"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.6.1.12"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022190"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_2p4c2me_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_2mecdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OXOGAH" metaid="_148cbb5c-87ce-48fd-80c2-b6eb893a5bc2" name="R_OXOGAH" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005030</p> <p>SUBSYSTEM: Methionine_Metabolism</p> <p>EC_NUMBER: 3.5.1.111</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_148cbb5c-87ce-48fd-80c2-b6eb893a5bc2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.111"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005030"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_2ogm_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_6PDDGLUCA" metaid="aabd4ea8-d600-4f18-98d7-23aadf0eab7f" name="6_phospho_5_dehydro_2_deoxy_D_gluconate_aldolase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 4.1.2.29</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#aabd4ea8-d600-4f18-98d7-23aadf0eab7f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.29"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_6pddgluc_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_msa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS181pp" metaid="_5aebb49f-ce41-48b5-abac-a2d8f4ec0c5d" name="cardiolipin_synthase__periplasmic__n_C18_1_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5aebb49f-ce41-48b5-abac-a2d8f4ec0c5d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pg181_p" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> <speciesReference constant="true" species="M_clpn181_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HMBS" metaid="_464f1d0a-4d4a-4d95-95d5-4d7134b70ca8" name="hydroxymethylbilane_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_018480</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.5.1.61</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_464f1d0a-4d4a-4d95-95d5-4d7134b70ca8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.61"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018480"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppbng_c" stoichiometry="4"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_hmbil_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="4"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RBFSa" metaid="aefd8b19-116a-4449-8353-ad4f3ae9953a" name="riboflavin_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_009780</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.5.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#aefd8b19-116a-4449-8353-ad4f3ae9953a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009780"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_db4p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_4r5au_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dmlz_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CU2tpp" metaid="_6e01cc85-1914-4f02-916d-8d6a5976fbb8" name="copper_transport_in_via_permease__no_H__" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6e01cc85-1914-4f02-916d-8d6a5976fbb8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cu2_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cu2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LIPAabcpp" metaid="_9ca89924-0cf9-4d37-98d9-9597dc5d2f52" name="R_LIPAabcpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9ca89924-0cf9-4d37-98d9-9597dc5d2f52"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_kdo2lipidA_XF_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_kdo2lipidA_XF_p" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PAPSR2" metaid="_94d14f04-db64-4886-9e29-e7c1d808685f" name="R_PAPSR2" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_002720 AND XFCFBP8418_012410 ) OR ( XFCFBP8418_002720 AND XFCFBP8418_013020 ) OR ( XFCFBP8418_002720 AND XFCFBP8418_021660 ) OR ( or )</p> <p>SUBSYSTEM: Cysteine_Metabolism</p> <p>EC_NUMBER: 1.8.4.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_94d14f04-db64-4886-9e29-e7c1d808685f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.4.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002720"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012410"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002720"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021660"/> </fbc:and> <fbc:geneProductRef fbc:geneProduct="or"/> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002720"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013020"/> </fbc:and> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_paps_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_pap_c" stoichiometry="1"/> <speciesReference constant="true" species="M_so3_c" stoichiometry="1"/> <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HXPRT" metaid="e06109e7-8772-41b8-97c4-aad71904ef31" name="hypoxanthine_phosphoribosyltransferase__Hypoxanthine_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021340</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.4.2.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e06109e7-8772-41b8-97c4-aad71904ef31"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021340"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_hxan_c" stoichiometry="1"/> <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MTAP" metaid="_3a4a1688-0e11-4ed9-96ac-fb9352ef8b1a" name="R_MTAP" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021330</p> <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> <p>EC_NUMBER: 2.4.2.28</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3a4a1688-0e11-4ed9-96ac-fb9352ef8b1a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.28"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021330"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_5mta_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ade_c" stoichiometry="1"/> <speciesReference constant="true" species="M_5mdr1p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP161pp" metaid="ebb9f9f4-9f9d-4cbf-9dd9-d70d2bad7788" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C16_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 3.1.3.27</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ebb9f9f4-9f9d-4cbf-9dd9-d70d2bad7788"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pgp161_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> <speciesReference constant="true" species="M_pg161_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OMPHHX" metaid="d1515964-e28b-41f8-9aaf-420a0992a400" name="2_octaprenyl_6_methoxyphenol_hydroxylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010930</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d1515964-e28b-41f8-9aaf-420a0992a400"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010930"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_2omph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_o2_c" stoichiometry="0.5"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_2ombzl_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EDD" metaid="_669cb284-2f5e-4613-bf55-8d2e43585a6b" name="6_phosphogluconate_dehydratase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024710</p> <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> <p>EC_NUMBER: 4.2.1.12</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_669cb284-2f5e-4613-bf55-8d2e43585a6b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.12"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_6pgc_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_2ddg6p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FRUptspp" metaid="_3b1cf144-0566-4f11-a09e-1c5e373c4a7a" name="D_fructose_transport_via_PEP_Pyr_PTS__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3b1cf144-0566-4f11-a09e-1c5e373c4a7a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_fru_p" stoichiometry="1"/> <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_f1p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EDA" metaid="c0c41082-29b9-4aac-8e49-b75631a23d96" name="2_dehydro_3_deoxy_phosphogluconate_aldolase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024720</p> <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> <p>EC_NUMBER: 4.1.2.14</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c0c41082-29b9-4aac-8e49-b75631a23d96"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.14"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024720"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_2ddg6p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM4Pt2pp" metaid="cd579a5d-365c-4fdc-8ab1-8c1302bed8f1" name="GlcNAc_anhMurNAc_tetrapeptide_transport_in_via_proton_symport__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015550</p> <p>SUBSYSTEM: Murein_Recycling</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#cd579a5d-365c-4fdc-8ab1-8c1302bed8f1"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015550"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_anhgm4p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROT_LesA_BioS" metaid="cbdde19f-0825-4050-8f2c-5a4159aa0680" name="R_PROT_LesA_BioS" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011400</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#cbdde19f-0825-4050-8f2c-5a4159aa0680"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011400"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_asptrna_c" stoichiometry="23"/> <speciesReference constant="true" species="M_glutrna_c" stoichiometry="17"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1997.72"/> <speciesReference constant="true" species="M_asntrna_c" stoichiometry="37"/> <speciesReference constant="true" species="M_phetrna_c" stoichiometry="22"/> <speciesReference constant="true" species="M_glytrna_c" stoichiometry="59"/> <speciesReference constant="true" species="M_glntrna_c" stoichiometry="34"/> <speciesReference constant="true" species="M_cystrna_c" stoichiometry="3"/> <speciesReference constant="true" species="M_trptrna_c" stoichiometry="11"/> <speciesReference constant="true" species="M_protrna_c" stoichiometry="28"/> <speciesReference constant="true" species="M_valtrna_c" stoichiometry="25"/> <speciesReference constant="true" species="M_sertrna_c" stoichiometry="47"/> <speciesReference constant="true" species="M_argtrna_c" stoichiometry="21"/> <speciesReference constant="true" species="M_thrtrna_c" stoichiometry="63"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1997.72"/> <speciesReference constant="true" species="M_alatrna_c" stoichiometry="60"/> <speciesReference constant="true" species="M_iletrna_c" stoichiometry="29"/> <speciesReference constant="true" species="M_lystrna_c" stoichiometry="15"/> <speciesReference constant="true" species="M_leutrna_c" stoichiometry="58"/> <speciesReference constant="true" species="M_mettrna_c" stoichiometry="7"/> <speciesReference constant="true" species="M_tyrtrna_c" stoichiometry="28"/> <speciesReference constant="true" species="M_histrna_c" stoichiometry="14"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_trnahis_c" stoichiometry="14"/> <speciesReference constant="true" species="M_LesA_c" stoichiometry="1"/> <speciesReference constant="true" species="M_trnaile_c" stoichiometry="29"/> <speciesReference constant="true" species="M_trnaarg_c" stoichiometry="21"/> <speciesReference constant="true" species="M_trnathr_c" stoichiometry="63"/> <speciesReference constant="true" species="M_trnaala_c" stoichiometry="60"/> <speciesReference constant="true" species="M_trnapro_c" stoichiometry="28"/> <speciesReference constant="true" species="M_trnamet_c" stoichiometry="7"/> <speciesReference constant="true" species="M_trnaser_c" stoichiometry="47"/> <speciesReference constant="true" species="M_trnacys_c" stoichiometry="3"/> <speciesReference constant="true" species="M_trnaasp_c" stoichiometry="23"/> <speciesReference constant="true" species="M_trnatrp_c" stoichiometry="11"/> <speciesReference constant="true" species="M_trnaasn_c" stoichiometry="37"/> <speciesReference constant="true" species="M_trnagln_c" stoichiometry="34"/> <speciesReference constant="true" species="M_trnaphe_c" stoichiometry="22"/> <speciesReference constant="true" species="M_trnatyr_c" stoichiometry="28"/> <speciesReference constant="true" species="M_trnagly_c" stoichiometry="59"/> <speciesReference constant="true" species="M_trnaval_c" stoichiometry="25"/> <speciesReference constant="true" species="M_trnaglu_c" stoichiometry="17"/> <speciesReference constant="true" species="M_trnaleu_c" stoichiometry="58"/> <speciesReference constant="true" species="M_trnalys_c" stoichiometry="15"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1997.72"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1997.72"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AMPTASECG" metaid="_9c0dc877-c529-45e2-ab06-fabb4fc1ce55" name="alanyl_aminopeptidase__cys_gly_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002800</p> <p>SUBSYSTEM: Cysteine_Metabolism</p> <p>EC_NUMBER: 3.4.11.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9c0dc877-c529-45e2-ab06-fabb4fc1ce55"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.11.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002800"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cgly_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NH4tpp" metaid="f64fe1cf-9c3a-49ec-b329-1981fc7ebfe7" name="ammonia_reversible_transport__periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_017690</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f64fe1cf-9c3a-49ec-b329-1981fc7ebfe7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017690"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nh4_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SHCHD2" metaid="_19647eb7-b93d-447a-88e3-c64aa879bebd" name="R_SHCHD2" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010970</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.3.1.76</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_19647eb7-b93d-447a-88e3-c64aa879bebd"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.76"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010970"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dscl_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_scl_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CU2_bd_CopA" metaid="_14797287-fd1a-4dfc-b300-9daffa59e830" name="Copper_sequestration_by_cop_system" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015250</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_14797287-fd1a-4dfc-b300-9daffa59e830"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015250"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cu2_p" stoichiometry="11"/> <speciesReference constant="true" species="M_CopA_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_11cu2s_CopA_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THBPTD" metaid="_8622fea6-35d5-4e81-9aef-5a66f3939348" name="R_THBPTD" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_012500</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 4.2.1.96</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8622fea6-35d5-4e81-9aef-5a66f3939348"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.96"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012500"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_thbpt4acam_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dhbpt_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYt2pp" metaid="_7f478a86-dcba-4b43-bdfa-bf36dbd733b1" name="R_GLYt2pp" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7f478a86-dcba-4b43-bdfa-bf36dbd733b1"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gly_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LPSabctpp" metaid="_458e980d-70fa-448b-ac26-8d00fb518e9a" name="Oantigen_core_kdo_lipidA_Ralstonia_solanacearum_specific_LPS_transport_via_ABC_system_periplasm_to_extracellular_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_458e980d-70fa-448b-ac26-8d00fb518e9a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_OLPS_XF_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_OLPS_XF_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EDTXS1XF" metaid="cfeb2f99-37cd-4276-ac54-5a875d5bdb62" name="R_EDTXS1XF" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004060 ) OR ( XFCFBP8418_015020 )</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.3.1.-</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#cfeb2f99-37cd-4276-ac54-5a875d5bdb62"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.-"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004060"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015020"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3hddecACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_kdo2lipid4_XF_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_kdo2lipid4HL_XF_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SERAT" metaid="f5fb0f47-8e33-4507-9a9b-1ff077874e4e" name="serine_O_acetyltransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Cysteine_Metabolism</p> <p>EC_NUMBER: 2.3.1.30</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f5fb0f47-8e33-4507-9a9b-1ff077874e4e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.30"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acser_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPND" metaid="ac05b5bb-aec3-4b65-899f-cd0db43b95f1" name="prephenate_dehydrogenase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021200</p> <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> <p>EC_NUMBER: 1.3.1.12</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ac05b5bb-aec3-4b65-899f-cd0db43b95f1"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.12"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021200"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pphn_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_34hpp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GK1" metaid="_64b44538-0b98-4e14-9b37-8a43ee722e14" name="guanylate_kinase__GMP_ATP_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002650</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 2.7.4.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_64b44538-0b98-4e14-9b37-8a43ee722e14"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002650"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LEUabcpp" metaid="_2f7463c0-9137-4d02-a616-6b7f9216f12f" name="L_leucine_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2f7463c0-9137-4d02-a616-6b7f9216f12f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_leu_L_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_leu_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR100" metaid="_7c30b382-8242-4ab9-bd3e-8a33ee49fe78" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C10_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.100</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7c30b382-8242-4ab9-bd3e-8a33ee49fe78"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3odecACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3hdecACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA120" metaid="dd342e79-834f-45bb-b41c-ea27503d1749" name="Phosphatidylglycerol_synthase__n_C12_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.8.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#dd342e79-834f-45bb-b41c-ea27503d1749"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cdpdddecg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pgp120_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT181" metaid="e2a02f7a-7ed8-4efb-a6f8-c77334a40727" name="R_G3PAT181" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.3.1.15</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e2a02f7a-7ed8-4efb-a6f8-c77334a40727"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_octeACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_1odec11eg3p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDP" metaid="a30b4cb1-c39f-485d-b604-4468b4e83d36" name="thiamin_pyrophosphatase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003250</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 3.6.1.15</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a30b4cb1-c39f-485d-b604-4468b4e83d36"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.15"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003250"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thmpp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thmmp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE2abcpp" metaid="ee7de55c-cb84-47e5-97b0-5eb5fa96d008" name="iron__II__transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_009910</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ee7de55c-cb84-47e5-97b0-5eb5fa96d008"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fe2_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fe2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ABUTt2pp" metaid="_0873f427-e010-46ae-a840-180cb283a6e9" name="4_aminobutyrate_transport_in_via_proton_symport__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0873f427-e010-46ae-a840-180cb283a6e9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_4abut_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_4abut_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADCL" metaid="_421e0e7b-eb65-4739-b2eb-75149316d48e" name="R_ADCL" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_014810</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 4.1.3.38</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_421e0e7b-eb65-4739-b2eb-75149316d48e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.3.38"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014810"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_4adcho_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_4abz_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MSO3tex" metaid="bd3c6ae0-56d8-4f23-987a-2cb585fdf959" name="methanesulfonate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_007680 ) OR ( XFCFBP8418_009840 )</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#bd3c6ae0-56d8-4f23-987a-2cb585fdf959"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009840"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_mso3_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_mso3_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DDGLK" metaid="_5fbef3c5-b93b-4d9c-984d-f6e1c4771e76" name="2_dehydro_3_deoxygluconokinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_018640</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 2.7.1.45</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5fbef3c5-b93b-4d9c-984d-f6e1c4771e76"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.45"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018640"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_2ddglcn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2ddg6p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PStex" metaid="_05abaed6-9268-45a3-a535-ae3145a6cf90" name="glycerophosphserine_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_05abaed6-9268-45a3-a535-ae3145a6cf90"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_g3ps_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_g3ps_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DNMPPA" metaid="d68c6357-31ae-4f64-b842-d623ff70f374" name="R_DNMPPA" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d68c6357-31ae-4f64-b842-d623ff70f374"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dhpmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dhnpt_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OCTDPS" metaid="_7b300b6d-9a30-4887-843a-eaf6b31bb960" name="Octaprenyl_pyrophosphate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003680</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.5.1.90</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7b300b6d-9a30-4887-843a-eaf6b31bb960"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.90"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003680"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_frdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ipdp_c" stoichiometry="5"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_octdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="5"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT180" metaid="_38af430f-3a01-4373-8d04-5804967f5bee" name="R_G3PAT180" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.3.1.15</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_38af430f-3a01-4373-8d04-5804967f5bee"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ocdcaACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_1odecg3p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADCS" metaid="ffa3c12c-7325-455c-98a8-f7a8129c38bf" name="4_amino_4_deoxychorismate_synthase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026740 AND XFCFBP8418_026750</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.6.1.85</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ffa3c12c-7325-455c-98a8-f7a8129c38bf"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.85"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026750"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026740"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_chor_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_4adcho_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CAT" metaid="fa3bfb33-f625-44fa-871f-05e8405fde85" name="catalase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020430</p> <p>SUBSYSTEM: Superoxide_radicals_degradation</p> <p>EC_NUMBER: 1.11.1.6</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#fa3bfb33-f625-44fa-871f-05e8405fde85"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.11.1.6"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020430"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o2_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDCP1pp" metaid="_6de2d860-2eac-437b-98f7-61ce1498d5ea" name="murein_D_D_carboxypeptidase__murein5px4p___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_018620 ) OR ( XFCFBP8418_020420 )</p> <p>SUBSYSTEM: Murein_Biosynthesis</p> <p>EC_NUMBER: 3.4.16.4</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6de2d860-2eac-437b-98f7-61ce1498d5ea"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.16.4"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020420"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_murein5px4p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_murein4px4p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PIabcpp" metaid="_9b5da76b-7854-44f0-bb9b-bd39c77a57b5" name="sn_glycerol_3_phosphoethanolamine_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9b5da76b-7854-44f0-bb9b-bd39c77a57b5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_g3pi_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_g3pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRA2r" metaid="_20397b20-c6a8-4d60-ab1f-8c57d84dbfd5" name="R_THRA2r" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> <p>EC_NUMBER: 4.1.2.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_20397b20-c6a8-4d60-ab1f-8c57d84dbfd5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_athr_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> <speciesReference constant="true" species="M_acald_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA140abcpp" metaid="_73451555-2031-45ca-8d40-f38b9705fd4c" name="phosphatidate_transport_via_ABC_system__n_C14_0__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_73451555-2031-45ca-8d40-f38b9705fd4c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pa140_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pa140_p" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NADPPPS" metaid="_8642b33f-f57f-4f89-bf54-a52a7bba4577" name="R_NADPPPS" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8642b33f-f57f-4f89-bf54-a52a7bba4577"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GF6PTAr" metaid="_55795965-f6a5-4dfd-9b76-36e12c5fb995" name="Glutamine_fructose_6_phosphate_transaminase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015350</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.6.1.16</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_55795965-f6a5-4dfd-9b76-36e12c5fb995"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.16"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015350"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gam6p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE181abcpp" metaid="d46ef64c-487c-497d-8283-03e2e7a2d0ac" name="phosphatidylethanolamine_transport_via_ABC_system__n_C18_1__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d46ef64c-487c-497d-8283-03e2e7a2d0ac"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pe181_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pe181_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GALU" metaid="_544cd7d9-e0e5-4a34-b011-adef2e62a0c5" name="UTP_glucose_1_phosphate_uridylyltransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004800</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 2.7.7.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_544cd7d9-e0e5-4a34-b011-adef2e62a0c5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004800"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_g1p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udpg_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OHPHM" metaid="_4a26de74-3974-41fa-b3f6-bcec426c17ad" name="2_octaprenyl_6_hydroxyphenol_methylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005180</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.1.1.222</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_4a26de74-3974-41fa-b3f6-bcec426c17ad"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.222"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005180"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2ohph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_2omph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ahcys_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_orn_e" metaid="_088ee4bb-574c-4b38-a9c4-209816251311" name="R_EX_orn_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_088ee4bb-574c-4b38-a9c4-209816251311"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_orn_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GMAND" metaid="de5417ed-2086-4f4b-9e9f-6c417ab0def2" name="GDP_D_mannose_dehydratase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006460</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 4.2.1.47</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#de5417ed-2086-4f4b-9e9f-6c417ab0def2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.47"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006460"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gdpmann_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gdpddman_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_asp_L_e" metaid="_76bf29d6-ef42-4e37-92ff-f6a1d3c6af71" name="R_EX_asp_L_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_76bf29d6-ef42-4e37-92ff-f6a1d3c6af71"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_asp_L_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PFK" metaid="_06084ea6-8cc7-45f2-a738-c1a406c8b1c5" name="phosphofructokinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026080</p> <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> <p>EC_NUMBER: 2.7.1.11</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_06084ea6-8cc7-45f2-a738-c1a406c8b1c5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.11"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026080"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fdp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RZ5PP" metaid="ee88117f-9d1b-4189-a13b-519ac6453e68" name="alpha_ribazole_5_phosphate_phosphatase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_016540</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 3.1.3.73</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ee88117f-9d1b-4189-a13b-519ac6453e68"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.73"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016540"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_5prdmbz_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_rdmbzi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SHKK" metaid="_2d9d7940-36f9-4f52-b34a-728428042344" name="R_SHKK" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004160</p> <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> <p>EC_NUMBER: 2.7.1.71</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2d9d7940-36f9-4f52-b34a-728428042344"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.71"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004160"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_skm_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_skm5p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ILETRS" metaid="_7a91f907-41a1-4510-9097-94a0db7c8bd8" name="Isoleucyl_tRNA_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004680</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 6.1.1.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7a91f907-41a1-4510-9097-94a0db7c8bd8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004680"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_trnaile_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ile_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_iletrna_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OAADC" metaid="_76151d46-e9d6-4024-8dab-ff726b55cd2d" name="oxaloacetate_decarboxylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024720</p> <p>SUBSYSTEM: Pyruvate_Metabolism</p> <p>EC_NUMBER: 4.1.1.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_76151d46-e9d6-4024-8dab-ff726b55cd2d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024720"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA180" metaid="_111dd9ad-2aa2-4381-b911-a711ed7d11c7" name="Phosphatidylglycerol_synthase__n_C18_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.8.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_111dd9ad-2aa2-4381-b911-a711ed7d11c7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cdpdodecg_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pgp180_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CPPPGO" metaid="d2e24363-f133-494a-a677-1b18d8215636" name="coproporphyrinogen_oxidase__O2_required_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_014340</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.3.3.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d2e24363-f133-494a-a677-1b18d8215636"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.3.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014340"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_cpppg3_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="2"/> <speciesReference constant="true" species="M_pppg9_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SELGTHR3" metaid="_107a69f9-5d98-4b62-a714-dc37ee6216be" name="R_SELGTHR3" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_107a69f9-5d98-4b62-a714-dc37ee6216be"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gslnt_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gthrd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_seln_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALATA_L2" metaid="_45b027a6-2c7d-47ef-8c0d-f5acf5c34a3d" name="alanine_transaminase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_45b027a6-2c7d-47ef-8c0d-f5acf5c34a3d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pydx5p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pyam5p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SELGTHR2" metaid="_30c97ae2-cdd1-4bbb-8055-d3664764f4a4" name="R_SELGTHR2" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_30c97ae2-cdd1-4bbb-8055-d3664764f4a4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dgslnt_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gthrd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gslnt_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALAALAr" metaid="_24c7b076-cdab-4831-b204-b476262b1791" name="D_alanine_D_alanine_ligase__reversible_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011240</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 6.3.2.4</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_24c7b076-cdab-4831-b204-b476262b1791"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.4"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011240"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ala_D_c" stoichiometry="2"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_alaala_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LEUTA" metaid="_05f67c70-fa33-411d-9a41-34703156a6c2" name="leucine_transaminase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_014480</p> <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> <p>EC_NUMBER: 2.6.1.42</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_05f67c70-fa33-411d-9a41-34703156a6c2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.42"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014480"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_4mop_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_leu_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHORD2" metaid="_3ad623d7-86a9-404a-9bd2-2cf74d4619f3" name="dihydoorotic_acid_dehydrogenase__quinone8_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_012210</p> <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> <p>EC_NUMBER: 1.3.5.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3ad623d7-86a9-404a-9bd2-2cf74d4619f3"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.5.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012210"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dhor_S_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_orot_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DALAt2pp" metaid="_1ff9f0b8-ce7a-42a1-90f1-aeae01fbd231" name="D_alanine_transport_in_via_proton_symport__periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1ff9f0b8-ce7a-42a1-90f1-aeae01fbd231"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ala_D_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK120" metaid="_11033452-cc4c-4650-a396-3d597ed06cd1" name="diacylglycerol_kinase__n_C12_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.1.107</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_11033452-cc4c-4650-a396-3d597ed06cd1"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_12dgr120_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pa120_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDCP1Bpp" metaid="_5dbd4070-184a-4621-b940-68cfc8ce8556" name="murein_L_D_carboxypeptidase__murein4p4p___periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> <p>SUBSYSTEM: Murein_Biosynthesis</p> <p>EC_NUMBER: 3.4.17.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5dbd4070-184a-4621-b940-68cfc8ce8556"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_murein4p4p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_murein4p3p_p" stoichiometry="1"/> <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOBDtex" metaid="_9770389f-8fa3-4b15-ba1d-935bf3d71dd5" name="molybdate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9770389f-8fa3-4b15-ba1d-935bf3d71dd5"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_mobd_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_mobd_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_h_e" metaid="_6d564f4a-c974-441f-ae92-d03171c99d4d" name="R_EX_h_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6d564f4a-c974-441f-ae92-d03171c99d4d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA181" metaid="_11a1a22d-37be-440a-a711-ec0fe67162bb" name="Phosphatidylglycerol_synthase__n_C18_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.8.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_11a1a22d-37be-440a-a711-ec0fe67162bb"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cdpdodec11eg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pgp181_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR80x" metaid="_72f99711-8e3b-4cc9-9323-c8aad8721e38" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C8_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 1.3.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_72f99711-8e3b-4cc9-9323-c8aad8721e38"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_toct2eACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ocACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AHC" metaid="_0b7de0b5-f401-4d97-8a9f-8eb9522dddab" name="adenosylhomocysteinase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024950</p> <p>SUBSYSTEM: Cystein_Metabolism</p> <p>EC_NUMBER: 3.3.1.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0b7de0b5-f401-4d97-8a9f-8eb9522dddab"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.3.1.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024950"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ahcys_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_hcys_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_cu2_e" metaid="b7507095-bd33-4161-93c4-eaca0ae599dd" name="R_EX_cu2_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b7507095-bd33-4161-93c4-eaca0ae599dd"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_cu2_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA160abcpp" metaid="_9b0428b8-556c-4454-8bc3-b94c8ff0ea25" name="phosphatidate_transport_via_ABC_system__n_C16_0__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9b0428b8-556c-4454-8bc3-b94c8ff0ea25"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pa160_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pa160_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DTARTD" metaid="_0fb060a3-26e6-4409-8280-0c3cefaeaa6e" name="R_DTARTD" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_016890</p> <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> <p>EC_NUMBER: 4.2.1.81</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0fb060a3-26e6-4409-8280-0c3cefaeaa6e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.81"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016890"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_tartr_D_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK140" metaid="cc7f6070-3430-47ce-93f0-9c6d4b2f457b" name="diacylglycerol_kinase__n_C14_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.1.107</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#cc7f6070-3430-47ce-93f0-9c6d4b2f457b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_12dgr140_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pa140_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GAMptspp" metaid="e0d5d1a3-ddc8-41b4-856f-377ddf310888" name="R_GAMptspp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e0d5d1a3-ddc8-41b4-856f-377ddf310888"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gam_e" stoichiometry="1"/> <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gam6p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_cl_e" metaid="f8f49550-bbf1-40a3-a701-6d7344888a6b" name="R_EX_cl_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f8f49550-bbf1-40a3-a701-6d7344888a6b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_cl_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ICDHyr2" metaid="f8884270-c678-4594-b521-5da61fd3b43f" name="R_ICDHyr2" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_012420 ) OR ( XFCFBP8418_013290 )</p> <p>SUBSYSTEM: Citric_Acid_Cycle</p> <p>EC_NUMBER: 1.1.1.42</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f8884270-c678-4594-b521-5da61fd3b43f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.42"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013290"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012420"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_icit_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_osucc_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ICDHyr1" metaid="_3a6f37a3-e30d-4a3b-8d44-13b859c82de6" name="R_ICDHyr1" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_012420 AND XFCFBP8418_013290</p> <p>SUBSYSTEM: Citric_Acid_Cycle</p> <p>EC_NUMBER: 1.1.1.42</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3a6f37a3-e30d-4a3b-8d44-13b859c82de6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.42"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013290"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012420"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_osucc_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SULRi" metaid="_9f7fedea-e778-446b-bc21-34963625af49" name="sulfite_reductase__NADPH2_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002700 AND XFCFBP8418_002710</p> <p>SUBSYSTEM: Cysteine_Metabolism</p> <p>EC_NUMBER: 1.8.1.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9f7fedea-e778-446b-bc21-34963625af49"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.1.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002710"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002700"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="5"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="3"/> <speciesReference constant="true" species="M_so3_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="3"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="3"/> <speciesReference constant="true" species="M_h2s_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GUAtex" metaid="d24cd184-9dfb-47d8-b10d-348f4fd24257" name="R_GUAtex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d24cd184-9dfb-47d8-b10d-348f4fd24257"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gua_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gua_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AP4AHr" metaid="_8d72706a-895d-42d5-a37e-40cccdc2ab26" name="Ap4A_hydrolase__reversible" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_019500</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.6.1.41</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_8d72706a-895d-42d5-a37e-40cccdc2ab26"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.41"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019500"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ap4a_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_adp_c" stoichiometry="2"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TPI" metaid="_125ccb2b-525a-42f5-81b7-02d29f5fb24f" name="triose_phosphate_isomerase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025760</p> <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> <p>EC_NUMBER: 5.3.1.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_125ccb2b-525a-42f5-81b7-02d29f5fb24f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025760"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_gal_e" metaid="ba58e059-2307-4b18-8399-109a35fb43ae" name="R_EX_gal_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ba58e059-2307-4b18-8399-109a35fb43ae"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_gal_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G1SAT" metaid="_9d7a712e-8036-4241-b97e-2a49121b73fb" name="glutamate_1_semialdehyde_aminotransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_019220</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 5.4.3.8</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9d7a712e-8036-4241-b97e-2a49121b73fb"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.3.8"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019220"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glu1sa_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_5aop_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MALDt2_2pp" metaid="_9d80ccee-607d-48c9-8ca3-0257333fd2c2" name="R_MALDt2_2pp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025480</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9d80ccee-607d-48c9-8ca3-0257333fd2c2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025480"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_mal_D_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_mal_D_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSCVT" metaid="f2421df1-2a4a-40c2-91e7-b4b36d3cdb64" name="R_PSCVT" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021080</p> <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> <p>EC_NUMBER: 2.5.1.19</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f2421df1-2a4a-40c2-91e7-b4b36d3cdb64"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.19"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021080"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_skm5p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_3psme_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK141" metaid="_97f73aaa-f158-4c0e-aec5-f92f1805f78f" name="diacylglycerol_kinase__n_C14_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.1.107</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_97f73aaa-f158-4c0e-aec5-f92f1805f78f"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_12dgr141_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pa141_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_his_L_e" metaid="_85b6e06f-04c1-444b-ad7e-ed6799502f98" name="R_EX_his_L_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_85b6e06f-04c1-444b-ad7e-ed6799502f98"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_his_L_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AIRC3" metaid="ecbfc67d-3b62-4c1b-9c28-271f7d2c6306" name="phosphoribosylaminoimidazole_carboxylase__mutase_rxn_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_013040</p> <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> <p>EC_NUMBER: 5.44.99.18</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ecbfc67d-3b62-4c1b-9c28-271f7d2c6306"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.44.99.18"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013040"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_5aizc_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_5caiz_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA160" metaid="e83a89d6-60a6-4fdf-af63-c21ef4f53c8b" name="Phosphatidylglycerol_synthase__n_C16_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.8.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e83a89d6-60a6-4fdf-af63-c21ef4f53c8b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cdpdhdecg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pgp160_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLtex" metaid="_29c0101f-cf5a-4dbb-bfd3-56c9a20ff991" name="chloride__Cl_1__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_29c0101f-cf5a-4dbb-bfd3-56c9a20ff991"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cl_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cl_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA161" metaid="af2c3417-84b9-4d18-b71e-5b21a9c40fbd" name="Phosphatidylglycerol_synthase__n_C16_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.8.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#af2c3417-84b9-4d18-b71e-5b21a9c40fbd"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cdpdhdec9eg_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pgp161_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADPRDP" metaid="_3dd0ab87-7f08-4cbc-b1eb-776e8b53e3d6" name="ADPribose_diphosphatase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015820</p> <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> <p>EC_NUMBER: 3.6.1.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3dd0ab87-7f08-4cbc-b1eb-776e8b53e3d6"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015820"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adprib_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CITt3pp" metaid="_3b77a00f-04d5-425a-b636-33691ff010bf" name="R_CITt3pp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3b77a00f-04d5-425a-b636-33691ff010bf"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cit_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_cit_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK160" metaid="e579cbe8-097c-441e-a6ee-baef4eade8aa" name="diacylglycerol_kinase__n_C16_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.1.107</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e579cbe8-097c-441e-a6ee-baef4eade8aa"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_12dgr160_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pa160_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGM" metaid="fdb69f82-0373-429f-807b-f88bbdc5decf" name="phosphoglycerate_mutase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_016460 ) OR ( XFCFBP8418_016540 ) OR ( XFCFBP8418_027800 )</p> <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> <p>EC_NUMBER: 5.4.2.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#fdb69f82-0373-429f-807b-f88bbdc5decf"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.2.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016460"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027800"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016540"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_2pg_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_3pg_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK161" metaid="_57b3c827-2fa6-4e81-bdb0-6de5f1ef6e6d" name="diacylglycerol_kinase__n_C16_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 2.7.1.107</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_57b3c827-2fa6-4e81-bdb0-6de5f1ef6e6d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_12dgr161_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pa161_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGL" metaid="_812b8f84-9415-4423-bf06-846d2009b538" name="6_phosphogluconolactonase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024700</p> <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> <p>EC_NUMBER: 3.1.1.31</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_812b8f84-9415-4423-bf06-846d2009b538"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.1.31"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024700"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_6pgl_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_6pgc_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FLDR2" metaid="_2953c195-068f-432b-93b0-4f1799543fe8" name="R_FLDR2" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_016500 AND XFCFBP9418_023100 ) OR ( XFCFBP8418_027840 AND XFCFBP9418_023100 )</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2953c195-068f-432b-93b0-4f1799543fe8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016500"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP9418_023100"/> </fbc:and> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027840"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP9418_023100"/> </fbc:and> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> <speciesReference constant="true" species="M_flxso_c" stoichiometry="2"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_flxr_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGK" metaid="_949a5780-a027-4b9b-b6cc-7989c5178314" name="phosphoglycerate_kinase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_011060</p> <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> <p>EC_NUMBER: 2.7.2.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_949a5780-a027-4b9b-b6cc-7989c5178314"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.2.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011060"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3pg_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_13dpg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLCt2" metaid="_1faff6b2-1f14-4c76-802e-e8c49a977d16" name="R_GLCt2" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_018650</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1faff6b2-1f14-4c76-802e-e8c49a977d16"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018650"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> <speciesReference constant="true" species="M_glc_D_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glc_D_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGI" metaid="_26382bd4-e92e-48aa-9edc-9d7820f1cb06" name="glucose_6_phosphate_isomerase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_026530</p> <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> <p>EC_NUMBER: 5.3.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_26382bd4-e92e-48aa-9edc-9d7820f1cb06"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026530"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_g6p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACALDtex" metaid="d2ea4b50-f902-4a7b-95c2-550da0ba9fa8" name="R_ACALDtex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: Spontaneous</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d2ea4b50-f902-4a7b-95c2-550da0ba9fa8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_acald_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_acald_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FMNAT" metaid="_2bdf44c5-2cb6-4296-9c5d-5dac7b98b1cf" name="FMN_adenylyltransferase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_004690</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.7.7.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2bdf44c5-2cb6-4296-9c5d-5dac7b98b1cf"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004690"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_fmn_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DDPA" metaid="a2fb8836-002f-4c28-8bc6-8cf23e5bdac7" name="3_deoxy_D_arabino_heptulosonate_7_phosphate_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_014390</p> <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> <p>EC_NUMBER: 2.5.1.54</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a2fb8836-002f-4c28-8bc6-8cf23e5bdac7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.54"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014390"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> <speciesReference constant="true" species="M_e4p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_2dda7p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGSL" metaid="_73e88ab8-feb4-43b9-8bbf-485162c2718d" name="argininosuccinate_lyase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025240</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 4.3.2.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_73e88ab8-feb4-43b9-8bbf-485162c2718d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.2.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025240"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_argsuc_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PYRt2rtex" metaid="_068a01f8-c04d-4345-b5f5-d8bf4d8d4c07" name="R_PYRt2rtex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_068a01f8-c04d-4345-b5f5-d8bf4d8d4c07"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_pyr_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_pyr_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_QUINDH" metaid="aa2efde8-2998-4ec0-9559-7a9ca2a9663c" name="Quinate_dehydrogenase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006320</p> <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> <p>EC_NUMBER: 1.1.1.282</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#aa2efde8-2998-4ec0-9559-7a9ca2a9663c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.282"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006320"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_quin_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_3dhq_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HSDy" metaid="db1afa15-7d63-44d6-983a-300bb048428d" name="homoserine_dehydrogenase__NADPH_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020380</p> <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> <p>EC_NUMBER: 1.1.1.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#db1afa15-7d63-44d6-983a-300bb048428d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020380"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hom_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_aspsa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGSSr" metaid="_9a2533a8-f05d-4605-871e-87af7ee80f95" name="argininosuccinate_synthase__reversible" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025280</p> <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> <p>EC_NUMBER: 6.3.4.5</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9a2533a8-f05d-4605-871e-87af7ee80f95"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.5"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025280"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_citr_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_argsuc_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDSR2" metaid="c375b01a-4888-4059-b1a1-e8c71408675b" name="R_TDSR2" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_006350</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c375b01a-4888-4059-b1a1-e8c71408675b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006350"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dsbgox_p" stoichiometry="1"/> <speciesReference constant="true" species="M_dsbdrd_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dsbdox_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dsbgrd_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PTRCtex" metaid="_5db91d6a-04ad-40cb-b1b5-2848ea4e3112" name="putrescine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5db91d6a-04ad-40cb-b1b5-2848ea4e3112"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ptrc_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ptrc_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_glyc_e" metaid="_303676b7-c2e0-4189-9634-db8aa9abc05b" name="R_EX_glyc_e" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Extracellular_exchange</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_303676b7-c2e0-4189-9634-db8aa9abc05b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants/> <listOfProducts> <speciesReference constant="true" species="M_glyc_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUSy" metaid="_946e491d-30ef-4d22-a21c-f94daf2b1f67" name="glutamate_synthase__NADPH_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_013350 AND XFCFBP8418_013360</p> <p>SUBSYSTEM: Glutamate_Metabolism_</p> <p>EC_NUMBER: 1.4.1.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_946e491d-30ef-4d22-a21c-f94daf2b1f67"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.4.1.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013360"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013350"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDSR1" metaid="f7f2d2f9-df08-44da-9732-c9e15a1a2499" name="thiol_disulfide_reductase__DsbC_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_003390 AND XFCFBP8418_006350</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f7f2d2f9-df08-44da-9732-c9e15a1a2499"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006350"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003390"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_dsbcox_p" stoichiometry="1"/> <speciesReference constant="true" species="M_dsbdrd_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dsbcrd_p" stoichiometry="1"/> <speciesReference constant="true" species="M_dsbdox_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYC2Ptex" metaid="_6abfaec7-5d82-4094-807e-05351db886a4" name="sn_Glycerol_2_phosphate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6abfaec7-5d82-4094-807e-05351db886a4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glyc2p_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glyc2p_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METtex" metaid="e0857c6d-dcd9-4cf5-b3eb-c3ee4d21708b" name="L_methionine_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e0857c6d-dcd9-4cf5-b3eb-c3ee4d21708b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_met_L_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_met_L_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LEUTRS" metaid="_01e8e603-05fa-4f85-aace-eada9cdc28e4" name="Leucyl_tRNA_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_019710</p> <p>SUBSYSTEM: tRNA_Charging</p> <p>EC_NUMBER: 6.1.1.4</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_01e8e603-05fa-4f85-aace-eada9cdc28e4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.4"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019710"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_trnaleu_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_leu_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_leutrna_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MEOHtrpp" metaid="_9a3cb379-45c8-4d8e-bd23-8f379fc7ff68" name="Methanol_reversible_transport_via_diffusion__periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9a3cb379-45c8-4d8e-bd23-8f379fc7ff68"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_meoh_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_meoh_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MANtex" metaid="_96653a75-107b-4a14-bcf3-12e782efb8b2" name="R_MANtex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_96653a75-107b-4a14-bcf3-12e782efb8b2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_man_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_man_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOX1abcpp" metaid="b96939fb-79ad-441c-a13b-77a4dea207dd" name="R_METSOX1abcpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b96939fb-79ad-441c-a13b-77a4dea207dd"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_metsox_S_L_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_metsox_S_L_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOX2tex" metaid="_5f779722-a885-4f0e-a40c-1f4eb862d134" name="R_METSOX2tex" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5f779722-a885-4f0e-a40c-1f4eb862d134"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_metsox_R_L_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_metsox_R_L_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PEabcpp" metaid="c63ec343-9b0f-4bd1-acdd-4cf5c0d9da79" name="sn_glycerol_3_phosphoethanolamine_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c63ec343-9b0f-4bd1-acdd-4cf5c0d9da79"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_g3pe_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_g3pe_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR60x" metaid="f98904b1-2fec-4b9d-8d23-1ed5d71a8fff" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C6_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> <p>EC_NUMBER: 1.3.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f98904b1-2fec-4b9d-8d23-1ed5d71a8fff"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_thex2eACP_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hexACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NI2t3tex" metaid="_0fcc3404-73b7-408c-9516-cf5711a5b2d8" name="R_NI2t3tex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_0fcc3404-73b7-408c-9516-cf5711a5b2d8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ni2_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ni2_e" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOPG" metaid="_6c1b1e0c-1214-43dc-ae88-48c6e32c6574" name="R_MOPG" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: Spontaneous</p> <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6c1b1e0c-1214-43dc-ae88-48c6e32c6574"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3c4mop_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_4mop_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACS" metaid="f82a531b-3cfb-4432-a2a9-fc2b1ea7a29b" name="acetyl_CoA_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020630</p> <p>SUBSYSTEM: Pyruvate_Metabolism</p> <p>EC_NUMBER: 6.2.1.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f82a531b-3cfb-4432-a2a9-fc2b1ea7a29b"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020630"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE60" metaid="f3b291e6-d971-4169-8526-c6cc47f9af28" name="R_FACOAE60" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 3.1.2.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#f3b291e6-d971-4169-8526-c6cc47f9af28"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hxcoa_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_hxa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TKT2" metaid="a875eaae-aebe-409c-bfb2-26d163f234fb" name="transketolase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_000640</p> <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> <p>EC_NUMBER: 2.2.1.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a875eaae-aebe-409c-bfb2-26d163f234fb"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.2.1.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000640"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_xu5p_D_c" stoichiometry="1"/> <speciesReference constant="true" species="M_e4p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHDPS" metaid="b5cb189a-d585-442f-bd55-649ff74e2a26" name="dihydrodipicolinate_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_009670</p> <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> <p>EC_NUMBER: 4.3.3.7</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b5cb189a-d585-442f-bd55-649ff74e2a26"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.3.7"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009670"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_aspsa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_23dhdp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TKT1" metaid="e836e051-ab3f-4c80-bc79-1cc08254d046" name="transketolase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_000640</p> <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> <p>EC_NUMBER: 2.2.1.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e836e051-ab3f-4c80-bc79-1cc08254d046"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.2.1.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000640"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_xu5p_D_c" stoichiometry="1"/> <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_s7p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PHETA1" metaid="_87ac1595-703b-4256-851b-cbf43c1556dd" name="phenylalanine_transaminase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_014480</p> <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> <p>EC_NUMBER: 2.6.1.58</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_87ac1595-703b-4256-851b-cbf43c1556dd"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.58"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014480"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_phe_L_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_phpyr_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE100" metaid="_6b0eb87a-7795-4f00-b3ef-190b2a0ad83c" name="R_FACOAE100" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 3.1.2.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_6b0eb87a-7795-4f00-b3ef-190b2a0ad83c"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dcacoa_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dca_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_4PEPTabcpp" metaid="_3d8f4895-48d4-4116-bfd5-088e7038a524" name="tetrapeptide__LalaDgluMdapDala__transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004070 ) OR ( XFCFBP8418_004550 ) OR ( XFCFBP8418_007680 ) OR ( XFCFBP8418_010500 ) OR ( XFCFBP8418_013240 ) OR ( XFCFBP8418_019450 ) OR ( XFCFBP8418_022120 ) OR ( XFCFBP8418_024570 ) OR ( XFCFBP8418_024670 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_3d8f4895-48d4-4116-bfd5-088e7038a524"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010500"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019450"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024570"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013240"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022120"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_LalaDgluMdapDala_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_LalaDgluMdapDala_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HMPK1" metaid="ef3008e2-953d-4543-82a4-ec97725519db" name="hydroxymethylpyrimidine_kinase__ATP_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006340</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 2.7.1.49</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ef3008e2-953d-4543-82a4-ec97725519db"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.49"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006340"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_4ahmmp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_4ampm_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DKMPPD" metaid="ccd90c3a-41ed-419a-a0bb-2b355bea1754" name="R_DKMPPD" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Methionine_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ccd90c3a-41ed-419a-a0bb-2b355bea1754"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dkmpp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> <speciesReference constant="true" species="M_2kmb_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PSabcpp" metaid="e0e6c33a-04e0-41d4-83a0-8545aa8b6f66" name="sn_glycerol_3_phosphoserine_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#e0e6c33a-04e0-41d4-83a0-8545aa8b6f66"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_g3ps_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_g3ps_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HDCAtex" metaid="_5ccf13a2-dbfe-4669-80a1-7789fd33b591" name="Hexadecanoate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5ccf13a2-dbfe-4669-80a1-7789fd33b591"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_hdca_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_hdca_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_VALTA" metaid="ab3fe1bd-a74c-4e17-bb7d-2b5c861e2a13" name="valine_transaminase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_001240</p> <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> <p>EC_NUMBER: 2.6.1.42</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ab3fe1bd-a74c-4e17-bb7d-2b5c861e2a13"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.42"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001240"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_val_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3mob_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPCDC" metaid="ed9df163-5291-41cb-ac95-96c5bba691c7" name="phosphopantothenoylcysteine_decarboxylase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_015430</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 4.1.1.36</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ed9df163-5291-41cb-ac95-96c5bba691c7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.36"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015430"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_4ppcys_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pan4p_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYCLTt4pp" metaid="c88ac52f-c624-4690-8e64-f51c7cf6aabe" name="glycolate_transport_via_sodium_symport__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020610</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c88ac52f-c624-4690-8e64-f51c7cf6aabe"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020610"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glyclt_p" stoichiometry="1"/> <speciesReference constant="true" species="M_na1_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_na1_c" stoichiometry="1"/> <speciesReference constant="true" species="M_glyclt_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NI2t3pp" metaid="_1e4068e5-51d7-4fd8-a4f4-8dd61624331a" name="nickle__Ni_2__transport_out_via_proton_antiport__periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010570</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1e4068e5-51d7-4fd8-a4f4-8dd61624331a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010570"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> <speciesReference constant="true" species="M_ni2_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ni2_p" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2O2tpp" metaid="_00f62093-9dbf-428f-bb5f-36cc0c95c0c9" name="hydrogen_peroxide_transport_via_diffusion__periplasm_to_cytoplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_00f62093-9dbf-428f-bb5f-36cc0c95c0c9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o2_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PDH" metaid="_89f5fa23-9fb3-4857-9262-2dff6e554c93" name="pyruvate_dehydrogenase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005940 AND XFCFBP8418_010550 AND XFCFBP8418_010560</p> <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_89f5fa23-9fb3-4857-9262-2dff6e554c93"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005940"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010550"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010560"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TYRTA" metaid="_1a0f1f58-e6e3-42cf-8c76-5029730e45d4" name="tyrosine_transaminase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_014480 ) OR ( XFCFBP8418_020310 )</p> <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> <p>EC_NUMBER: 2.6.1.57</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_1a0f1f58-e6e3-42cf-8c76-5029730e45d4"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.57"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020310"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014480"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_tyr_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_34hpp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTHP" metaid="ed1c2ad2-b573-4550-aaa1-556818013dc1" name="glutathione_peroxidase__c_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010100</p> <p>SUBSYSTEM: Superoxide_radicals_degradation</p> <p>EC_NUMBER: 1.11.1.9</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ed1c2ad2-b573-4550-aaa1-556818013dc1"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.11.1.9"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010100"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_gthrd_c" stoichiometry="2"/> <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gthox_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTHS" metaid="_2f3ecbc8-470c-4eb7-9768-26bab3a42633" name="glutathione_synthetase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_000840</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 6.3.2.3</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2f3ecbc8-470c-4eb7-9768-26bab3a42633"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.3"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000840"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_glucys_c" stoichiometry="1"/> <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_gthrd_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR180" metaid="_68542414-bf2e-46a6-944f-0ee32746eb97" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C18_0_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.100</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_68542414-bf2e-46a6-944f-0ee32746eb97"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_3ooctdACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3hoctaACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR181" metaid="_5f0f1a76-1f64-4e0f-a45f-242afa43424e" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C18_1_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.100</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5f0f1a76-1f64-4e0f-a45f-242afa43424e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3ocvac11eACP_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_3hcvac11eACP_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_E4PD" metaid="_89a7a200-7abe-4471-bcd7-a5c482b3e7d8" name="Erythrose_4_phosphate_dehydrogenase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_007260</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.2.1.72</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_89a7a200-7abe-4471-bcd7-a5c482b3e7d8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.72"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007260"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_e4p_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> <speciesReference constant="true" species="M_4per_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALKP" metaid="_50f0e00d-d655-43c6-82c6-dcd4a2ea5411" name="R_ALKP" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006010</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 3.1.3.2</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_50f0e00d-d655-43c6-82c6-dcd4a2ea5411"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.2"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006010"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_dha_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UM4PCP" metaid="_82ef8cdc-f8b5-4c23-b88d-60c94ea708d2" name="UDP_N_acetylmuramoyl_L_alanyl_D_gamma_glutamyl_meso_2_6_diaminopimelate_D_alanine_L_D_carboxypeptidase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> <p>SUBSYSTEM: Murein_Biosynthesis</p> <p>EC_NUMBER: 3.4.17.13</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_82ef8cdc-f8b5-4c23-b88d-60c94ea708d2"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_um4p_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ala_D_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ugmd_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AKGDH" metaid="_7c11985a-84f0-4221-bf6f-e2d48fdb05e1" name="2_Oxoglutarate_dehydrogenase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_002140 AND XFCFBP8418_002150 AND XFCFBP8418_010560</p> <p>SUBSYSTEM: Citric_Acid_Cycle</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_7c11985a-84f0-4221-bf6f-e2d48fdb05e1"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:and> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002150"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002140"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010560"/> </fbc:and> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_succoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Htex" metaid="_87f9ed1c-6979-4b1d-b0f5-ba4aa7d809be" name="proton_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_87f9ed1c-6979-4b1d-b0f5-ba4aa7d809be"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE80" metaid="a6fe5fae-c98c-4143-83a3-fa6cc92188e8" name="R_FACOAE80" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 3.1.2.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#a6fe5fae-c98c-4143-83a3-fa6cc92188e8"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_occoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_octa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RIBabcpp" metaid="b282077a-1401-46fa-b1d7-a9dd3b808eaa" name="R_RIBabcpp" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: 3.6.3.17</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#b282077a-1401-46fa-b1d7-a9dd3b808eaa"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.17"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> <speciesReference constant="true" species="M_rib_D_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_rib_D_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HISabcpp" metaid="ba31d6cb-e824-4706-9e51-539ef32f482a" name="L_histidine_transport_via_ABC_system__periplasm_" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: ( XFCFBP8418_004750 ) OR ( XFCFBP8418_022890 )</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: 3.6.3.21</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#ba31d6cb-e824-4706-9e51-539ef32f482a"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.21"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:or> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> </fbc:or> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_his_L_p" stoichiometry="1"/> <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_his_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPt2_2tex" metaid="d7e34678-04d4-4e7a-8de6-cc6b0eb0f51e" name="R_ASPt2_2tex" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Transport__Outer_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#d7e34678-04d4-4e7a-8de6-cc6b0eb0f51e"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_asp_L_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_asp_L_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IZPN" metaid="_5f616904-a689-4932-ac44-22ad74389bd9" name="imidazolonepropionase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Histidine_Metabolism</p> <p>EC_NUMBER: 3.5.2.7</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_5f616904-a689-4932-ac44-22ad74389bd9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.2.7"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_4izp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_forglu_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ENO" metaid="_179a44bc-7464-4c08-a043-29d4c2ba14ef" name="enolase" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_022220</p> <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> <p>EC_NUMBER: 4.2.1.11</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_179a44bc-7464-4c08-a043-29d4c2ba14ef"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.11"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022220"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_2pg_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CO2tex" metaid="_809d6c35-a3db-4775-a2fd-48eafb45eb30" name="CO2_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_809d6c35-a3db-4775-a2fd-48eafb45eb30"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_co2_e" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_co2_p" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PERD" metaid="_76242408-fe56-48c6-ba35-5e36fd9d74d9" name="Erythronate_4_phosphate__4per__dehydrogenase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: No_Assignment</p> <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> <p>EC_NUMBER: 1.1.1.290</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_76242408-fe56-48c6-ba35-5e36fd9d74d9"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.290"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_4per_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_ohpb_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDPXYLS" metaid="_9b1ab803-476c-47f6-b5d0-6bab0d1c3d9d" name="UDP_xylose_synthase" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_020820</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 4.1.1.35</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_9b1ab803-476c-47f6-b5d0-6bab0d1c3d9d"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.35"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020820"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udp4kp_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> <speciesReference constant="true" species="M_udpxyl_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSTGL" metaid="c92731bb-f621-47fa-b53b-f050ea82b7b7" name="R_CYSTGL" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_010590</p> <p>SUBSYSTEM: Cystein_Metabolism</p> <p>EC_NUMBER: 4.4.1.1</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#c92731bb-f621-47fa-b53b-f050ea82b7b7"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/4.4.1.1"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010590"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_cyst_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_2obut_c" stoichiometry="1"/> <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUCtpp" metaid="_34363cfc-fa7f-4df4-a073-49f5befcdf50" name="R_FUCtpp" reversible="true"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_018650</p> <p>SUBSYSTEM: Transport__Inner_Membrane</p> <p>EC_NUMBER: No_Assignment</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_34363cfc-fa7f-4df4-a073-49f5befcdf50"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018650"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> <speciesReference constant="true" species="M_fuc_L_p" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_fuc_L_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> </listOfProducts> </reaction> <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE120" metaid="_2691931b-9cfe-40d9-95d9-13e4ed057413" name="R_FACOAE120" reversible="false"> <notes> <body xmlns="http://www.w3.org/1999/xhtml"> <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> <p>EC_NUMBER: 3.1.2.20</p> </body> </notes> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> <rdf:Description rdf:about="#_2691931b-9cfe-40d9-95d9-13e4ed057413"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <fbc:geneProductAssociation> <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> </fbc:geneProductAssociation> <listOfReactants> <speciesReference constant="true" species="M_ddcacoa_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="M_ddca_c" stoichiometry="1"/> <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> </listOfProducts> </reaction> </listOfReactions> </model> </sbml>