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comparison fsd_regions.xml @ 12:fa3ff1c5280d draft

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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd_regions commit 5efe7fe08c0603254e1eeafdbc0043e8d94a6c01
author mheinzl
date Mon, 26 Nov 2018 04:59:56 -0500
parents 04c544617b44
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11:37db9decb5d0 12:fa3ff1c5280d
2 <tool id="fsd_regions" name="FSD regions" version="1.0.1"> 2 <tool id="fsd_regions" name="FSD regions" version="1.0.1">
3 <description>:Family size distribution (FSD) of user-specified regions in the reference genome</description> 3 <description>:Family size distribution (FSD) of user-specified regions in the reference genome</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="2.7">python</requirement> 5 <requirement type="package" version="2.7">python</requirement>
6 <requirement type="package" version="1.4.0">matplotlib</requirement> 6 <requirement type="package" version="1.4.0">matplotlib</requirement>
7 <requirement type="package" version="0.15">pysam</requirement>
7 </requirements> 8 </requirements>
8 <command> 9 <command>
9 python2 '$__tool_directory__/fsd_regions.py' --inputFile '$file1' --inputName1 '$file1.name' --bamFile '$file2' --rangesFile '$file3' --output_pdf $output_pdf --output_tabular $output_tabular 10 python2 '$__tool_directory__/fsd_regions.py' --inputFile '$file1' --inputName1 '$file1.name' --bamFile '$file2' --rangesFile '$file3' --output_pdf $output_pdf --output_tabular $output_tabular
10 </command> 11 </command>
11 <inputs> 12 <inputs>