Mercurial > repos > mheinzl > fsd_bvsa

comparison fsd_beforevsafter.py @ 3:327c40a821ed draft

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planemo upload for repository https://github.com/monikaheinzl/galaxyProject/tree/master/tools/fsd_beforevsafter commit 29bc65d5627553741c83ce1f298223e2b266f7c8
author mheinzl
date Tue, 15 May 2018 14:22:10 -0400
parents e8115b71edbd
children 1eae0524b285
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2:e8115b71edbd 3:327c40a821ed
51 help='FASTA File with information about tag and family size in the header.') 51 help='FASTA File with information about tag and family size in the header.')
52 parser.add_argument('--afterTrimming',default=None, 52 parser.add_argument('--afterTrimming',default=None,
53 help='FASTA File with information about tag and family size in the header.') 53 help='FASTA File with information about tag and family size in the header.')
54 parser.add_argument('--alignedTags',default=None, 54 parser.add_argument('--alignedTags',default=None,
55 help=' TXT file with tags aligned to the reference genome and family size.') 55 help=' TXT file with tags aligned to the reference genome and family size.')
56 parser.add_argument('--output_pdf', default="data.pdf", type=str,
57 help='Name of the pdf and csv file.')
56 parser.add_argument('--output_csv', default="data.csv", type=str, 58 parser.add_argument('--output_csv', default="data.csv", type=str,
57 help='Name of the pdf and csv file.')
58 parser.add_argument('--output_pdf', default="data.pdf", type=str,
59 help='Name of the pdf and csv file.') 59 help='Name of the pdf and csv file.')
60 parser.add_argument('--sep', default=",", 60 parser.add_argument('--sep', default=",",
61 help='Separator in the csv file.') 61 help='Separator in the csv file.')
62 return parser 62 return parser
63 63