Mercurial > repos > metexplore > met4j_chokepoint

changeset 3:44a268f73da5 draft default tip

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planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170
author metexplore
date Wed, 21 Jan 2026 15:28:25 +0000
parents d8bd2b838d9e
children
files ChokePoint.xml macros.xml
diffstat 2 files changed, 3 insertions(+), 15 deletions(-) [+]
line wrap: on
line diff
--- a/ChokePoint.xml	Tue Oct 28 14:19:41 2025 +0000
+++ b/ChokePoint.xml	Wed Jan 21 15:28:25 2026 +0000
@@ -15,19 +15,7 @@
   <outputs>
     <data format="tsv" name="outputPath"/>
   </outputs>
-  <tests>
-    <test>
-      <param name="inputPath" value="XF_network.sbml"/>
-      <output ftype="tsv" name="outputPath">
-        <assert_contents>
-          <has_n_lines n="695"/>
-          <has_n_columns n="3"/>
-          <has_line_matching expression="R_ADEtex.*adenine_transport_via_diffusion__extracellular_to_periplasm_.*M_ade_e &lt;==&gt; M_ade_p" n="1"/>
-          <has_line_matching expression="R_AGDC_r.*R_AGDC_r.*M_acgam6p_c \+ M_h2o_c --&gt; M_ac_c \+ M_gam6p_c" n="1"/>
-        </assert_contents>
-      </output>
-    </test>
-  </tests>
+  <tests/>
   <help><![CDATA[Compute the Choke points of a metabolic network.
 Choke points are reactions that are required to consume or produce one compound. Targeting of choke point can lead to the accumulation or the loss of some metabolites, thus choke points constitute an indicator of lethality and can help identifying drug target.
 @ATTRIBUTION@]]></help>
--- a/macros.xml	Tue Oct 28 14:19:41 2025 +0000
+++ b/macros.xml	Wed Jan 21 15:28:25 2026 +0000
@@ -3,7 +3,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="2.2.0">met4j</requirement>
+            <requirement type="package" version="2.2.1">met4j</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -12,7 +12,7 @@
             <xref type="bio.tools">met4j</xref>
         </xrefs>
     </xml>
-    <token name="@TOOL_VERSION@">2.2.0</token>
+    <token name="@TOOL_VERSION@">2.2.1</token>
     <token name="@ATTRIBUTION@"><![CDATA[
 **Attribution**