Mercurial > repos > mheinzl > hd
changeset 18:a8581bf627fd draft
planemo upload for repository https://github.com/monikaheinzl/galaxyProject/tree/master/tools/hd commit b09f6822cb5acf314c5034323501d6300fda25cc
| author | mheinzl |
|---|---|
| date | Wed, 23 May 2018 14:47:43 -0400 |
| parents | 4a30328b1af9 |
| children | 2e9f7ea7ae93 |
| files | hd.py hd.xml |
| diffstat | 2 files changed, 4 insertions(+), 3 deletions(-) [+] |
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--- a/hd.py Wed May 23 14:41:47 2018 -0400 +++ b/hd.py Wed May 23 14:47:43 2018 -0400 @@ -977,7 +977,7 @@ # chimeric reads if len(minHD_tags_zeros) != 0: # absolute difference and tags where at least one half has HD=0 - summary15, sumCol15 = createTableHD(listDifference1_zeros, "diff=") + summary15, sumCol15 = createTableHD(listDifference1_zeros, "HD=") overallSum15 = sum(sumCol15) # absolute difference and tags where at least one half has HD=0 # summary23, sumCol23 = createTableFSD2(familySizeList1_diff_zeros, diff=False) @@ -996,7 +996,8 @@ diff=False) count = numpy.bincount(quant) - output_file.write("{}{}\n".format(sep, f)) + #output_file.write("{}{}\n".format(sep, name_file)) + output_file.write("\n") output_file.write("max. family size:{}{}\n".format(sep, max(quant))) output_file.write("absolute frequency:{}{}\n".format(sep, count[len(count) - 1])) output_file.write(
--- a/hd.xml Wed May 23 14:41:47 2018 -0400 +++ b/hd.xml Wed May 23 14:47:43 2018 -0400 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="hd" name="Duplex Sequencing Analysis: hd" version="0.0.18"> +<tool id="hd" name="Duplex Sequencing Analysis: hd" version="0.0.19"> <requirements> <requirement type="package" version="2.7">python</requirement> <requirement type="package" version="1.4">matplotlib</requirement>