Mercurial > repos > mheinzl > hd
changeset 16:ea67840d0514 draft
planemo upload for repository https://github.com/monikaheinzl/galaxyProject/tree/master/tools/hd commit 797ff8e0461392fe4542de33e7b58f9e0abefc7c
| author | mheinzl |
|---|---|
| date | Wed, 23 May 2018 14:31:48 -0400 |
| parents | cf7874bb4934 |
| children | 4a30328b1af9 |
| files | hd.py hd.xml |
| diffstat | 2 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/hd.py Wed May 23 14:23:00 2018 -0400 +++ b/hd.py Wed May 23 14:31:48 2018 -0400 @@ -180,7 +180,7 @@ plt.axis((minimumX - 1, maximumX + 1, 0, maximumY * 1.1)) plt.xticks(numpy.arange(0, maximumX + 1, 1.0)) - plt.ylim((0, maximumY * 1.1)) + plt.ylim((0, maximumY * 1.2)) legend = "sample size= {:,} against {:,}".format(len(ham[0]), lenTags, lenTags) plt.text(0.14, -0.01, legend, size=12, transform=plt.gcf().transFigure) @@ -906,7 +906,7 @@ ########################## Plot HD within tags ######################################################## ###################################################################################################################### # plotHDwithinSeq_Sum2(HDhalf1, HDhalf2, minHDs, pdf=pdf, lenTags=lenTags, title_file1=name_file) - plotHDwithinSeq_Sum2(HDhalf1, HDhalf1min,HDhalf2min, HDhalf2 , minHDs, pdf=pdf, lenTags=lenTags, title_file1=name_file) + plotHDwithinSeq_Sum2(HDhalf1, HDhalf1min,HDhalf2, HDhalf2min , minHDs, pdf=pdf, lenTags=lenTags, title_file1=name_file) ########################## Plot difference between HD's separated after FSD ####################################
--- a/hd.xml Wed May 23 14:23:00 2018 -0400 +++ b/hd.xml Wed May 23 14:31:48 2018 -0400 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8"?> -<tool id="hd" name="Duplex Sequencing Analysis: hd" version="0.0.16"> +<tool id="hd" name="Duplex Sequencing Analysis: hd" version="0.0.17"> <requirements> <requirement type="package" version="2.7">python</requirement> <requirement type="package" version="1.4">matplotlib</requirement> @@ -22,7 +22,7 @@ <param name="onlyDCS" type="boolean" label="only DCS in the analysis?" truevalue="" falsevalue="--only_DCS" checked="False" help="Only tags, which have a partner tag in the dataset, are included in the analysis."/> <param name="subsetTag" type="integer" label="shorten tag in the analysis?" value="0" help="An analysis with shorter tag length, which is specified by this parameter, is simulated. If this parameter is 0 (by default), the tag with its original length is used in the analysis."/> <param name="nproc" type="integer" label="number of processors" value="8" help="Number of processor used for computing."/> - <param name="nr_above_bars" type="boolean" label="include numbers above bars?" truevalue="--nr_above_bars" falsevalue="" checked="False" help="The absolute and relative values of the bar can be included or removed in the plot. "/> + <param name="nr_above_bars" type="boolean" label="include numbers above bars?" truevalue="--nr_above_bars" falsevalue="" checked="True" help="The absolute and relative values of the bar can be included or removed in the plot. "/> </inputs> <outputs>