# HG changeset patch
# User mheinzl
# Date 1527099780 14400
# Node ID cf7874bb493499e397d437149397775d3410cefe
# Parent  883e6381ba29ba73b224438f2c861e7001ffd35b
planemo upload for repository https://github.com/monikaheinzl/galaxyProject/tree/master/tools/hd commit 7414caec3ddba5c7b0ed8598811aab321720b088

diff -r 883e6381ba29 -r cf7874bb4934 hd.py
--- a/hd.py	Wed May 23 14:14:10 2018 -0400
+++ b/hd.py	Wed May 23 14:23:00 2018 -0400
@@ -906,7 +906,7 @@
             ##########################       Plot HD within tags          ########################################################
             ######################################################################################################################
            # plotHDwithinSeq_Sum2(HDhalf1, HDhalf2, minHDs, pdf=pdf, lenTags=lenTags, title_file1=name_file)
-            plotHDwithinSeq_Sum2(HDhalf1, HDhalf2, HDhalf1min, HDhalf2min, minHDs, pdf=pdf, lenTags=lenTags, title_file1=name_file)
+            plotHDwithinSeq_Sum2(HDhalf1, HDhalf1min,HDhalf2min, HDhalf2 , minHDs, pdf=pdf, lenTags=lenTags, title_file1=name_file)
             
             
             ##########################       Plot difference between HD's separated after FSD ####################################
diff -r 883e6381ba29 -r cf7874bb4934 hd.xml
--- a/hd.xml	Wed May 23 14:14:10 2018 -0400
+++ b/hd.xml	Wed May 23 14:23:00 2018 -0400
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<tool id="hd" name="Duplex Sequencing Analysis: hd" version="0.0.15">
+<tool id="hd" name="Duplex Sequencing Analysis: hd" version="0.0.16">
     <requirements>
         <requirement type="package" version="2.7">python</requirement>
         <requirement type="package" version="1.4">matplotlib</requirement>
@@ -22,7 +22,7 @@
         <param name="onlyDCS" type="boolean" label="only DCS in the analysis?" truevalue="" falsevalue="--only_DCS" checked="False" help="Only tags, which have a partner tag in the dataset, are included in the analysis."/>
         <param name="subsetTag" type="integer" label="shorten tag in the analysis?" value="0" help="An analysis with shorter tag length, which is specified by this parameter, is simulated. If this parameter is 0 (by default), the tag with its original length is used in the analysis."/>
         <param name="nproc" type="integer" label="number of processors" value="8" help="Number of processor used for computing."/>
-        <param name="nr_above_bars" type="boolean" label="include numbers above bars?" truevalue="" falsevalue="--nr_above_bars" checked="False" help="The absolute and relative values of the bar can be included or removed in the plot. "/>
+        <param name="nr_above_bars" type="boolean" label="include numbers above bars?" truevalue="--nr_above_bars" falsevalue="" checked="False" help="The absolute and relative values of the bar can be included or removed in the plot. "/>
  
     </inputs>
     <outputs>