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comparison hd.xml @ 15:cf7874bb4934 draft

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planemo upload for repository https://github.com/monikaheinzl/galaxyProject/tree/master/tools/hd commit 7414caec3ddba5c7b0ed8598811aab321720b088
author mheinzl
date Wed, 23 May 2018 14:23:00 -0400
parents 883e6381ba29
children ea67840d0514
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14:883e6381ba29 15:cf7874bb4934
1 <?xml version="1.0" encoding="UTF-8"?> 1 <?xml version="1.0" encoding="UTF-8"?>
2 <tool id="hd" name="Duplex Sequencing Analysis: hd" version="0.0.15"> 2 <tool id="hd" name="Duplex Sequencing Analysis: hd" version="0.0.16">
3 <requirements> 3 <requirements>
4 <requirement type="package" version="2.7">python</requirement> 4 <requirement type="package" version="2.7">python</requirement>
5 <requirement type="package" version="1.4">matplotlib</requirement> 5 <requirement type="package" version="1.4">matplotlib</requirement>
6 </requirements> 6 </requirements>
7 <description>Hamming distance (HD) analysis of tags</description> 7 <description>Hamming distance (HD) analysis of tags</description>
20 <param name="maxFS" type="integer" label="max family size of the tags" min="0" value="0" help="filters the tags after their family size: Families with larger size are skipped. If max. family size is 0, no upper bound is defined and the maximum family size in the analysis will be the maximum family size of the whole dataset. Default: max. family size = 0."/> 20 <param name="maxFS" type="integer" label="max family size of the tags" min="0" value="0" help="filters the tags after their family size: Families with larger size are skipped. If max. family size is 0, no upper bound is defined and the maximum family size in the analysis will be the maximum family size of the whole dataset. Default: max. family size = 0."/>
21 <param name="separator" type="text" label="Separator of the CSV file." help="can be a single character" value=","/> 21 <param name="separator" type="text" label="Separator of the CSV file." help="can be a single character" value=","/>
22 <param name="onlyDCS" type="boolean" label="only DCS in the analysis?" truevalue="" falsevalue="--only_DCS" checked="False" help="Only tags, which have a partner tag in the dataset, are included in the analysis."/> 22 <param name="onlyDCS" type="boolean" label="only DCS in the analysis?" truevalue="" falsevalue="--only_DCS" checked="False" help="Only tags, which have a partner tag in the dataset, are included in the analysis."/>
23 <param name="subsetTag" type="integer" label="shorten tag in the analysis?" value="0" help="An analysis with shorter tag length, which is specified by this parameter, is simulated. If this parameter is 0 (by default), the tag with its original length is used in the analysis."/> 23 <param name="subsetTag" type="integer" label="shorten tag in the analysis?" value="0" help="An analysis with shorter tag length, which is specified by this parameter, is simulated. If this parameter is 0 (by default), the tag with its original length is used in the analysis."/>
24 <param name="nproc" type="integer" label="number of processors" value="8" help="Number of processor used for computing."/> 24 <param name="nproc" type="integer" label="number of processors" value="8" help="Number of processor used for computing."/>
25 <param name="nr_above_bars" type="boolean" label="include numbers above bars?" truevalue="" falsevalue="--nr_above_bars" checked="False" help="The absolute and relative values of the bar can be included or removed in the plot. "/> 25 <param name="nr_above_bars" type="boolean" label="include numbers above bars?" truevalue="--nr_above_bars" falsevalue="" checked="False" help="The absolute and relative values of the bar can be included or removed in the plot. "/>
26 26
27 </inputs> 27 </inputs>
28 <outputs> 28 <outputs>
29 <data name="output_csv" format="csv"/> 29 <data name="output_csv" format="csv"/>
30 <data name="output_csv2" format="csv"> 30 <data name="output_csv2" format="csv">