Mercurial > repos > mheinzl > hd

diff hd.xml @ 14:883e6381ba29 draft

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planemo upload for repository https://github.com/monikaheinzl/galaxyProject/tree/master/tools/hd commit 38f5c032262361131c645812dd3dc639be6a5f4e
author mheinzl
date Wed, 23 May 2018 14:14:10 -0400
parents 5b0a95f205ad
children cf7874bb4934
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--- a/hd.xml	Tue May 15 14:23:10 2018 -0400
+++ b/hd.xml	Wed May 23 14:14:10 2018 -0400
@@ -1,12 +1,13 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<tool id="hd" name="Duplex Sequencing Analysis:" version="0.0.14">
+<tool id="hd" name="Duplex Sequencing Analysis: hd" version="0.0.15">
     <requirements>
         <requirement type="package" version="2.7">python</requirement>
         <requirement type="package" version="1.4">matplotlib</requirement>
     </requirements>
     <description>Hamming distance (HD) analysis of tags</description>
     <command>
-        python2 $__tool_directory__/hd.py --inputFile "$inputFile" --inputName1 "$inputFile.name" --inputFile2 "$inputFile2" --inputName2 "$inputFile2.name" --sample_size $sampleSize --sep $separator --subset_tag $subsetTag --nproc $nproc $onlyDCS --minFS $minFS --maxFS $maxFS --output_pdf $output_pdf --output_csv $output_csv 
+        python2 $__tool_directory__/hd.py --inputFile "$inputFile" --inputName1 "$inputFile.name" --inputFile2 "$inputFile2" --inputName2 "$inputFile2.name" --sample_size $sampleSize --sep $separator --subset_tag $subsetTag --nproc $nproc $onlyDCS --minFS $minFS --maxFS $maxFS
+		$nr_above_bars --output_pdf $output_pdf --output_csv $output_csv 
         #if $inputFile2:
         --output_pdf2 $output_pdf2 --output_csv2 $output_csv2
         #end if
@@ -21,6 +22,8 @@
         <param name="onlyDCS" type="boolean" label="only DCS in the analysis?" truevalue="" falsevalue="--only_DCS" checked="False" help="Only tags, which have a partner tag in the dataset, are included in the analysis."/>
         <param name="subsetTag" type="integer" label="shorten tag in the analysis?" value="0" help="An analysis with shorter tag length, which is specified by this parameter, is simulated. If this parameter is 0 (by default), the tag with its original length is used in the analysis."/>
         <param name="nproc" type="integer" label="number of processors" value="8" help="Number of processor used for computing."/>
+        <param name="nr_above_bars" type="boolean" label="include numbers above bars?" truevalue="" falsevalue="--nr_above_bars" checked="False" help="The absolute and relative values of the bar can be included or removed in the plot. "/>
+ 
     </inputs>
     <outputs>
         <data name="output_csv" format="csv"/>