Mercurial > repos > metexplore > met4j_formulamapper

comparison FormulaMapper.xml @ 0:c9f248f68f60 draft

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planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit 538e93b3d7804d3e2d6a8d83aea3853279d37de3-dirty
author metexplore
date Tue, 28 Oct 2025 15:01:20 +0000
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children 927af2eb6534
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-1:000000000000 0:c9f248f68f60
1 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 <tool id="met4j_FormulaMapper" name="FormulaMapper" version="@TOOL_VERSION@">
3 <description>Map a list of formulas against metabolites from a SBML file</description>
4 <macros>
5 <import>macros.xml</import>
6 </macros>
7 <expand macro="bio_tools"/>
8 <expand macro="requirements"/>
9 <command detect_errors="exit_code"><![CDATA[met4j mapping.FormulaMapper -i "$sbmlPath"
10 -f "$inputPath"
11 $na
12 -o "$outputPath"
13 ]]></command>
14 <inputs>
15 <param argument="-i" format="sbml" label="input SBML file" name="sbmlPath" optional="false" type="data" value=""/>
16 <param argument="-f" format="tsv" label="input formula file (one per line)" name="inputPath" optional="false" type="data" value=""/>
17 <param argument="-na" checked="false" falsevalue="" label="Output formulas without match in model, with NA value" name="na" truevalue="-na" type="boolean" value="false"/>
18 </inputs>
19 <outputs>
20 <data format="tsv" name="outputPath"/>
21 </outputs>
22 <tests/>
23 <help><![CDATA[
24 @ATTRIBUTION@]]></help>
25 <citations/>
26 </tool>