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comparison fsd.py @ 7:43b16247c35a draft

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planemo upload for repository https://github.com/monikaheinzl/galaxyProject/tree/master/tools/fsd commit 0641c8994fa786f303f6546d88ce24f15504d9b0
author mheinzl
date Wed, 09 May 2018 09:24:18 -0400
parents c4b8222dce29
children f7136e93604b
comparison
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6:c4b8222dce29 7:43b16247c35a
84 84
85 with open(title_file, "w") as output_file, PdfPages(title_file2) as pdf: 85 with open(title_file, "w") as output_file, PdfPages(title_file2) as pdf:
86 fig = plt.figure() 86 fig = plt.figure()
87 plt.subplots_adjust(bottom=0.25) 87 plt.subplots_adjust(bottom=0.25)
88 if firstFile != str(None): 88 if firstFile != str(None):
89 print(firstFile)
90
89 file1 = readFileReferenceFree(firstFile) 91 file1 = readFileReferenceFree(firstFile)
90 integers = numpy.array(file1[:, 0]).astype(int) ## keep original family sizes 92 integers = numpy.array(file1[:, 0]).astype(int) ## keep original family sizes
91 93
92 # for plot: replace all big family sizes by 22 94 # for plot: replace all big family sizes by 22
93 data1 = numpy.array(file1[:, 0]).astype(int) 95 data1 = numpy.array(file1[:, 0]).astype(int)