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comparison fsd.py @ 19:b7bccbbee4a7 draft

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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
author mheinzl
date Wed, 08 May 2019 07:08:41 -0400
parents c825a29a7d9f
children 64f0362c974e
comparison
equal deleted inserted replaced
18:c825a29a7d9f 19:b7bccbbee4a7
339 new_unique.append(t) 339 new_unique.append(t)
340 else: 340 else:
341 c_idx = numpy.where(t == unique)[0] 341 c_idx = numpy.where(t == unique)[0]
342 new_c.append(c[c_idx]) 342 new_c.append(c[c_idx])
343 new_unique.append(unique[c_idx]) 343 new_unique.append(unique[c_idx])
344 print(new_unique)
345 print(new_c)
344 y = numpy.array(new_unique) * numpy.array(new_c) 346 y = numpy.array(new_unique) * numpy.array(new_c)
345 if len([list_to_plot_original > 20]) > 0: 347 if len([list_to_plot_original > 20]) > 0:
346 y[len(y) - 1] = sum(list_to_plot_original[i][list_to_plot_original[i] > 20]) 348 y[len(y) - 1] = sum(list_to_plot_original[i][list_to_plot_original[i] > 20])
347 reads.append(y) 349 reads.append(y)
348 reads_rel.append(list(numpy.float_(y)) / sum(y)) 350 reads_rel.append(list(numpy.float_(y)) / sum(y))