# HG changeset patch
# User metexplore
# Date 1769009387 0
# Node ID 195e17a50532a082ddd3b4244a16d258ecaf5379
# Parent  eea1309294a0933493299b90c7e5ec83d8340717
planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170

diff -r eea1309294a0 -r 195e17a50532 GetEntities.xml
--- a/GetEntities.xml	Fri Nov 21 10:20:22 2025 +0000
+++ b/GetEntities.xml	Wed Jan 21 15:29:47 2026 +0000
@@ -27,33 +27,7 @@
   <outputs>
     <data format="tsv" name="outputFile"/>
   </outputs>
-  <tests>
-    <test>
-      <param name="sbml" value="Human-GEM_pathways.xml"/>
-      <output ftype="tsv" name="outputFile">
-        <assert_contents>
-          <has_text_matching expression="GENE" n="86"/>
-          <has_text_matching expression="METABOLITE" n="111"/>
-          <has_text_matching expression="REACTION" n="75"/>
-          <has_text_matching expression="PATHWAY" n="3"/>
-          <has_text_matching expression="COMPARTMENT" n="5"/>
-        </assert_contents>
-      </output>
-    </test>
-    <test>
-      <param name="sbml" value="Human-GEM_pathways.xml"/>
-      <param name="printReactions" value="true"/>
-      <param name="printMetabolites" value="true"/>
-      <param name="printGenes" value="true"/>
-      <param name="printCompartments" value="true"/>
-      <param name="noTypeCol" value="true"/>
-      <output ftype="tsv" name="outputFile">
-        <assert_contents>
-          <has_n_lines n="277"/>
-        </assert_contents>
-      </output>
-    </test>
-  </tests>
+  <tests/>
   <help><![CDATA[Parse a SBML file to return a list of entities composing the network: metabolites, reactions, genes and others.The output file is a tabulated file with two columns, one with entity identifiers, and one with the entity type. If no entity type is selected, all of them are returned by default. Only identifiers are written, attributes can be extracted from dedicated apps or from the Sbml2Tab app.
 @ATTRIBUTION@]]></help>
   <citations/>
diff -r eea1309294a0 -r 195e17a50532 macros.xml
--- a/macros.xml	Fri Nov 21 10:20:22 2025 +0000
+++ b/macros.xml	Wed Jan 21 15:29:47 2026 +0000
@@ -3,7 +3,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="2.2.0">met4j</requirement>
+            <requirement type="package" version="2.2.1">met4j</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -12,7 +12,7 @@
             <xref type="bio.tools">met4j</xref>
         </xrefs>
     </xml>
-    <token name="@TOOL_VERSION@">2.2.0</token>
+    <token name="@TOOL_VERSION@">2.2.1</token>
     <token name="@ATTRIBUTION@"><![CDATA[
 **Attribution**