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annotate test-data/hd_chimeras_output.tab @ 32:b432cfa895ee draft default tip

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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 033dd7b750f68e8aa68f327d7d72bd311ddbee4e-dirty
author mheinzl
date Mon, 19 Aug 2019 15:12:10 -0400
parents 6b15b3b6405c
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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6b15b3b6405c planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
mheinzl
parents: 25
diff changeset
1 chimera tag family size, read direction similar tag with HD=0
6b15b3b6405c planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
mheinzl
parents: 25
diff changeset
2 AAAAAAAAAAAA AACCAAAACTTC 1 ba *AAAAAAAAAAAA* TCTTTCTTTGAG 2 ab
6b15b3b6405c planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
mheinzl
parents: 25
diff changeset
3 AAAAAAAAAAAA ACCAGGCGTCGA 1 ba *AAAAAAAAAAAA* AACCAAAACTTC 1 ba, *AAAAAAAAAAAA* AGCTCCACGTTG 1 ba, *AAAAAAAAAAAA* CAGTGTTGAGAC 1 ba, *AAAAAAAAAAAA* TCTTTCTTTGAG 2 ab, *AAAAAAAAAAAA* TTGGGTTCCTTA 1 ab
6b15b3b6405c planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
mheinzl
parents: 25
diff changeset
4 AAAAAAAAAAAA ATCGTGGTTTGT 1 ba *AAAAAAAAAAAA* CAGTGTTGAGAC 1 ba, AAAAAAAAAAAG *ATCGTGGTTTGT* 4 ba
6b15b3b6405c planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
mheinzl
parents: 25
diff changeset
5 AAAAAAAAAAAA ATTCACCCTTGT 1 ba *AAAAAAAAAAAA* CAGTGTTGAGAC 1 ba, AAAAAAAAAAAT *ATTCACCCTTGT* 6 ba
6b15b3b6405c planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
mheinzl
parents: 25
diff changeset
6 AAAAAAAAAAAA CACACTTAACTT 7 ba *AAAAAAAAAAAA* ATTCACCCTTGT 1 ba, *AAAAAAAAAAAA* CCGCTCCTCACA 4 ba, *AAAAAAAAAAAA* TCTTTCTTTGAG 2 ab
6b15b3b6405c planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
mheinzl
parents: 25
diff changeset
7 AAAAAAAAAAAA GGCAACACAGAA 1 ab *AAAAAAAAAAAA* ATCGTGGTTTGT 1 ba, AAAAAAAAAAAG *GGCAACACAGAA* 3 ab
6b15b3b6405c planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
mheinzl
parents: 25
diff changeset
8 AAAAAAAAAAAG AGTCGCACCCAG 1 ba *AAAAAAAAAAAG* ATCGTGGTTTGT 4 ba
6b15b3b6405c planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
mheinzl
parents: 25
diff changeset
9 AAAAAAAAAAAG CGCAACACAGAA 1 ab *AAAAAAAAAAAG* ATCGTGGTTTGT 4 ba
6b15b3b6405c planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
mheinzl
parents: 25
diff changeset
10 AAAAAAAAAAAG TAGCCCTAAACG 1 ab *AAAAAAAAAAAG* ATCGTGGTTTGT 4 ba
6b15b3b6405c planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
mheinzl
parents: 25
diff changeset
11 AAAAAAAAAAAG TCTTTCTTTGAG 1 ab AAAAAAAAAAAA *TCTTTCTTTGAG* 2 ab, *AAAAAAAAAAAG* ATCGTGGTTTGT 4 ba, *AAAAAAAAAAAG* CGCAACACAGAA 1 ab, *AAAAAAAAAAAG* GGCAACACAGAA 3 ab
6b15b3b6405c planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
mheinzl
parents: 25
diff changeset
12 AAAAAAAAAAAT ATCATAGACTCT 1 ab *AAAAAAAAAAAT* ATTCACCCTTGT 6 ba
6b15b3b6405c planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
mheinzl
parents: 25
diff changeset
13 AAAAAAAAAAAT ATTCGAAAGTTA 1 ba *AAAAAAAAAAAT* ATCATAGACTCT 1 ab, *AAAAAAAAAAAT* ATTCACCCTTGT 6 ba
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9e384b0741f1 planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
mheinzl
parents:
diff changeset
14 This file contains all tags that were identified as chimeras as the first column and the corresponding tags which returned a Hamming distance of zero in either the first or the second half of the sample tag as the second column.
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6b15b3b6405c planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
mheinzl
parents: 25
diff changeset
15 The tags were separated by an empty space into their halves and the * marks the identical half.
6b15b3b6405c planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
mheinzl
parents: 25
diff changeset
16
6b15b3b6405c planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
mheinzl
parents: 25
diff changeset
17 Statistics of nr. of tags that returned max. HD (2nd column)
6b15b3b6405c planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
mheinzl
parents: 25
diff changeset
18 minimum 1 tag(s)
6b15b3b6405c planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
mheinzl
parents: 25
diff changeset
19 mean 2.08333333333 tag(s)
6b15b3b6405c planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
mheinzl
parents: 25
diff changeset
20 median 2.0 tag(s)
6b15b3b6405c planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
mheinzl
parents: 25
diff changeset
21 maximum 5 tag(s)
6b15b3b6405c planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 5b3ab8c6467fe3a52e89f5a7d175bd8a0189018a-dirty
mheinzl
parents: 25
diff changeset
22 sum 25 tag(s)