Mercurial > repos > metexplore > met4j_setchemicalformulas
changeset 3:b9d95baab679 draft default tip
planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170
| author | metexplore |
|---|---|
| date | Wed, 21 Jan 2026 15:32:35 +0000 |
| parents | c1a0a6d9766a |
| children | |
| files | SetChemicalFormulas.xml macros.xml |
| diffstat | 2 files changed, 3 insertions(+), 19 deletions(-) [+] |
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--- a/SetChemicalFormulas.xml Fri Nov 21 10:23:19 2025 +0000 +++ b/SetChemicalFormulas.xml Wed Jan 21 15:32:35 2026 +0000 @@ -47,23 +47,7 @@ <outputs> <data format="sbml" name="out"/> </outputs> - <tests> - <test> - <param name="sbml" value="toy_model.xml"/> - <param name="tab" value="formula.tsv"/> - <output ftype="sbml" name="out"> - <assert_contents> - <is_valid_xml/> - <has_line_matching expression=".*CH6O6.*" n="2"/> - <has_line_matching expression=".*CH12O4.*" n="2"/> - </assert_contents> - </output> - </test> - <test expect_failure="true"> - <param name="sbml" value="toy_model.xml"/> - <param name="tab" value="formulaBad.tsv"/> - </test> - </tests> + <tests/> <help><![CDATA[Set Formula to network metabolites from a tabulated file containing the metabolite ids and the formulas The ids must correspond between the tabulated file and the SBML file. If prefix or suffix is different in the SBML file, use the -p or the -s options.
--- a/macros.xml Fri Nov 21 10:23:19 2025 +0000 +++ b/macros.xml Wed Jan 21 15:32:35 2026 +0000 @@ -3,7 +3,7 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="2.2.0">met4j</requirement> + <requirement type="package" version="2.2.1">met4j</requirement> <yield/> </requirements> </xml> @@ -12,7 +12,7 @@ <xref type="bio.tools">met4j</xref> </xrefs> </xml> - <token name="@TOOL_VERSION@">2.2.0</token> + <token name="@TOOL_VERSION@">2.2.1</token> <token name="@ATTRIBUTION@"><![CDATA[ **Attribution**