Mercurial > repos > metexplore > met4j_setgprs
diff SetGprs.xml @ 3:d8b1f69da790 draft default tip
planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170
| author | metexplore |
|---|---|
| date | Wed, 21 Jan 2026 15:32:48 +0000 |
| parents | 67e93e5f08ee |
| children |
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--- a/SetGprs.xml Fri Nov 21 10:23:31 2025 +0000 +++ b/SetGprs.xml Wed Jan 21 15:32:48 2026 +0000 @@ -45,26 +45,7 @@ <outputs> <data format="sbml" name="out"/> </outputs> - <tests> - <test> - <param name="sbml" value="toy_model.xml"/> - <param name="tab" value="gpr.tsv"/> - <output ftype="sbml" name="out"> - <assert_contents> - <is_valid_xml/> - <has_line_matching expression=".*fbc:id=.G1.*" n="1"/> - <has_line_matching expression=".*fbc:id=.G2.*" n="1"/> - <has_line_matching expression=".*fbc:id=.G3.*" n="1"/> - <has_line_matching expression=".*fbc:id=.G4.*" n="1"/> - <has_line_matching expression=".*fbc:geneProductRef fbc:geneProduct=.G1.*" n="1"/> - <has_line_matching expression=".*fbc:geneProductRef fbc:geneProduct=.G2.*" n="1"/> - <has_line_matching expression=".*fbc:geneProductRef fbc:geneProduct=.G3.*" n="1"/> - <has_line_matching expression=".*fbc:geneProductRef fbc:geneProduct=.G4.*" n="1"/> - <has_line_matching expression=".*fbc:and.*" n="2"/> - </assert_contents> - </output> - </test> - </tests> + <tests/> <help><![CDATA[Create a new SBML file from an original sbml file and a tabulated file containing reaction ids and Gene association written in a cobra way The ids must correspond between the tabulated file and the SBML file. If prefix R_ is present in the ids in the SBML file and not in the tabulated file, use the -p option. @@ -74,7 +55,7 @@ - as fbc gene product association (see FBC package specifications: https://doi.org/10.1515/jib-2017-0082) @ATTRIBUTION@]]></help> <citations> + <citation type="doi">10.1515/jib-2017-0082</citation> <citation type="doi">10.1038/nprot.2011.308</citation> - <citation type="doi">10.1515/jib-2017-0082</citation> </citations> </tool>