Mercurial > repos > mheinzl > variant_analyzer2

comparison read2mut.py @ 37:6ba980a3e91a draft

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planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8
author mheinzl
date Wed, 24 Feb 2021 12:55:52 +0000
parents ac400b6e44e1
children 797a58b9eccf
comparison
equal deleted inserted replaced
36:ac400b6e44e1 37:6ba980a3e91a
780 'tier 1.1', 'tier 1.2', 'tier 2.1', 'tier 2.2', 'tier 2.3', 'tier 2.4', 780 'tier 1.1', 'tier 1.2', 'tier 2.1', 'tier 2.2', 'tier 2.3', 'tier 2.4',
781 'tier 3.1', 'tier 3.2', 'tier 4.1', 'tier 4.2', 'tier 5', 'tier 6', 'AF 1.1-1.2', 'AF 1.1-2.1', 'AF 1.1-2.2', 781 'tier 3.1', 'tier 3.2', 'tier 4.1', 'tier 4.2', 'tier 5', 'tier 6', 'AF 1.1-1.2', 'AF 1.1-2.1', 'AF 1.1-2.2',
782 'AF 1.1-2.3', 'AF 1.1-2.4', 'AF 1.1-3.1', 'AF 1.1-3.2', 'AF 1.1-4.1', 'AF 1.1-4.2', 'AF 1.1-5', 'AF 1.1-6') 782 'AF 1.1-2.3', 'AF 1.1-2.4', 'AF 1.1-3.1', 'AF 1.1-3.2', 'AF 1.1-4.1', 'AF 1.1-4.2', 'AF 1.1-5', 'AF 1.1-6')
783 783
784 ws2.write_row(0, 0, header_line2) 784 ws2.write_row(0, 0, header_line2)
785 ws2.conditional_format('J1:K1', {'type': 'formula', 'criteria': '=$J$1=tier 1.1', 'format': format1}) 785 ws2.conditional_format('J1:K1', {'type': 'formula', 'criteria': '==', 'value': 'tier 1.1', 'format': format1})
786 786
787 row = 0 787 row = 0
788 788
789 for key1, value1 in sorted(tier_dict.items()): 789 for key1, value1 in sorted(tier_dict.items()):
790 if key1 in pure_tags_dict_short.keys(): 790 if key1 in pure_tags_dict_short.keys():