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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit 033dd7b750f68e8aa68f327d7d72bd311ddbee4e-dirty
| author | mheinzl |
|---|---|
| date | Wed, 14 Aug 2019 12:38:15 -0400 |
| parents | c825a29a7d9f |
| children | 6651e76baca1 |
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Values from family size distribution with all datasets (tags) Family size fsd_data1.tab fsd_data2.tab fsd_data3.tab FS=1 63 63 63 FS=2 5 5 5 FS=3 8 8 8 FS=4 9 9 9 FS=5 3 3 3 FS=6 5 5 5 FS=7 3 3 3 FS=8 3 3 3 FS=9 2 2 2 FS=10 3 3 3 FS=11 1 1 1 FS=12 3 3 3 FS=13 3 3 3 FS=14 0 0 0 FS=15 0 0 0 FS=16 0 0 0 FS=17 0 0 0 FS=18 0 0 0 FS=19 0 0 0 FS=20 0 0 0 FS>20 1 1 1 sum 112 112 112 Values from family size distribution with all datasets (PE reads) Family size fsd_data1.tab fsd_data2.tab fsd_data3.tab FS=1 63 63 63 FS=2 10 10 10 FS=3 24 24 24 FS=4 36 36 36 FS=5 15 15 15 FS=6 30 30 30 FS=7 21 21 21 FS=8 24 24 24 FS=9 18 18 18 FS=10 30 30 30 FS=11 11 11 11 FS=12 36 36 36 FS=13 39 39 39 FS=14 0 0 0 FS=15 0 0 0 FS=16 0 0 0 FS=17 0 0 0 FS=18 0 0 0 FS=19 0 0 0 FS=20 0 0 0 FS>20 21 21 21 sum 378 378 378 Dataset: fsd_data1.tab max. family size: 21 absolute frequency: 1 relative frequency: 0.009 median family size: 1.0 mean family size: 3.375 singletons: family size > 20: length of dataset: nr. of tags rel. freq of tags rel.freq of PE reads nr. of tags rel. freq of tags nr. of PE reads rel. freq of PE reads total nr. of tags total nr. of PE reads fsd_data1.tab 63 0.562 0.167 1 0.009 21 0.056 112 378 The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS) Whereas the total frequencies were calculated from the whole dataset (=including the DCS). FS >= 1 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: unique: total unique total: SSCS ab 47 123 0.431 0.339 0.420 0.325 SSCS ba 59 222 0.488 0.481 0.476 0.468 DCS (total) 3 (6) 18 (33) 0.028 0.027 (0.054) 0.050 0.048 (0.087) total nr. of tags 109 363 109 112 363 378 FS >= 3 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: unique: total unique total: SSCS ab 14 87 0.341 0.259 0.313 0.224 SSCS ba 26 187 0.491 0.481 0.495 0.482 DCS (total) 1 (2) 4 (14) 0.024 0.024 (0.048) 0.014 0.014 (0.049) total nr. of tags 41 278 41 42 278 288 Values from family size distribution duplex ab ba sum FS=1 2 30 31 63 FS=2 0 3 2 5 FS=3 0 3 5 8 FS=4 2 3 4 9 FS=5 0 2 1 3 FS=6 0 1 4 5 FS=7 0 1 2 3 FS=8 0 1 2 3 FS=9 0 0 2 2 FS=10 1 1 1 3 FS=11 0 0 1 1 FS=12 0 1 2 3 FS=13 1 1 1 3 FS=14 0 0 0 0 FS=15 0 0 0 0 FS=16 0 0 0 0 FS=17 0 0 0 0 FS=18 0 0 0 0 FS=19 0 0 0 0 FS=20 0 0 0 0 FS>20 0 0 1 1 Dataset: fsd_data2.tab max. family size: 21 absolute frequency: 1 relative frequency: 0.009 median family size: 1.0 mean family size: 3.375 singletons: family size > 20: length of dataset: nr. of tags rel. freq of tags rel.freq of PE reads nr. of tags rel. freq of tags nr. of PE reads rel. freq of PE reads total nr. of tags total nr. of PE reads fsd_data2.tab 63 0.562 0.167 1 0.009 21 0.056 112 378 The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS) Whereas the total frequencies were calculated from the whole dataset (=including the DCS). FS >= 1 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: unique: total unique total: SSCS ab 47 123 0.431 0.339 0.420 0.325 SSCS ba 59 222 0.488 0.481 0.476 0.468 DCS (total) 3 (6) 18 (33) 0.028 0.027 (0.054) 0.050 0.048 (0.087) total nr. of tags 109 363 109 112 363 378 FS >= 3 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: unique: total unique total: SSCS ab 14 87 0.341 0.259 0.313 0.224 SSCS ba 26 187 0.491 0.481 0.495 0.482 DCS (total) 1 (2) 4 (14) 0.024 0.024 (0.048) 0.014 0.014 (0.049) total nr. of tags 41 278 41 42 278 288 Values from family size distribution duplex ab ba sum FS=1 2 30 31 63 FS=2 0 3 2 5 FS=3 0 3 5 8 FS=4 2 3 4 9 FS=5 0 2 1 3 FS=6 0 1 4 5 FS=7 0 1 2 3 FS=8 0 1 2 3 FS=9 0 0 2 2 FS=10 1 1 1 3 FS=11 0 0 1 1 FS=12 0 1 2 3 FS=13 1 1 1 3 FS=14 0 0 0 0 FS=15 0 0 0 0 FS=16 0 0 0 0 FS=17 0 0 0 0 FS=18 0 0 0 0 FS=19 0 0 0 0 FS=20 0 0 0 0 FS>20 0 0 1 1 Dataset: fsd_data3.tab max. family size: 21 absolute frequency: 1 relative frequency: 0.009 median family size: 1.0 mean family size: 3.375 singletons: family size > 20: length of dataset: nr. of tags rel. freq of tags rel.freq of PE reads nr. of tags rel. freq of tags nr. of PE reads rel. freq of PE reads total nr. of tags total nr. of PE reads fsd_data3.tab 63 0.562 0.167 1 0.009 21 0.056 112 378 The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS) Whereas the total frequencies were calculated from the whole dataset (=including the DCS). FS >= 1 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: unique: total unique total: SSCS ab 47 123 0.431 0.339 0.420 0.325 SSCS ba 59 222 0.488 0.481 0.476 0.468 DCS (total) 3 (6) 18 (33) 0.028 0.027 (0.054) 0.050 0.048 (0.087) total nr. of tags 109 363 109 112 363 378 FS >= 3 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: unique: total unique total: SSCS ab 14 87 0.341 0.259 0.313 0.224 SSCS ba 26 187 0.491 0.481 0.495 0.482 DCS (total) 1 (2) 4 (14) 0.024 0.024 (0.048) 0.014 0.014 (0.049) total nr. of tags 41 278 41 42 278 288 Values from family size distribution duplex ab ba sum FS=1 2 30 31 63 FS=2 0 3 2 5 FS=3 0 3 5 8 FS=4 2 3 4 9 FS=5 0 2 1 3 FS=6 0 1 4 5 FS=7 0 1 2 3 FS=8 0 1 2 3 FS=9 0 0 2 2 FS=10 1 1 1 3 FS=11 0 0 1 1 FS=12 0 1 2 3 FS=13 1 1 1 3 FS=14 0 0 0 0 FS=15 0 0 0 0 FS=16 0 0 0 0 FS=17 0 0 0 0 FS=18 0 0 0 0 FS=19 0 0 0 0 FS=20 0 0 0 0 FS>20 0 0 1 1