Mercurial > repos > metexplore > met4j_namematcher

comparison NameMatcher.xml @ 3:2aa74b67755f draft default tip

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planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170
author metexplore
date Wed, 21 Jan 2026 15:30:51 +0000
parents 54a9e177e17c
children
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2:eecf4a934d32 3:2aa74b67755f
1 <?xml version="1.0" encoding="UTF-8" standalone="no"?> 1 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 <tool id="met4j_NameMatcher" name="NameMatcher" version="@TOOL_VERSION@"> 2 <tool id="met4j_NameMatcher" name="NameMatcher" version="@TOOL_VERSION@">
3 <description>This tool runs edit-distance based fuzzy matching to perform near-similar name matching between a metabolic model and a list of chemical names in a dataset. A harmonization processing is performed on chemical names with substitutions of common patterns among synonyms, in order to create aliases on which classical fuzzy matching can be run efficiently.</description> 3 <description>From a list of compound names, find the best matching metabolites in a SBML model using fuzzy name matching on harmonized aliases.</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="bio_tools"/> 7 <expand macro="bio_tools"/>
8 <expand macro="requirements"/> 8 <expand macro="requirements"/>