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view tools/networkAnalysis/ChokePoint/test-data/testChoke.tsv @ 8:1274e2a62479 draft default tip
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit e34acf0f51cafcf6ae7c97b4feb3188a39f17c32
author | metexplore |
---|---|
date | Wed, 26 Jul 2023 15:33:45 +0000 |
parents | dcd16521b969 |
children |
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R_TREtex trehalose_transport_via_diffusion__extracellular_to_periplasm_ R_TREtex R_HISDr histidase_r R_HISDr R_TTDCEAtexi R_TTDCEAtexi R_TTDCEAtexi R_ACt2rex R_ACt2rex R_ACt2rex R_GLYtex glycine_transport_via_diffusion__extracellular_to_periplasm_ R_GLYtex R_G3PGtex glycerophoglycerol_transport_via_diffusion__extracellular_to_periplasm_ R_G3PGtex R_X5PL3E R_X5PL3E R_X5PL3E R_ILEtex L_isoleucine_transport_via_diffusion__extracellular_to_periplasm_ R_ILEtex R_PItex phosphate_transport_via_diffusion__extracellular_to_periplasm_ R_PItex R_12DGR141tipp R_12DGR141tipp R_12DGR141tipp R_6PDDGLUCA 6_phospho_5_dehydro_2_deoxy_D_gluconate_aldolase R_6PDDGLUCA R_ADEtex adenine_transport_via_diffusion__extracellular_to_periplasm_ R_ADEtex R_DB4PS 3_4_Dihydroxy_2_butanone_4_phosphate_synthase R_DB4PS R_SPMDtex spermidine_transport_via_diffusion__extracellular_to_periplasm_ R_SPMDtex R_TSULtex thiosulfate_transport_via_diffusion__extracellular_to_periplasm_ R_TSULtex R_FE3tex iron__III__transport_via_diffusion__extracellular_to_periplasm_ R_FE3tex R_TRPS3r R_TRPS3r R_TRPS3r R_GUAtpp R_GUAtpp R_GUAtpp R_PROtex L_proline_transport_via_diffusion__extracellular_to_periplasm_ R_PROtex R_CO2tex CO2_transport_via_diffusion__extracellular_to_periplasm_ R_CO2tex R_COBALT2tex cobalt__Co_2__transport_via_diffusion__extracellular_to_periplasm_ R_COBALT2tex R_HDCEAtexi R_HDCEAtexi R_HDCEAtexi R_MSO3tex methanesulfonate_transport_via_diffusion__extracellular_to_periplasm_ R_MSO3tex R_GLYCLTt4ex R_GLYCLTt4ex R_GLYCLTt4ex R_G3PEtex glycero_3_phosphoethanolamine_transport_via_diffusion__extracellular_to_periplasm_ R_G3PEtex R_MCTP1App murein_crosslinking_transpeptidase_1A__A2pm__D_ala___periplasm_ R_MCTP1App R_OMMBLHX 2_Octaprenyl_3_methyl_6_methoxy_1_4_benzoquinol_hydroxylase R_OMMBLHX R_VALtex L_valine_transport_via_diffusion__extracellular_to_periplasm_ R_VALtex R_OAAtex R_OAAtex R_OAAtex R_GLNtex L_glutamine_transport_via_diffusion__extracellular_to_periplasm_ R_GLNtex R_12DGR180tipp R_12DGR180tipp R_12DGR180tipp R_PMANM phosphomannomutase R_PMANM R_PPM R_PPM R_PPM R_NACtex Nicotinic_acid_transport_via_diffusion__extracellular_to_periplasm_ R_NACtex R_GLYC2Ptex sn_Glycerol_2_phosphate_transport_via_diffusion__extracellular_to_periplasm_ R_GLYC2Ptex R_UREAtpp Urea_transport_via_facilitate_diffusion__periplasm_ R_UREAtpp R_CA2tex R_CA2tex R_CA2tex R_MCTP1Bpp murein_crosslinking_transpeptidase_1B__A2pm__A2pm___periplasm_ R_MCTP1Bpp R_H2Stex Hydrogen_sulfide_transport_via_diffusion__extracellular_to_periplasm_ R_H2Stex R_GLYCt R_GLYCt R_GLYCt R_ZN2tex R_ZN2tex R_ZN2tex R_dextrin_DEC_e_ R_dextrin_DEC_e_ R_dextrin_DEC_e_ R_H2tex R_H2tex R_H2tex R_PYRt2rtex R_PYRt2rtex R_PYRt2rtex R_AIRC3 phosphoribosylaminoimidazole_carboxylase__mutase_rxn_ R_AIRC3 R_TTDCAtex Tetradecanoate_transport_via_diffusion__extracellular_to_periplasm_ R_TTDCAtex R_CLPNS181pp cardiolipin_synthase__periplasmic__n_C18_1_ R_CLPNS181pp R_HYXNtex Hypoxanthine_transport_via_diffusion__extracellular_to_periplasm_ R_HYXNtex R_INSDH 2_keto_myo_inositol_dehydratase R_INSDH R_OTOTt2_2tex R_OTOTt2_2tex R_OTOTt2_2tex R_TDPGDH dTDPglucose_4_6_dehydratase R_TDPGDH R_DHNPTE R_DHNPTE R_DHNPTE R_3HPPtex 3_hydroxypropionate_transport_via_diffusion__extracellular_to_periplasm_ R_3HPPtex R_SULtex R_SULtex R_SULtex R_INSTtex inositol_transport_via_diffusion__extracellular_to_periplasm_ R_INSTtex R_MTRI R_MTRI R_MTRI R_Bztpp R_Bztpp R_Bztpp R_H2tpp R_H2tpp R_H2tpp R_SERtex L_serine_transport_via_diffusion__extracellular_to_periplasm_ R_SERtex R_CD2tex cadmium__Cd_2__transport_via_diffusion__extracellular_to_periplasm_ R_CD2tex R_CHTNtex R_CHTNtex R_CHTNtex R_XYLtex R_XYLtex R_XYLtex R_MPTG murein_polymerizing_transglycosylase R_MPTG R_MECDPS 2_C_methyl_D_erythritol_2_4_cyclodiphosphate_synthase R_MECDPS R_12DGR161tipp R_12DGR161tipp R_12DGR161tipp R_SLNTtex R_SLNTtex R_SLNTtex R_G3PCtex glycero_3_phosphocholine_transport_via_diffusion__extracellular_to_periplasm_ R_G3PCtex R_3HAD60 3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C6_0_ R_3HAD60 R_CLPNS141pp cardiolipin_synthase__periplasmic__n_C14_1_ R_CLPNS141pp R_XYLI1 R_XYLI1 R_XYLI1 R_3HAD120 3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C12_0_ R_3HAD120 R_MEOHtex Methanol_transport_via_diffusion__extracellular_to_periplasm_ R_MEOHtex R_Htex proton_transport_via_diffusion__extracellular_to_periplasm_ R_Htex R_H2O2tex hydrogen_peroxide_transport_via_diffusion__extracellular_to_periplasm_ R_H2O2tex R_Kt2tex R_Kt2tex R_Kt2tex R_3HAD141 3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C14_1_ R_3HAD141 R_PRAMPC phosphoribosyl_AMP_cyclohydrolase R_PRAMPC R_NOtpp NO_transport__diffusion_ R_NOtpp R_12DGR140tipp R_12DGR140tipp R_12DGR140tipp R_QUIN2tex R_QUIN2tex R_QUIN2tex R_SO3tex R_SO3tex R_SO3tex R_G3PItex glycero_3_phospho_1_inositol_transport_via_diffusion__extracellular_to_periplasm_ R_G3PItex R_ABUTtex 4_aminobutyrate_transport_via_diffusion__extracellular_to_periplasm_ R_ABUTtex R_3HAD161 3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C16_1_ R_3HAD161 R_CHTNA2 R_CHTNA2 R_CHTNA2 R_FRUtex D_fructose_transport_via_diffusion__extracellular_to_periplasm_ R_FRUtex R_MCTP2App murein_crosslinking_transpeptidase_1A__A2pm__D_ala___periplasm_ R_MCTP2App R_MOBDtex molybdate_transport_via_diffusion__extracellular_to_periplasm_ R_MOBDtex R_CLPNS180pp cardiolipin_synthase__periplasmic__n_C18_0_ R_CLPNS180pp R_FUMt2_2tex R_FUMt2_2tex R_FUMt2_2tex R_TDPDRE dTDP_4_dehydrorhamnose_3_5_epimerase R_TDPDRE R_UPP3S uroporphyrinogen_III_synthase R_UPP3S R_GLUtex L_glutamate_transport_via_diffusion__extracellular_to_periplasm_ R_GLUtex R_MICITDr 2_methylisocitrate_dehydratase R_MICITDr R_O2tex oxygen_transport_via_diffusion__extracellular_to_periplasm_ R_O2tex R_CYSDtex R_CYSDtex R_CYSDtex R_EPStexXF R_EPStexXF R_EPStexXF R_MEOHtrpp Methanol_reversible_transport_via_diffusion__periplasm_ R_MEOHtrpp R_UDCPPtppi undecaprenyl_phosphate_transport__cytoplasm_to_periplasm_ R_UDCPPtppi R_THYMtex R_THYMtex R_THYMtex R_DAPE diaminopimelate_epimerase R_DAPE R_ORNtex ornithine_transport_via_diffusion__extracellular_to_periplasm_ R_ORNtex R_NH4tex ammonia_transport_via_diffusion__extracellular_to_periplasm_ R_NH4tex R_METSOX2tex R_METSOX2tex R_METSOX2tex R_MDRPDr R_MDRPDr R_MDRPDr R_12DGR181tipp R_12DGR181tipp R_12DGR181tipp R_ADCL R_ADCL R_ADCL R_MANtex R_MANtex R_MANtex R_ASPt2_2tex R_ASPt2_2tex R_ASPt2_2tex R_PRAI phosphoribosylanthranilate_isomerase R_PRAI R_NH3c R_NH3c R_NH3c R_HYXNtpp R_HYXNtpp R_HYXNtpp R_CA2tpp R_CA2tpp R_CA2tpp R_CYStex L_cysteine_transport_via_diffusion__extracellular_to_periplasm_ R_CYStex R_G1SAT glutamate_1_semialdehyde_aminotransferase R_G1SAT R_PTRCtex putrescine_transport_via_diffusion__extracellular_to_periplasm_ R_PTRCtex R_HIStex L_histidine_transport_via_diffusion__extracellular_to_periplasm_ R_HIStex R_CU2tex copper__Cu_2__transport_via_diffusion__extracellular_to_periplasm_ R_CU2tex R_OPMEACPD 3_Oxo_pimeloyl__ACP__methyl_ester_dehydratase R_OPMEACPD R_PPBNGS porphobilinogen_synthase R_PPBNGS R_ARGtex L_arginine_transport_via_diffusion__extracellular_to_periplasm_ R_ARGtex R_PRMICI 1__5_phosphoribosyl__5___5_phosphoribosylamino_methylideneamino_imidazole_4_carboxamide_isomerase R_PRMICI R_THBPTD R_THBPTD R_THBPTD R_ACALDtex R_ACALDtex R_ACALDtex R_G3PStex glycerophosphserine_transport_via_diffusion__extracellular_to_periplasm_ R_G3PStex R_3HAD140 3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C14_0_ R_3HAD140 R_T2DECAI trans_2_decenoyl_ACP_isomerase R_T2DECAI R_METSOX1tex R_METSOX1tex R_METSOX1tex R_CLPNS120pp cardiolipin_synthase__periplasmic__n_C12_0_ R_CLPNS120pp R_DDCAtex Fatty_acid__dodecanoate__transport_via_diffusion__extracellular_to_periplasm_ R_DDCAtex R_FUCtex R_FUCtex R_FUCtex R_LEUtex L_leucine_transport_via_diffusion__extracellular_to_periplasm_ R_LEUtex R_FORtppi formate_transport_via_diffusion__cytoplasm_to_periplasm_ R_FORtppi R_CHORM chorismate_mutase R_CHORM R_3HAD121 3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C12_1_ R_3HAD121 R_GLYALDtex R_GLYALDtex R_GLYALDtex R_RIBtex R_RIBtex R_RIBtex R_OMPHHX 2_octaprenyl_6_methoxyphenol_hydroxylase R_OMPHHX R_URAtex R_URAtex R_URAtex R_CITt3tex R_CITt3tex R_CITt3tex R_3HAD40 3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C4_0_ R_3HAD40 R_NO3tex nitrate_transport_via_diffusion__extracellular_to_periplasm_ R_NO3tex R_MG2tex magnesium__Mg_2__transport_via_diffusion__extracellular_to_periplasm_ R_MG2tex R_NI2t3tex R_NI2t3tex R_NI2t3tex R_GLYALDtpp R_GLYALDtpp R_GLYALDtpp R_GLUR glutamate_racemase R_GLUR R_HCO3tex R_HCO3tex R_HCO3tex R_3HAD180 3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C18_0_ R_3HAD180 R_UDCPDPtppi R_UDCPDPtppi R_UDCPDPtppi R_OGMEACPD 3_Oxo_glutaryl__ACP__methyl_ester_dehydratase R_OGMEACPD R_CLtex chloride__Cl_1__transport_via_diffusion__extracellular_to_periplasm_ R_CLtex R_GLCGSD_c R_GLCGSD_c R_GLCGSD_c R_AKGt2rtex R_AKGt2rtex R_AKGt2rtex R_14GLUCANtex R_14GLUCANtex R_14GLUCANtex R_St R_St R_St R_OPHHX 2_Octaprenylphenol_hydroxylase R_OPHHX R_CU2_bd_CopA Copper_sequestration_by_cop_system R_CU2_bd_CopA R_METDtex R_METDtex R_METDtex R_NOtex nitric_oxide_transport_via_diffusion__extracellular_to_periplasm_ R_NOtex R_OCDCAtexi R_OCDCAtexi R_OCDCAtexi R_DGLUISO 5_deoxy_D_glucuronic_acid_isomerase R_DGLUISO R_CHRPL Chorismate_pyruvate_lyase R_CHRPL R_HDCAtex Hexadecanoate_transport_via_diffusion__extracellular_to_periplasm_ R_HDCAtex R_CU2tpp copper_transport_in_via_permease__no_H__ R_CU2tpp R_ADNtex Adenosine_transport_via_diffusion__extracellular_to_periplasm_ R_ADNtex R_GLYC3Ptex sn_Glycerol_3_phosphate_transport_via_diffusion__extracellular_to_periplasm_ R_GLYC3Ptex R_A5PISO arabinose_5_phosphate_isomerase R_A5PISO R_OCDCEAtexi R_OCDCEAtexi R_OCDCEAtexi R_GUAtex R_GUAtex R_GUAtex R_METtex L_methionine_transport_via_diffusion__extracellular_to_periplasm_ R_METtex R_3HAD80 3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C8_0_ R_3HAD80 R_GMAND GDP_D_mannose_dehydratase R_GMAND R_12DGR120tipp R_12DGR120tipp R_12DGR120tipp R_Mntex R_Mntex R_Mntex R_CLPNS140pp cardiolipin_synthase__periplasmic__n_C14_0_ R_CLPNS140pp R_RBFSb riboflavin_synthase R_RBFSb R_EPStppXF R_EPStppXF R_EPStppXF R_QUIN2tpp R_QUIN2tpp R_QUIN2tpp R_MLDEP1pp murein_L_D_endopeptidase__murein3px3p___periplasm_ R_MLDEP1pp R_MALDt2_2tex R_MALDt2_2tex R_MALDt2_2tex R_CLPNS161pp cardiolipin_synthase__periplasmic__n_C16_1_ R_CLPNS161pp R_Bztex R_Bztex R_Bztex R_NMNtex R_NMNtex R_NMNtex R_FE2tex iron__II__transport_via_diffusion__extracellular_to_periplasm_ R_FE2tex R_3HAD181 3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C18_1_ R_3HAD181 R_DAPtex R_DAPtex R_DAPtex R_GAMtex R_GAMtex R_GAMtex R_PHEMEtiex R_PHEMEtiex R_PHEMEtiex R_UDPGLCUR4EP R_UDPGLCUR4EP R_UDPGLCUR4EP R_FORtex formate_transport_via_diffusion__extracellular_to_periplasm_ R_FORtex R_BTNt2tex R_BTNt2tex R_BTNt2tex R_3HAD160 3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C16_0_ R_3HAD160 R_RBP4E R_RBP4E R_RBP4E R_THRtex L_threonine_transport_via_diffusion__extracellular_to_periplasm_ R_THRtex R_INDOLEtex R_INDOLEtex R_INDOLEtex R_12DGR160tipp R_12DGR160tipp R_12DGR160tipp R_PGAMT phosphoglucosamine_mutase R_PGAMT R_CLPNS160pp cardiolipin_synthase__periplasmic__n_C16_0_ R_CLPNS160pp R_DHNPA2 dihydroneopterin_aldolase R_DHNPA2 R_CLtpp R_CLtpp R_CLtpp R_ALAt2tex R_ALAt2tex R_ALAt2tex R_ETOHtrpp R_ETOHtrpp R_ETOHtrpp