Mercurial > repos > mheinzl > variant_analyzer2

diff read2mut.py @ 56:371c09d4050b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8
author mheinzl
date Fri, 12 Mar 2021 14:22:03 +0000
parents 8fbe6aba07e5
children 706bf8b59eae
line wrap: on
line diff
--- a/read2mut.py	Fri Mar 12 14:18:45 2021 +0000
+++ b/read2mut.py	Fri Mar 12 14:22:03 2021 +0000
@@ -1225,7 +1225,7 @@
                          ("Tier 2.2", "both ab and ba SSCS present (>75% of the sites with alt. base) and mate pair validation (min. FS=1)"),
                          ("Tier 2.3", "both ab and ba SSCS present (>75% of the sites with alt. base) and minimal FS=1 for both SSCS in one mate and minimal FS>=3 for at least one of the SSCS in the other mate"),
                          ("Tier 2.4", "both ab and ba SSCS present (>75% of the sites with alt. base) and minimal FS=1 for both SSCS in at least one mate"),
-                         ("Tier 2.5", "variants at the start or end of the read and recurring mutation on this position in tier 1.1-2.4")
+                         ("Tier 2.5", "variants at the start or end of the read and recurring mutation on this position in tier 1.1-2.4"),
                          ("Tier 3.1", "both ab and ba SSCS present (>50% of the sites with alt. base) and recurring mutation on this position"),
                          ("Tier 3.2", "both ab and ba SSCS present (>50% of the sites with alt. base) and minimal FS>=1 for both SSCS in at least one mate"),
                          ("Tier 4", "variants at the start or end of the reads"),