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view test-data/fsd_ba_output.tab @ 11:fca9b000b8d8 draft

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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd_beforevsafter commit 82b53a26581a2296ad272bbba1e80934864dfa58
author mheinzl
date Mon, 26 Nov 2018 04:38:21 -0500
parents e486f84adbec
children
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Dataset:	fsd_ba_data.tab
	AB	BA
max. family size:	81	226
absolute frequency:	1	1
relative frequency:	0.100	0.100


total nr. of reads before SSCS building	1312


Values from family size distribution
	before SSCS building	after DCS building	after trimming	after alignment to reference
FS=1	0	0	0	0
FS=2	0	0	0	0
FS=3	1	8	0	0
FS=4	2	10	6	2
FS=5	2	5	3	2
FS=6	1	3	3	0
FS=7	5	5	3	4
FS=8	1	2	0	1
FS=9	3	2	1	3
FS=10	2	2	3	2
FS=11	2	1	0	2
FS=12	0	0	1	0
FS=13	0	0	4	0
FS=14	0	0	0	0
FS=15	1	0	1	0
FS=16	0	1	3	0
FS=17	0	0	3	0
FS=18	0	3	0	0
FS=19	0	0	0	0
FS=20	0	0	0	0
FS>20	12	8	3	4
sum	32	50	34	20


In the plot, the family sizes of ab and ba strands and of both duplex tags were used.
Whereas the total numbers indicate only the single count of the formed duplex tags.
total nr. of tags (unique, FS>=1)	16
DCS (before SSCS building, FS>=1)	16
total nr. of tags (unique, FS>=3)	16
DCS (before SSCS building, FS>=3)	16
after DCS building	25
after trimming	17
after alignment to reference	10