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comparison test-data/fsd_output2.tab @ 17:2e517a54eedc draft

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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
author mheinzl
date Tue, 02 Apr 2019 05:10:09 -0400
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children c825a29a7d9f
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16:6bd9ef49d013 17:2e517a54eedc
1 Values from family size distribution with all datasets
2
3 Family size fsd_data1.tab fsd_data2.tab fsd_data3.tab
4 FS=1 63 63 63
5 FS=2 5 5 5
6 FS=3 8 8 8
7 FS=4 9 9 9
8 FS=5 3 3 3
9 FS=6 5 5 5
10 FS=7 3 3 3
11 FS=8 3 3 3
12 FS=9 2 2 2
13 FS=10 3 3 3
14 FS=11 1 1 1
15 FS=12 3 3 3
16 FS=13 3 3 3
17 FS=14 0 0 0
18 FS=15 0 0 0
19 FS=16 0 0 0
20 FS=17 0 0 0
21 FS=18 0 0 0
22 FS=19 0 0 0
23 FS=20 0 0 0
24 FS>20 1 1 1
25 sum 112 112 112
26 Dataset: fsd_data1.tab
27 max. family size: 21
28 absolute frequency: 1
29 relative frequency: 0.009
30
31 singletons: family size > 20:
32 nr. of tags rel. freq of tags rel.freq of PE reads nr. of tags rel. freq of tags nr. of PE reads rel. freq of PE reads total nr. of tags total nr. of PE reads
33 fsd_data1.tab 63 0.562 0.167 1 0.009 21 0.056 112 378
34
35 The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS)
36 Whereas the total frequencies were calculated from the whole dataset (=including the DCS).
37
38 FS >= 1 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads:
39 unique: total unique total:
40 SSCS ab 47 123 0.431 0.339 0.420 0.325
41 SSCS ba 59 222 0.488 0.481 0.476 0.468
42 DCS (total) 3 (6) 18 (33) 0.028 0.027 (0.054) 0.050 0.048 (0.087)
43 total nr. of tags 109 363 109 112 363 378
44
45 FS >= 3 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads:
46 unique: total unique total:
47 SSCS ab 14 87 0.341 0.259 0.313 0.224
48 SSCS ba 26 187 0.491 0.481 0.495 0.482
49 DCS (total) 1 (2) 4 (14) 0.024 0.024 (0.048) 0.014 0.014 (0.049)
50 total nr. of tags 41 278 41 42 278 288
51
52 Values from family size distribution
53 duplex ab ba sum
54 FS=1 2 30 31 63
55 FS=2 0 3 2 5
56 FS=3 0 3 5 8
57 FS=4 2 3 4 9
58 FS=5 0 2 1 3
59 FS=6 0 1 4 5
60 FS=7 0 1 2 3
61 FS=8 0 1 2 3
62 FS=9 0 0 2 2
63 FS=10 1 1 1 3
64 FS=11 0 0 1 1
65 FS=12 0 1 2 3
66 FS=13 1 1 1 3
67 FS=14 0 0 0 0
68 FS=15 0 0 0 0
69 FS=16 0 0 0 0
70 FS=17 0 0 0 0
71 FS=18 0 0 0 0
72 FS=19 0 0 0 0
73 FS=20 0 0 0 0
74 FS>20 0 0 1 1
75
76 Dataset: fsd_data2.tab
77 max. family size: 21
78 absolute frequency: 1
79 relative frequency: 0.009
80
81 singletons: family size > 20:
82 nr. of tags rel. freq of tags rel.freq of PE reads nr. of tags rel. freq of tags nr. of PE reads rel. freq of PE reads total nr. of tags total nr. of PE reads
83 fsd_data2.tab 63 0.562 0.167 1 0.009 21 0.056 112 378
84
85 The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS)
86 Whereas the total frequencies were calculated from the whole dataset (=including the DCS).
87
88 FS >= 1 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads:
89 unique: total unique total:
90 SSCS ab 47 123 0.431 0.339 0.420 0.325
91 SSCS ba 59 222 0.488 0.481 0.476 0.468
92 DCS (total) 3 (6) 18 (33) 0.028 0.027 (0.054) 0.050 0.048 (0.087)
93 total nr. of tags 109 363 109 112 363 378
94
95 FS >= 3 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads:
96 unique: total unique total:
97 SSCS ab 14 87 0.341 0.259 0.313 0.224
98 SSCS ba 26 187 0.491 0.481 0.495 0.482
99 DCS (total) 1 (2) 4 (14) 0.024 0.024 (0.048) 0.014 0.014 (0.049)
100 total nr. of tags 41 278 41 42 278 288
101
102 Values from family size distribution
103 duplex ab ba sum
104 FS=1 2 30 31 63
105 FS=2 0 3 2 5
106 FS=3 0 3 5 8
107 FS=4 2 3 4 9
108 FS=5 0 2 1 3
109 FS=6 0 1 4 5
110 FS=7 0 1 2 3
111 FS=8 0 1 2 3
112 FS=9 0 0 2 2
113 FS=10 1 1 1 3
114 FS=11 0 0 1 1
115 FS=12 0 1 2 3
116 FS=13 1 1 1 3
117 FS=14 0 0 0 0
118 FS=15 0 0 0 0
119 FS=16 0 0 0 0
120 FS=17 0 0 0 0
121 FS=18 0 0 0 0
122 FS=19 0 0 0 0
123 FS=20 0 0 0 0
124 FS>20 0 0 1 1
125
126 Dataset: fsd_data3.tab
127 max. family size: 21
128 absolute frequency: 1
129 relative frequency: 0.009
130
131 singletons: family size > 20:
132 nr. of tags rel. freq of tags rel.freq of PE reads nr. of tags rel. freq of tags nr. of PE reads rel. freq of PE reads total nr. of tags total nr. of PE reads
133 fsd_data3.tab 63 0.562 0.167 1 0.009 21 0.056 112 378
134
135 The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS)
136 Whereas the total frequencies were calculated from the whole dataset (=including the DCS).
137
138 FS >= 1 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads:
139 unique: total unique total:
140 SSCS ab 47 123 0.431 0.339 0.420 0.325
141 SSCS ba 59 222 0.488 0.481 0.476 0.468
142 DCS (total) 3 (6) 18 (33) 0.028 0.027 (0.054) 0.050 0.048 (0.087)
143 total nr. of tags 109 363 109 112 363 378
144
145 FS >= 3 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads:
146 unique: total unique total:
147 SSCS ab 14 87 0.341 0.259 0.313 0.224
148 SSCS ba 26 187 0.491 0.481 0.495 0.482
149 DCS (total) 1 (2) 4 (14) 0.024 0.024 (0.048) 0.014 0.014 (0.049)
150 total nr. of tags 41 278 41 42 278 288
151
152 Values from family size distribution
153 duplex ab ba sum
154 FS=1 2 30 31 63
155 FS=2 0 3 2 5
156 FS=3 0 3 5 8
157 FS=4 2 3 4 9
158 FS=5 0 2 1 3
159 FS=6 0 1 4 5
160 FS=7 0 1 2 3
161 FS=8 0 1 2 3
162 FS=9 0 0 2 2
163 FS=10 1 1 1 3
164 FS=11 0 0 1 1
165 FS=12 0 1 2 3
166 FS=13 1 1 1 3
167 FS=14 0 0 0 0
168 FS=15 0 0 0 0
169 FS=16 0 0 0 0
170 FS=17 0 0 0 0
171 FS=18 0 0 0 0
172 FS=19 0 0 0 0
173 FS=20 0 0 0 0
174 FS>20 0 0 1 1