Mercurial > repos > mheinzl > fsd_regions

comparison fsd_regions.py @ 2:2631864873d7 draft

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planemo upload for repository https://github.com/monikaheinzl/galaxyProject/tree/master/tools/fsd_regions commit 29bc65d5627553741c83ce1f298223e2b266f7c8
author mheinzl
date Tue, 15 May 2018 14:21:41 -0400
parents 9ce2b4089c1b
children b202c97deabe
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1:9ce2b4089c1b 2:2631864873d7
29 parser.add_argument('--inputFile', 29 parser.add_argument('--inputFile',
30 help='Tabular File with three columns: ab or ba, tag and family size.') 30 help='Tabular File with three columns: ab or ba, tag and family size.')
31 parser.add_argument('--inputName1') 31 parser.add_argument('--inputName1')
32 parser.add_argument('--ref_genome', 32 parser.add_argument('--ref_genome',
33 help='TXT File with tags of reads that overlap the region.') 33 help='TXT File with tags of reads that overlap the region.')
34 parser.add_argument('--output_pdf', default="data.pdf", type=str,
35 help='Name of the pdf and csv file.')
34 parser.add_argument('--output_csv', default="data.csv", type=str, 36 parser.add_argument('--output_csv', default="data.csv", type=str,
35 help='Name of the pdf and csv file.')
36 parser.add_argument('--output_pdf', default="data.pdf", type=str,
37 help='Name of the pdf and csv file.') 37 help='Name of the pdf and csv file.')
38 parser.add_argument('--sep', default=",", 38 parser.add_argument('--sep', default=",",
39 help='Separator in the csv file.') 39 help='Separator in the csv file.')
40 return parser 40 return parser
41 41