Mercurial > repos > metexplore > met4j_setecnumbers

comparison SetEcNumbers.xml @ 3:a0ba54d595f0 draft default tip

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planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170
author metexplore
date Wed, 21 Jan 2026 15:32:41 +0000
parents 8300b31b0e2b
children
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2:6730f794d451 3:a0ba54d595f0
43 </param> 43 </param>
44 </inputs> 44 </inputs>
45 <outputs> 45 <outputs>
46 <data format="sbml" name="out"/> 46 <data format="sbml" name="out"/>
47 </outputs> 47 </outputs>
48 <tests> 48 <tests/>
49 <test>
50 <param name="sbml" value="toy_model.xml"/>
51 <param name="tab" value="ec.tsv"/>
52 <output ftype="sbml" name="out">
53 <assert_contents>
54 <is_valid_xml/>
55 <has_line_matching expression=".*1.1.1.1.*" n="2"/>
56 <has_line_matching expression=".*1.2.3.4.*" n="2"/>
57 </assert_contents>
58 </output>
59 </test>
60 <test expect_failure="true">
61 <param name="sbml" value="toy_model.xml"/>
62 <param name="tab" value="ecBad.tsv"/>
63 </test>
64 </tests>
65 <help><![CDATA[Set EC numbers to reactions in a SBML file from a tabulated file containing the reaction ids and the EC numbers 49 <help><![CDATA[Set EC numbers to reactions in a SBML file from a tabulated file containing the reaction ids and the EC numbers
66 The ids must correspond between the tabulated file and the SBML file. 50 The ids must correspond between the tabulated file and the SBML file.
67 If prefix R_ is present in the ids in the SBML file and not in the tabulated file, use the -p option. 51 If prefix R_ is present in the ids in the SBML file and not in the tabulated file, use the -p option.
68 The EC will be written in the SBML file in two locations: 52 The EC will be written in the SBML file in two locations:
69 - in the reaction HTML notes (e.g. EC_NUMBER: 2.4.2.14) 53 - in the reaction HTML notes (e.g. EC_NUMBER: 2.4.2.14)