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comparison test-data/output_file.tabular @ 8:238a71241876 draft

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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd_beforevsafter commit dfaab79252a858e8df16bbea3607ebf1b6962e5a-dirty
author mheinzl
date Mon, 08 Oct 2018 05:55:14 -0400
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7:c357ce2783a4 8:238a71241876
1 Dataset: Test_data.tabular
2 AB BA
3 max. family size: 85 332
4 absolute frequency: 1 1
5 relative frequency: 0.062 0.062
6
7
8
9 total nr. of reads 1312
10
11
12 Values from family size distribution
13 before SSCS building after DCS building after trimming after alignment to reference
14 FS=1 0 0 0 0
15 FS=2 0 0 0 0
16 FS=3 1 8 0 1
17 FS=4 2 10 6 2
18 FS=5 2 5 3 2
19 FS=6 1 3 3 1
20 FS=7 5 5 3 5
21 FS=8 1 2 0 1
22 FS=9 3 2 1 3
23 FS=10 2 2 3 2
24 FS=11 2 1 0 2
25 FS=12 0 0 1 0
26 FS=13 0 0 4 0
27 FS=14 0 0 0 0
28 FS=15 1 0 1 1
29 FS=16 0 1 3 0
30 FS=17 0 0 3 0
31 FS=18 0 3 0 0
32 FS=19 0 0 0 0
33 FS=20 0 0 0 0
34 FS>20 12 8 3 12
35 sum 32 50 34 32
36
37
38 In the plot, the family sizes of ab and ba strands and of both duplex tags were used.
39 Whereas the total numbers indicate only the single count of the formed duplex tags.
40 total nr. of tags (unique, FS>=1) 16
41 DCS (before SSCS building, FS>=1) 16
42 total nr. of tags (unique, FS>=3) 16
43 DCS (before SSCS building, FS>=3) 16
44 after DCS building 25
45 after trimming 17
46 after alignment to reference 16