view Sbml2Tab.xml @ 3:afc9b623aa3e draft default tip

planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170
author metexplore
date Wed, 21 Jan 2026 15:31:53 +0000
parents be58dd7c74ee
children
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<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<tool id="met4j_Sbml2Tab" name="Sbml2Tab" version="@TOOL_VERSION@">
  <description>Create a tabulated file listing reaction attributes from a SBML file</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="bio_tools"/>
  <expand macro="requirements"/>
  <command detect_errors="exit_code"><![CDATA[met4j convert.Sbml2Tab#if str($i):
 -irr "$i"
#end if
#if str($r):
 -rev "$r"
#end if
 -i "$in"
 -o "$out"
]]></command>
  <inputs>
    <param argument="-irr" label="[--&gt;] String for irreversible reaction" name="i" optional="true" type="text" value="--&gt;">
      <sanitizer invalid_char="_">
        <valid initial="string.printable"/>
      </sanitizer>
    </param>
    <param argument="-rev" label="[&lt;==&gt;] String for reversible reaction" name="r" optional="true" type="text" value="&lt;==&gt;">
      <sanitizer invalid_char="_">
        <valid initial="string.printable"/>
      </sanitizer>
    </param>
    <param argument="-i" format="sbml" label="Sbml file" name="in" optional="false" type="data" value=""/>
  </inputs>
  <outputs>
    <data format="tsv" name="out"/>
  </outputs>
  <tests/>
  <help><![CDATA[Create a tabulated file listing reaction attributes from a SBML file
@ATTRIBUTION@]]></help>
  <citations/>
</tool>