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comparison test-data/td_chimeras_output.tab @ 0:3e56058d9552 draft default tip

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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/hd commit 9bae9043a53f1e07b502acd1082450adcb6d9e31-dirty
author mheinzl
date Wed, 16 Oct 2019 04:17:59 -0400
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-1:000000000000 0:3e56058d9552
1 chimera tag family size, read direction similar tag with TD=0
2 AAAAAAAAAAAA AACCAAAACTTC 1 ba *AAAAAAAAAAAA* TCTTTCTTTGAG 2 ab
3 AAAAAAAAAAAA ACCAGGCGTCGA 1 ba *AAAAAAAAAAAA* AACCAAAACTTC 1 ba, *AAAAAAAAAAAA* AGCTCCACGTTG 1 ba, *AAAAAAAAAAAA* CAGTGTTGAGAC 1 ba, *AAAAAAAAAAAA* TCTTTCTTTGAG 2 ab, *AAAAAAAAAAAA* TTGGGTTCCTTA 1 ab
4 AAAAAAAAAAAA ATCGTGGTTTGT 1 ba *AAAAAAAAAAAA* CAGTGTTGAGAC 1 ba, AAAAAAAAAAAG *ATCGTGGTTTGT* 4 ba
5 AAAAAAAAAAAA ATTCACCCTTGT 1 ba *AAAAAAAAAAAA* CAGTGTTGAGAC 1 ba, AAAAAAAAAAAT *ATTCACCCTTGT* 6 ba
6 AAAAAAAAAAAA CACACTTAACTT 7 ba *AAAAAAAAAAAA* ATTCACCCTTGT 1 ba, *AAAAAAAAAAAA* CCGCTCCTCACA 4 ba, *AAAAAAAAAAAA* TCTTTCTTTGAG 2 ab
7 AAAAAAAAAAAA GGCAACACAGAA 1 ab *AAAAAAAAAAAA* ATCGTGGTTTGT 1 ba, AAAAAAAAAAAG *GGCAACACAGAA* 3 ab
8 AAAAAAAAAAAG AGTCGCACCCAG 1 ba *AAAAAAAAAAAG* ATCGTGGTTTGT 4 ba
9 AAAAAAAAAAAG CGCAACACAGAA 1 ab *AAAAAAAAAAAG* ATCGTGGTTTGT 4 ba
10 AAAAAAAAAAAG TAGCCCTAAACG 1 ab *AAAAAAAAAAAG* ATCGTGGTTTGT 4 ba
11 AAAAAAAAAAAG TCTTTCTTTGAG 1 ab AAAAAAAAAAAA *TCTTTCTTTGAG* 2 ab, *AAAAAAAAAAAG* ATCGTGGTTTGT 4 ba, *AAAAAAAAAAAG* CGCAACACAGAA 1 ab, *AAAAAAAAAAAG* GGCAACACAGAA 3 ab
12 AAAAAAAAAAAT ATCATAGACTCT 1 ab *AAAAAAAAAAAT* ATTCACCCTTGT 6 ba
13 AAAAAAAAAAAT ATTCGAAAGTTA 1 ba *AAAAAAAAAAAT* ATCATAGACTCT 1 ab, *AAAAAAAAAAAT* ATTCACCCTTGT 6 ba
14 This file contains all tags that were identified as chimeras as the first column and the corresponding tags which returned a Hamming distance of zero in either the first or the second half of the sample tag as the second column.
15 The tags were separated by an empty space into their halves and the * marks the identical half.
16
17 Statistics of nr. of tags that returned max. TD (2nd column)
18 minimum 1 tag(s)
19 mean 2.08333333333 tag(s)
20 median 2.0 tag(s)
21 maximum 5 tag(s)
22 sum 25 tag(s)