Mercurial > repos > metexplore > met4j
view tools/convert/FbcToNotes/FbcToNotes.xml @ 2:e69a78624877 draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit cb957f5d5540a48293fe8487c0cfad78ab439d7c
author | metexplore |
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date | Tue, 19 Jul 2022 14:20:07 +0000 |
parents | 9b162ee6ff8e |
children | 6bd9aad9626d |
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<?xml version="1.0" encoding="UTF-8"?> <tool id="met4j_FbcToNotes" name="FbcToNotes" version="1.0.1"> <description>Convert FBC package annotations to sbml notes</description> <xrefs> <xref type="bio.tools">met4j</xref> </xrefs> <requirements> <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container> </requirements> <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh convert.FbcToNotes -i "$inputPath" -o "$outputPath" ]]></command> <inputs> <param argument="-i" format="sbml" label="input file" name="inputPath" optional="false" type="data" value=""/> </inputs> <outputs> <data format="sbml" name="outputPath"/> </outputs> <tests> <test> <param name="inputPath" value="ECOL.xml"/> <output ftype="sbml" name="outputPath"> <assert_contents> <is_valid_xml/> <has_line_matching expression=".*GENE_ASSOCIATION: b2312.*" n="1"/> </assert_contents> </output> </test> </tests> <help><![CDATA[Convert FBC package annotations to sbml notes]]></help> <citations/> </tool>