Mercurial > repos > mheinzl > fsd
diff fsd.py @ 6:c4b8222dce29 draft
planemo upload for repository https://github.com/monikaheinzl/galaxyProject/tree/master/tools/fsd commit 1667d50b521325eea1eada1b16029b1ba1379c5f
| author | mheinzl |
|---|---|
| date | Wed, 09 May 2018 09:20:06 -0400 |
| parents | 69f47e0b804e |
| children | 43b16247c35a |
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--- a/fsd.py Wed May 09 09:13:46 2018 -0400 +++ b/fsd.py Wed May 09 09:20:06 2018 -0400 @@ -29,8 +29,8 @@ def make_argparser(): parser = argparse.ArgumentParser(description='Family Size Distribution of duplex sequencing data') - # parser.add_argument('inputFile', - # help='Tabular File with three columns: ab or ba, tag and family size.') + parser.add_argument('--inputFile1', + help='Tabular File with three columns: ab or ba, tag and family size.') parser.add_argument('--inputName1') parser.add_argument('--inputFile2',default=None, help='Tabular File with three columns: ab or ba, tag and family size.') @@ -53,9 +53,9 @@ parser = make_argparser() args=parser.parse_args(argv[1:]) - #firstFile = args.inputFile + firstFile = args.inputFile1 name1 = args.inputName1 - firstFile = args.inputName1 + #firstFile = args.inputName1 secondFile = args.inputFile2 name2 = args.inputName2