# HG changeset patch
# User mgarnier
# Date 1629380379 0
# Node ID ae68b2a86229b4dd435cab9d8ab2679075950774
# Parent  ef012cfc41e8f11a8ee8b73888636e95721e42ce
Uploaded

diff -r ef012cfc41e8 -r ae68b2a86229 pangenomeCogAnalysis.xml
--- a/pangenomeCogAnalysis.xml	Thu Aug 19 13:39:24 2021 +0000
+++ b/pangenomeCogAnalysis.xml	Thu Aug 19 13:39:39 2021 +0000
@@ -16,7 +16,7 @@
             #set $named_input_files = $named_input_files + ',' + $_input_file
         #end for
 
-	perl ${__tool_directory__}/pangenomeCogAnalysis_V1.pl $input $input2 $input_files $named_input_files $gff_files $output $output2 $output3 $output4
+	perl ${__tool_directory__}/pangenomeCogAnalysis_V1.pl $input $input2 $input_files $named_input_files $gff_files $output $output2 $output3 $output4 $output8 $output9
 
 	]]></command>
 
@@ -45,6 +45,8 @@
 	<collection name="output7" type="list" label="Strain specific genes coordinates">
                 <discover_datasets pattern="__name_and_ext__" directory="StrainSpecific" />
         </collection>
+	<data format="txt" name="output8" label="Odds ratio for core/accessory/unique"/>
+	<data format="txt" name="output9" label="Odds ratio comparison between groups"/>	
 </outputs>
 
 </tool>