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comparison fsd.py @ 11:b615c7e51f40 draft

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planemo upload for repository https://github.com/monikaheinzl/galaxyProject/tree/master/tools/fsd commit 29bc65d5627553741c83ce1f298223e2b266f7c8
author mheinzl
date Tue, 15 May 2018 14:22:43 -0400
parents f7136e93604b
children 9033fd840986
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10:f7136e93604b 11:b615c7e51f40
40 parser.add_argument('--inputFile4',default=None, 40 parser.add_argument('--inputFile4',default=None,
41 help='Tabular File with three columns: ab or ba, tag and family size.') 41 help='Tabular File with three columns: ab or ba, tag and family size.')
42 parser.add_argument('--inputName4') 42 parser.add_argument('--inputName4')
43 parser.add_argument('--sep', default=",", 43 parser.add_argument('--sep', default=",",
44 help='Separator in the csv file.') 44 help='Separator in the csv file.')
45 parser.add_argument('--output_pdf', default="data.pdf",type=str,
46 help='Name of the pdf file.')
45 parser.add_argument('--output_csv', default="data.csv",type=str, 47 parser.add_argument('--output_csv', default="data.csv",type=str,
46 help='Name of the pdf and csv file.') 48 help='Name of the csv file.')
47 parser.add_argument('--output_pdf', default="data.pdf",type=str, 49
48 help='Name of the pdf and csv file.')
49 return parser 50 return parser
50 51
51 def compare_read_families(argv): 52 def compare_read_families(argv):
52 parser = make_argparser() 53 parser = make_argparser()
53 args=parser.parse_args(argv[1:]) 54 args=parser.parse_args(argv[1:])