Mercurial > repos > mheinzl > fsd_regions

diff fsd_regions.xml @ 10:04c544617b44 draft

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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd_regions commit 82b53a26581a2296ad272bbba1e80934864dfa58-dirty
author mheinzl
date Mon, 26 Nov 2018 04:42:25 -0500
parents eabfdc012d7b
children fa3ff1c5280d
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--- a/fsd_regions.xml	Mon Nov 26 04:25:26 2018 -0500
+++ b/fsd_regions.xml	Mon Nov 26 04:42:25 2018 -0500
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<tool id="fsd_regions" name="Duplex Sequencing Analysis: fsd_regions" version="1.0.1">
-    <description>Family size distribution (FSD) of user-specified regions in the reference genome</description>
+<tool id="fsd_regions" name="FSD regions" version="1.0.1">
+    <description>:Family size distribution (FSD) of user-specified regions in the reference genome</description>
     <requirements>
         <requirement type="package" version="2.7">python</requirement>
         <requirement type="package" version="1.4.0">matplotlib</requirement>
@@ -35,7 +35,7 @@
         
 **Input**
         
-**Dataset 1:** This tools expects a tabular file with the tags of all families, their sizes and information about forward (ab) and reverse (ba) strands. 
+**Dataset 1:** This tools expects a tabular file with the tags of all families, their sizes and information about forward (ab) and reverse (ba) strands::
 
     1  AAAAAAAAAAAATGTTGGAATCTT ba
    10  AAAAAAAAAAAGGCGGTCCACCCC ab
@@ -43,7 +43,7 @@
     
 **Dataset 2:** BAM file of the aligned reads. This file can be obtained by the tool "Map with BWA-MEM".
 
-**Dataset 3 (optional):** BED file with start and stop positions of the regions. If it is not provided, then all aligned reads of the BAM file are used in the distribution of family sizes. 
+**Dataset 3 (optional):** BED file with start and stop positions of the regions. If it is not provided, then all aligned reads of the BAM file are used in the distribution of family sizes::
 
    ACH_TDII   90    633
    ACH_TDII  659   1140