Mercurial > repos > metexplore > met4j_sbml2tab
view Sbml2Tab.xml @ 3:afc9b623aa3e draft default tip
planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170
| author | metexplore |
|---|---|
| date | Wed, 21 Jan 2026 15:31:53 +0000 |
| parents | be58dd7c74ee |
| children |
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<?xml version="1.0" encoding="UTF-8" standalone="no"?> <tool id="met4j_Sbml2Tab" name="Sbml2Tab" version="@TOOL_VERSION@"> <description>Create a tabulated file listing reaction attributes from a SBML file</description> <macros> <import>macros.xml</import> </macros> <expand macro="bio_tools"/> <expand macro="requirements"/> <command detect_errors="exit_code"><![CDATA[met4j convert.Sbml2Tab#if str($i): -irr "$i" #end if #if str($r): -rev "$r" #end if -i "$in" -o "$out" ]]></command> <inputs> <param argument="-irr" label="[-->] String for irreversible reaction" name="i" optional="true" type="text" value="-->"> <sanitizer invalid_char="_"> <valid initial="string.printable"/> </sanitizer> </param> <param argument="-rev" label="[<==>] String for reversible reaction" name="r" optional="true" type="text" value="<==>"> <sanitizer invalid_char="_"> <valid initial="string.printable"/> </sanitizer> </param> <param argument="-i" format="sbml" label="Sbml file" name="in" optional="false" type="data" value=""/> </inputs> <outputs> <data format="tsv" name="out"/> </outputs> <tests/> <help><![CDATA[Create a tabulated file listing reaction attributes from a SBML file @ATTRIBUTION@]]></help> <citations/> </tool>
