Mercurial > repos > mheinzl > fsd
diff fsd.py @ 5:69f47e0b804e draft
planemo upload for repository https://github.com/monikaheinzl/galaxyProject/tree/master/tools/fsd commit 9829d657c07703b117bed2f259ddba432b244312
| author | mheinzl |
|---|---|
| date | Wed, 09 May 2018 09:13:46 -0400 |
| parents | 648d5df50ca8 |
| children | c4b8222dce29 |
line wrap: on
line diff
--- a/fsd.py Wed May 09 09:09:26 2018 -0400 +++ b/fsd.py Wed May 09 09:13:46 2018 -0400 @@ -29,8 +29,8 @@ def make_argparser(): parser = argparse.ArgumentParser(description='Family Size Distribution of duplex sequencing data') - parser.add_argument('inputFile', - help='Tabular File with three columns: ab or ba, tag and family size.') + # parser.add_argument('inputFile', + # help='Tabular File with three columns: ab or ba, tag and family size.') parser.add_argument('--inputName1') parser.add_argument('--inputFile2',default=None, help='Tabular File with three columns: ab or ba, tag and family size.') @@ -53,8 +53,10 @@ parser = make_argparser() args=parser.parse_args(argv[1:]) - firstFile = args.inputFile + #firstFile = args.inputFile name1 = args.inputName1 + firstFile = args.inputName1 + secondFile = args.inputFile2 name2 = args.inputName2 thirdFile = args.inputFile3