Mercurial > repos > mheinzl > fsd_regions

view test-data/output_file.tabular @ 5:52454637bc45 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd_regions commit 8833d1a8a49d7b6d4a9c849b0335d3260564b351-dirty
author mheinzl
date Wed, 17 Oct 2018 05:23:33 -0400
parents b202c97deabe
children 26014c24323a
line wrap: on
line source

Dataset:	Test_data
	AB	BA
max. family size:	85	332
absolute frequency:	9	1
relative frequency:	0.209	0.062

total nr. of reads	1312


Values from family size distribution
	87_636	656_1143	1141_1564	1892_2398	
FS=3	0	0	0	1	
FS=4	2	0	0	0	
FS=5	2	0	0	0	
FS=6	0	1	0	0	
FS=7	3	0	0	2	
FS=8	0	0	0	1	
FS=9	1	0	0	2	
FS=10	2	0	0	0	
FS=11	0	1	1	0	
FS=12	0	0	0	0	
FS=13	0	0	0	0	
FS=14	0	0	0	0	
FS=15	0	0	1	0	
FS=16	0	0	0	0	
FS=17	0	0	0	0	
FS=18	0	0	0	0	
FS=19	0	0	0	0	
FS=20	0	0	0	0	
FS>20	0	8	4	0	
sum	10	10	6	6	


In the plot, both family sizes of the ab and ba strands were used.
Whereas the total numbers indicate only the single count of the tags per region.
Region	total nr. of tags per region
87_636	5
656_1143	5
1141_1564	3
1892_2398	3
sum of tags	16