Mercurial > repos > mheinzl > fsd_regions

comparison fsd_regions.xml @ 3:85d870b8ae92 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/monikaheinzl/galaxyProject/tree/master/tools/fsd_regions commit 4c46f2914e9da5c310feb886b64fca8eb09ea767
author mheinzl
date Wed, 23 May 2018 15:06:27 -0400
parents 2631864873d7
children b202c97deabe
comparison
equal deleted inserted replaced
2:2631864873d7 3:85d870b8ae92
1 <?xml version="1.0" encoding="UTF-8"?> 1 <?xml version="1.0" encoding="UTF-8"?>
2 <tool id="fsd_regions" name="Duplex Sequencing Analysis:" version="0.0.3"> 2 <tool id="fsd_regions" name="Duplex Sequencing Analysis: fsd_regions" version="0.0.4">
3 <requirements> 3 <requirements>
4 <requirement type="package" version="2.7">python</requirement> 4 <requirement type="package" version="2.7">python</requirement>
5 <requirement type="package" version="1.4">matplotlib</requirement> 5 <requirement type="package" version="1.4">matplotlib</requirement>
6 </requirements> 6 </requirements>
7 <description>Family size distribution (FSD) of aligned tags to reference genome</description> 7 <description>Family size distribution (FSD) of user-specified regions</description>
8 <command> 8 <command>
9 python2 $__tool_directory__/fsd_regions.py --inputFile "$file1" --inputName1 "$file1.name" --ref_genome "$file2" --sep $separator --output_pdf $output_pdf --output_csv $output_csv 9 python2 $__tool_directory__/fsd_regions.py --inputFile "$file1" --inputName1 "$file1.name" --ref_genome "$file2" --sep $separator --output_pdf $output_pdf --output_csv $output_csv
10 </command> 10 </command>
11 <inputs> 11 <inputs>
12 <param name="file1" type="data" format="tabular" label="Dataset 1: input tags of whole dataset" optional="false" help="Input in tabular format with the family size, tags and the direction of the strand ('ab' or 'ba') for each family."/> 12 <param name="file1" type="data" format="tabular" label="Dataset 1: input tags of whole dataset" optional="false" help="Input in tabular format with the family size, tags and the direction of the strand ('ab' or 'ba') for each family."/>