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comparison LoadPoint.xml @ 3:48d5953d2ba8 draft default tip

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planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170
author metexplore
date Wed, 21 Jan 2026 15:30:34 +0000
parents 777f1493e471
children
comparison
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2:de4c12e9b3a1 3:48d5953d2ba8
25 </param> 25 </param>
26 </inputs> 26 </inputs>
27 <outputs> 27 <outputs>
28 <data format="tsv" name="outputPath"/> 28 <data format="tsv" name="outputPath"/>
29 </outputs> 29 </outputs>
30 <tests> 30 <tests/>
31 <test>
32 <param name="inputPath" value="toy_model.xml"/>
33 <output ftype="tsv" name="outputPath">
34 <assert_contents>
35 <has_n_columns n="3"/>
36 <has_n_lines n="8"/>
37 </assert_contents>
38 </output>
39 </test>
40 </tests>
41 <help><![CDATA[Compute the Load points of a metabolic network. Load points constitute an indicator of lethality and can help identifying drug targets. 31 <help><![CDATA[Compute the Load points of a metabolic network. Load points constitute an indicator of lethality and can help identifying drug targets.
42 From Rahman et al. Observing local and global properties of metabolic pathways: ‘load points’ and ‘choke points’ in the metabolic networks. Bioinf. (2006): 32 From Rahman et al. Observing local and global properties of metabolic pathways: ‘load points’ and ‘choke points’ in the metabolic networks. Bioinf. (2006):
43 For a given metabolic network, the load L on metabolite m can be defined as : 33 For a given metabolic network, the load L on metabolite m can be defined as :
44 ln [(pm/km)/(∑Mi=1Pi)/(∑Mi=1Ki)] 34 ln [(pm/km)/(∑Mi=1Pi)/(∑Mi=1Ki)]
45 p is the number of shortest paths passing through a metabolite m; 35 p is the number of shortest paths passing through a metabolite m;