Mercurial > repos > mheinzl > fsd_bvsa

comparison test-data/fsd_ba_output.tab @ 9:e486f84adbec draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd_beforevsafter commit 31f11c1cb3303d741ee11a25903c3cc42a23f30d
author mheinzl
date Mon, 26 Nov 2018 04:26:20 -0500
parents
children
comparison
equal deleted inserted replaced
8:238a71241876 9:e486f84adbec
1 Dataset: fsd_ba_data.tab
2 AB BA
3 max. family size: 81 226
4 absolute frequency: 1 1
5 relative frequency: 0.100 0.100
6
7
8 total nr. of reads before SSCS building 1312
9
10
11 Values from family size distribution
12 before SSCS building after DCS building after trimming after alignment to reference
13 FS=1 0 0 0 0
14 FS=2 0 0 0 0
15 FS=3 1 8 0 0
16 FS=4 2 10 6 2
17 FS=5 2 5 3 2
18 FS=6 1 3 3 0
19 FS=7 5 5 3 4
20 FS=8 1 2 0 1
21 FS=9 3 2 1 3
22 FS=10 2 2 3 2
23 FS=11 2 1 0 2
24 FS=12 0 0 1 0
25 FS=13 0 0 4 0
26 FS=14 0 0 0 0
27 FS=15 1 0 1 0
28 FS=16 0 1 3 0
29 FS=17 0 0 3 0
30 FS=18 0 3 0 0
31 FS=19 0 0 0 0
32 FS=20 0 0 0 0
33 FS>20 12 8 3 4
34 sum 32 50 34 20
35
36
37 In the plot, the family sizes of ab and ba strands and of both duplex tags were used.
38 Whereas the total numbers indicate only the single count of the formed duplex tags.
39 total nr. of tags (unique, FS>=1) 16
40 DCS (before SSCS building, FS>=1) 16
41 total nr. of tags (unique, FS>=3) 16
42 DCS (before SSCS building, FS>=3) 16
43 after DCS building 25
44 after trimming 17
45 after alignment to reference 10