Mercurial > repos > mheinzl > variant_analyzer2
diff read2mut.py @ 52:49ecab32c83f draft
planemo upload for repository https://github.com/Single-Molecule-Genetics/VariantAnalyzerGalaxy/tree/master/tools/variant_analyzer commit ee4a8e6cf290e6c8a4d55f9cd2839d60ab3b11c8
| author | mheinzl |
|---|---|
| date | Thu, 11 Mar 2021 15:03:42 +0000 |
| parents | 26e53b5b8bcb |
| children | 27b00e38e13d |
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--- a/read2mut.py Thu Mar 11 14:58:29 2021 +0000 +++ b/read2mut.py Thu Mar 11 15:03:42 2021 +0000 @@ -1071,7 +1071,8 @@ chimera_dict[key1] = (chimeric_dcs, chimeric_dcs_high_tiers) # move tier 4 counts to tier 2.5 if there other mutations with tier <= 2.4 - print(list(tier_dict[key1].keys())[:6]) + print(list(sorted(tier_dict[key1].keys()))) + print(list(sorted(tier_dict[key1].keys()))[:6]) sum_highTiers = sum([tier_dict[key1][ij] for ij in list(tier_dict[key1].keys())[:6]]) print(sum_highTiers) if tier_dict[key1]["tier 4"] > 0 and sum_highTiers > 0: